Os05g0459600

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Revision as of 10:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0459600| Description = Protein of unknown function DUF246, plant family protein| Version = NM_001062286.1 GI:115464302 GeneID:4339009| Leng...")
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Gene Name

Os05g0459600

Description

Protein of unknown function DUF246, plant family protein

Version

NM_001062286.1 GI:115464302 GeneID:4339009

Length

6107 bp

Definition

Oryza sativa Japonica Group Os05g0459600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:22626148..22632254

Sequence Coding Region

22626148..22626570,22627836..22627924,22628573..22628770,22629431..22629635,22629705..22629872
,22630051..22630218,22630300..22630490,22631732..22631835,22632241..22632254

Expression

GEO Profiles:Os05g0459600

Genome Context

<gbrowseImage1> name=NC_008398:22626148..22632254 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:22626148..22632254 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgggccagacgtacagccgcctcggcagactcggcggcgcgccgtccccgccgccggtgccaccggctgtggcggcggtggcgtccctgcagcggggcgggggcgggagtgggaggaggacgccgggtaaggggggctcggcgtcggcgtcggcggcggcggggtggacgggggtcgggtgcggctgcgcggcgaggagggcggcgagggcggtgctcgcggcgctgcaccggaggcaggcggtgttcctgttcgcgccgctgctgtacgtcgcggccatgctgctgtacatggggtccatcccgctcgacgtcgtgccgcggatcgtcgcgcgcccggcgcccgggtcggtgtaccgcagcccgcagctgtacgcgcgcctccgcgccgacatggacgccgacaactccaccgacgcgatatgcaatgcagttgctatcgccggtttcttgaacgccactcttgttatcccaaacttccatttccatagtatttggagggatcccagcacattcagcgatatttatgatgaggctcactttgtaaaacgtcttcaaaatgatgtacgagtagttgaaaaggtgcctgattttataatggagcgatttggccacaatcttagcaatgtattcaatttcaagataaaggcttggtcccctattcaatactacaaagatgctgttcttcctaagttgattgaggaaaggctcatcaggatttcaccctttgcgaaccggctgtcatttgatgcccctccagttgttcaacggttgagatgcttggctaattttgaagctttaaaattttccaacccaattgcgactctatctgagaccttagtctctcgaatgaaagaaaaaagcacggcgagcaatgggaaatacatcgcggtgcatcttcgttttgaggaggatatggttgccttctcatgttgtgtctatgatggtggtgatgaggagaagaaggaaatgaatgcagccagagaaataggttggagagggaagttcactaagcgaggacgtgtaataaggccaggagtgataagaatgaacggaaaatgtccactcacacctttggaggttgggttaatgcttcgtggaatgggtttcagcaataatactgcaatttttttggcttctggaaaaatttacagagctgagaagaacatggttcctcttcttgaaatgttccctctcctacagacaaaagaaactttagcatctgctgaggaacttgctccatttaaggatttctcctcgaggatggctgctattgactacagtgtttgtgtccatagcgatgcttttgtgactacacaaggtgggaatttccctcatttccttatgggtcacaggagatacttgtatgctgggcattcaaggacaattaaaccagacaaaagaaaactagccatactatttgacaatccacgtattggcatcctatttttggggaggcgcatagttcatggaggtactcccaacaaggctcgctgtgctcaggcttatccgaatgatgcatttggctacgcccgccttcatgaatgcgcggcataa</cdnaseq>

Protein Sequence

<aaseq>MPGQTYSRLGRLGGAPSPPPVPPAVAAVASLQRGGGGSGRRTPG KGGSASASAAAGWTGVGCGCAARRAARAVLAALHRRQAVFLFAPLLYVAAMLLYMGSI PLDVVPRIVARPAPGSVYRSPQLYARLRADMDADNSTDAICNAVAIAGFLNATLVIPN FHFHSIWRDPSTFSDIYDEAHFVKRLQNDVRVVEKVPDFIMERFGHNLSNVFNFKIKA WSPIQYYKDAVLPKLIEERLIRISPFANRLSFDAPPVVQRLRCLANFEALKFSNPIAT LSETLVSRMKEKSTASNGKYIAVHLRFEEDMVAFSCCVYDGGDEEKKEMNAAREIGWR GKFTKRGRVIRPGVIRMNGKCPLTPLEVGLMLRGMGFSNNTAIFLASGKIYRAEKNMV PLLEMFPLLQTKETLASAEELAPFKDFSSRMAAIDYSVCVHSDAFVTTQGGNFPHFLM GHRRYLYAGHSRTIKPDKRKLAILFDNPRIGILFLGRRIVHGGTPNKARCAQAYPNDA FGYARLHECAA</aaseq>

Gene Sequence

<dnaseqindica>1..423#1689..1777#2426..2623#3284..3488#3558..3725#3904..4071#4153..4343#5585..5688#6094..6107#atgccgggccagacgtacagccgcctcggcagactcggcggcgcgccgtccccgccgccggtgccaccggctgtggcggcggtggcgtccctgcagcggggcgggggcgggagtgggaggaggacgccgggtaaggggggctcggcgtcggcgtcggcggcggcggggtggacgggggtcgggtgcggctgcgcggcgaggagggcggcgagggcggtgctcgcggcgctgcaccggaggcaggcggtgttcctgttcgcgccgctgctgtacgtcgcggccatgctgctgtacatggggtccatcccgctcgacgtcgtgccgcggatcgtcgcgcgcccggcgcccgggtcggtgtaccgcagcccgcagctgtacgcgcgcctccgcgccgacatggacgccgacaactccaccgacgcggtcagtggctcctcctttgcaggtttactgctgtgtgtgtgtatttcagttgcaatgtggcacaaatgtctgaccattatgatgattagctgtgtctgctcctgtaatgttcgtattggtttggtgtagagagtgtttcagttaactgagattttgtttgctctttcgcaaatttatgttgttgcgaggtgacagggacagctaattttatatcaaatctgaaaatgggcgacttaagcttgcactaacaaaattctcagcccttgcaactgcaaggccattgattgcctgactaagaattgtttaatttctgctacccttccagttgttctaaattgctcggtgggtagattgctcttcatcagctgtcatgaaatgactgagtgatgaatcaaattagaactaagcgggtgtgtattctgtacccatcttatatgatgcaatacttatgcaaaggatcttcagtaaagcatgttagttagagtggtgtacaagaacattctttttcatgtatttgcagatgttttcctttcctatttcaaattaactgtagcaatggtcacttcttatttacttttgtgctatttccatctttggttgtttcactcgtactgatatttttctagcttgcaaccctgtggaggtacaaaggcagtctctggcgaccttgcataaacaatgctaccaatagtatgtcatttactggacttaaccttctcttttctttatggaacaagacacaatagatgttaaagtttgcccatgttcctgttttctaaaattgcttatttttccttcaggaatgtttttaatgtaatccaatgagttttacttgttatttttccataaacatattacacttatgttgtcacataattgggtaattgggtaacatagaaagagttagcttatgaggaatttagatatttttgaacatgttcaacgcatgattatatctccctctttttttggcaacttccatgccatgtgggtgggtgccttttttacacaatcgaatgctgacagtatttcaggttaccaccttacaatcttttttttacttttttattaggtctgcctgaatcaaatggatacatatatattgaggcaaatggtggtttgaatcaacaaaggacatcggtaattgcttctcctcagcagttcattccttccaacagtttacattcgttctcgccatgccttttgtttgtctatcttgagttactcacttttgtttcacttgtgtttttctttctggttttcagatatgcaatgcagttgctatcