Os05g0458400

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Revision as of 10:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0458400| Description = Similar to AAA-metalloprotease FtsH| Version = NM_001062280.1 GI:115464290 GeneID:4339002| Length = 5798 bp| Defini...")
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Gene Name

Os05g0458400

Description

Similar to AAA-metalloprotease FtsH

Version

NM_001062280.1 GI:115464290 GeneID:4339002

Length

5798 bp

Definition

Oryza sativa Japonica Group Os05g0458400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:22564129..22569926

Sequence Coding Region

22564340..22564406,22564498..22564728,22564835..22564909,22565567..22565700,22566145..22566630
,22566810..22567577,22568323..22568550,22569250..22569729

Expression

GEO Profiles:Os05g0458400

Genome Context

<gbrowseImage1> name=NC_008398:22564129..22569926 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:22564129..22569926 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcctcgcctcgctcgcccgcgcgctctcccgccgctccgcgccctcctcctcccgcgcgcgccagggtttctccctcggtgggctaggtgggaccaccaggtcgccgccgccgccgtcgtcgccgctcccatcgctccatggcggggagggcggtgggctgggattgggattcgtccgcgggtacctgacggcggcgctggggaggcccgccgcggtgaaggctgggacagactggaggtccatcctcgcgaacccgcagttccggaggctcttctctgacgggtccaagaagaattacgagaactactaccccaagggcaagaaggaggcgccgaagggggatgggagtaacaagtctgattcgaagcaagattcaagtacagacgatcaatggaatttccaggagactgcctcaaagcaattgcaaaattttctggcacctctactgtttcttggactgatgctctcgtccttgtcgtcgagctcatcagaccaaaaggagataagcttccaggaattcaagaataagctactagaacctggtttagttgaccgcattgttgtttcaaataaatcagtggcaaaggtctatgtcaggagttcaccacagtcgaacagccaaggtcagaacactgatgccatcattaccaccaatgatgttccgagcaagcatactcccagcagatacaagtattacttcaatattggaagtgttgattcctttgaagaaaagttagaggaagcccaggaagctttgggagtagatccacatgattttgttccagtaacttatgttgctgaagtgaattggttccaagaagtaatgagatttgccccaacagtctttcttgttgggctaatatatttgatgagcaaaagaatgcagagtggttttaatattggaggtggacctggcaagggtggccgtggtatttttaatattggaaaagctcaggtgacgaagatggacaaaaattccaaaaacaaggtgttttttaaggatgtagctggttgtgatgaagctaagcaagaaataatggagtttgtgcatttccttaagaatcccaagaagtatgaagagttaggagctaagataccaaaaggtgccttgcttgtgggtcctcctggaacaggcaagactctgcttgccaaagctacagcaggagagtctggtgtgcccttcctgtctatttctggatcagatttcatggaaatgtttgttggggttggaccatccagggtacggaacttattccaagaagctcggcaatgtgctcccagtattatatttattgatgagatcgatgcgattggtcgtgcaagaggccgtggagggttttctggttcaaatgatgagcgtgaaagtactttgaaccagctgcttgtagagatggatgggtttggtacaacttctggtgttgttgttcttgctggtacaaataggcctgatattttagataaagccttgctaaggcctggaagatttgatcgccaaataacaatagacaagccagatataaagggccgtgatcaaatattccgcatatatcttaaaaaacttaaacttgacaatgagccatcattttattcgcaaaggctagcggctttgacacctggatttgcaggagctgacattgccaatgtttgtaatgaagctgctttaattgctgcgagaagtgaggaaactcagattaccatgcaacattttgaatctgcaattgatagaattattggtggtttggagaagaaaaacaaggtcatcagcaaactggagcgccgcactgttgcttaccatgaatctggtcatgctgttgctggatggtttttagagcatgcagagcctcttctgaaagttacaattgttccccgtggaacagctgctttaggatttgcacagtatgttccaaatgaaaatcttttgatgacaaaagaacagctttttgatatgacatgcatgacattaggtggccgagctgcagaggaggttttgattggaaggatctccactggtgctcagaatgacctggagaaagttaccaaaatgacctatgcgcaggttgctgtatacggtttcagcgaaaaggttgggcttctgtccttccctcagagggacgatggctttgaaatgaccaaaccttacagcaaccaaacagcatccatcatcgacgatgaggtgagggaatgggttggcaaggcgtacaaaaaaacagtggaactgataactgagcacaaggagcaagtcgccaaaatcgctgaaatgctgcttgagaaggaggtcctccaccaggacgatttggttagggtattaggagaacggcctttcaaggcatccgagccaactaactacgacctcttcaagcaagggttccaggatgaagaagacagcaagaaccaagaggcggccaaaacccctcagcctgatgatgacggaacaccctcgcttggcgaggttgtacccacgtaa</cdnaseq>

Protein Sequence

<aaseq>MSLASLARALSRRSAPSSSRARQGFSLGGLGGTTRSPPPPSSPL PSLHGGEGGGLGLGFVRGYLTAALGRPAAVKAGTDWRSILANPQFRRLFSDGSKKNYE NYYPKGKKEAPKGDGSNKSDSKQDSSTDDQWNFQETASKQLQNFLAPLLFLGLMLSSL SSSSSDQKEISFQEFKNKLLEPGLVDRIVVSNKSVAKVYVRSSPQSNSQGQNTDAIIT TNDVPSKHTPSRYKYYFNIGSVDSFEEKLEEAQEALGVDPHDFVPVTYVAEVNWFQEV MRFAPTVFLVGLIYLMSKRMQSGFNIGGGPGKGGRGIFNIGKAQVTKMDKNSKNKVFF KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSG SNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI KGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQI TMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP RGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTK MTYAQVAVYGFSEKVGLLSFPQRDDGFEMTKPYSNQTASIIDDEVREWVGKAYKKTVE LITEHKEQVAKIAEMLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQGFQDEEDSK NQEAAKTPQPDDDGTPSLGEVVPT</aaseq>

Gene Sequence

<dnaseqindica>212..278#370..600#707..781#1439..1572#2017..2502#2682..3449#4195..4422#5122..5601#ggtaaaacgccttctccccctcctcttccgccgccgcggcgatccctctttcacctccacctccacctgctcaggacgcggccacgcagtagtcgcggagaaaagaaaccgaaaagaaaaaaaaaaatctagctacgcatctcggcccggcccccccgccgccgcgcgctcggatcccccgacggctcgccgccacggcgccgccgccgccatgagcctcgcctcgctcgcccgcgcgctctcccgccgctccgcgccctcctcctcccgcgcgcgccaggcaagtctccgccctctccctcttatcttccctgaatcttccgccaccgcgtctgggtggggggctgattgtgtggatggcttttttttagggtttctccctcggtgggctaggtgggaccaccaggtcgccgccgccgccgtcgtcgccgctcccatcgctccatggcggggagggcggtgggctgggattgggattcgtccgcgggtacctgacggcggcgctggggaggcccgccgcggtgaaggctgggacagactggaggtccatcctcgcgaacccgcagttccggaggctcttctctgacgggtccaagaagagtgagtcccatccgcccttttttgatcggttcggatggatggctttaggtgctaaaagtttgtggttgtgtttttgtgtgtgtgtgtgtatttttatgatttttagattacgagaactactaccccaagggcaagaaggaggcgccgaagggggatgggagtaacaagtctgattcgaagcgtaagttgccgtcttttttttctcggttgcatcatttgtttgtgtggagaatggtgatcatgttgtgaaattaatagaatgcactgcacagcttttaatacaatagcatgtaactggtgtactgattgtcattgaaccaacgaggtgaataatcaggacatgttatttttcttgcgctgcaagtgcttggtcgactgatgccaaatggaaaaatagcttgtgtagtgcaaccaatgatggcttgtgagcctatggtgtacaaccacttacttgtcagtgttcttaaaaaacgaatgcaaactagatccttgttcagttttaaaaaaatgcagggatacactgtaatttagtataaaaactcagaacctcagtggttatctaacttaagaggctgaaccgctgaaccaaataaacacagtagcacagaaagttccagattttggtctttgctagatcgttagttctctggaaattaaaacgtgccgctgacctagcactttcatcttaataatttctttgggagattagtacgggttttgatggagattggagcctagattttagtggctggaatgccaagagtccttttgagggcaacaaaataataaactcttagtgcatcattgcgtgtgggctaatgtctggtttgatatgcagaagattcaagtacagacgatcaatggaatttccaggagactgcctcaaagcaattgcaaaattttctggcacctctactgtttcttggactgatgctctcgtccttgtcgtcgagctcatcagaccaaaaggaggtaatttttcactcccttctgagttctgacagattatattcacttgttctgctatgcacatgaatctcttcctatatactagaaaaaagtggatggaagaaaactatgttgcgattataaggactataaaagttgtacttaccccaatcaaattactgcaatcagctattgagcattctgtaataaatagttcaatacaagcagtactagatccagatggcagcaatacattcttctcaccgtgaagttttatcttaaactgacaaatggtagagaaaatacctgccgctcctctttagatggtttcaccttatgcctgcaccagtcaacatatagcagacaactgattttgtggttgcatatttattctttttaaatctatggtgaacaattattctcgatcttaaatggaatctcaagatattttgcttcaaatttctgcagataagcttccaggaattcaagaataagctactagaacctggtttagttgaccgcattgttgtttcaaataaatcagtggcaaaggtctatgtcaggagttcaccacagtcgaacagccaaggtcagaacactgatgccatcattaccaccaatgatgttccgagcaagcatactcccagcagatacaagtattacttcaatattggaagtgttgattcctttgaagaaaagttagaggaagcccaggaagctttgggagtagatccacatgattttgttccagtaacttatgttgctgaagtgaattggttccaagaagtaatgagatttgccccaacagtctttcttgttgggctaatatatttgatgagcaaaagaatgcagagtggttttaatattggaggtggacctggcaagggtggccgtggtatttttaatattggaaaagctcaggtgacgaagatggacaaaaattccaaaaacaaggttagttcattctcttcttctgttctactttgaaacgactgtcaaatatgaaatatatacatgcacattgattctcaagctctgctagttccacctattcaataatgcagtagctactgcttaaacgttgttaagttacaataaaaactgtataatgacaagcttttctgttggtccaggtgttttttaaggatgtagctggttgtgatgaagctaagcaagaaataatggagtttgtgcatttccttaagaatcccaagaagtatgaagagttaggagctaagataccaaaaggtgccttgcttgtgggtcctcctggaacaggcaagactctgcttgccaaagctacagcaggagagtctggtgtgcccttcctgtctatttctggatcagatttcatggaaatgtttgttggggttggaccatccagggtacggaacttattccaagaagctcggcaatgtgctcccagtattatatttattgatgagatcgatgcgattggtcgtgcaagaggccgtggagggttttctggttcaaatgatgagcgtgaaagtactttgaaccagctgcttgtagagatggatgggtttggtacaacttctggtgttgttgttcttgctggtacaaataggcctgatattttagataaagccttgctaaggcctggaagatttgatcgccaaataacaatagacaagccagatataaagggccgtgatcaaatattccgcatatatcttaaaaaacttaaacttgacaatgagccatcattttattcgcaaaggctagcggctttgacacctggatttgcaggagctgacattgccaatgtttgtaatgaagctgctttaattgctgcgagaagtgaggaaactcagattaccatgcaacattttgaatctgcaattgatagaattattggtggtttggagaagaaaaacaaggtaatgtgaatatgtgattatgtgccagtttgaagataatctactccaaactgttaaagcaataaatgcaacctgcaaagctgattagtgcctgatttacacattactccagcattgtgtagttctgtatagtgctctcatgtgaaccggttatgctctattttgatacacattttttgctggtttaatgactatggaagttttgtttttttaaaaaaacaaaaacaaaagaacggtacataatgactagtgcattcattaagttcctgttctaggtggaccttaattaagttaagtgatttgtgaatgtggcatgatagttcgtgtagatcactagatggttgatcatgcatgaatgtttaggtgagagtgctgtaaacaaggtaaactatataaaataagtagtggatctacatgcaaatataaaaaactctaggtcttactcagaaatggatggtcacttaagtgtacgcaaaataatgatttctgaaatttgtggctttgcacacacaatatctgcagtatgtttcccttttggaatgcccaagccataactgttttttcacctttaacttgttccatagtaaatatataaaatatctactttcagtaagggagtaatgcacagatcaatgcttagtaacttagtaactttcttttatatgaaatgacttgttctcaacatgtgatagtcatgtttccccatttatttttcttacctcttagcctgttaatcaaattgcaggtcatcagcaaactggagcgccgcactgttgcttaccatgaatctggtcatgctgttgctggatggtttttagagcatgcagagcctcttctgaaagttacaattgttccccgtggaacagctgctttaggatttgcacagtatgttccaaatgaaaatcttttgatgacaaaagaacagctttttgatatgacatgcatgacattaggtggccgagctgcagaggaggtacacactaattcttttacagtcttatgactgatttatgttaatagctaccttttgtggatatatctttcaaattcctactgctgagtgctgacacaccatttcttttcagtcttcttatgacagcatgcgtgttatgtttttatgactagaacgaatacaaggtttttctgcatttgacagctgtaaaaaaattaaaaaaaaatggttaactaggttacagtttacacattcaattatgatgacttggtgaatacgagtaatattatcacaatttggtagtcaaactcttgttggtttggttacatcaagacttctaaccatttatgactctaaccagaaaggcaaattgatgtttgtgtgtcttcatattacactgttggttagcatgaattctttgatgtttaacatggtactttctttttttgcttggaccatatgcttatgtacggcgagactcgacatggattgccgtcatgccatttgattactttaacatcggtcctctctcattattttcagcttcttccatacattttacttattgtcatataacataatgaaataacaataagccaatccaagtgctgggttgtggtatttgttcattccatatttccatgattacgctgtcaaatcgttcacaatgttggcagtggaatgatacctaatgtagatgttttgattgccttgttacaggttttgattggaaggatctccactggtgctcagaatgacctggagaaagttaccaaaatgacctatgcgcaggttgctgtatacggtttcagcgaaaaggttgggcttctgtccttccctcagagggacgatggctttgaaatgaccaaaccttacagcaaccaaacagcatccatcatcgacgatgaggtgagggaatgggttggcaaggcgtacaaaaaaacagtggaactgataactgagcacaaggagcaagtcgccaaaatcgctgaaatgctgcttgagaaggaggtcctccaccaggacgatttggttagggtattaggagaacggcctttcaaggcatccgagccaactaactacgacctcttcaagcaagggttccaggatgaagaagacagcaagaaccaagaggcggccaaaacccctcagcctgatgatgacggaacaccctcgcttggcgaggttgtacccacgtaatcctgcagcaaatttacagctgtaaattgcactcctattcgatagattcttgtttgttgttgcagcataagaaaatttgtataaattaacgccctcgcctaatctctgatgtgggaacccagttggcttttcgccggccatagtgtttccctgttttaaatgaatacgaagagctagtcgaggatcatgatttgagc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0458400, RefSeq:Os05g0458400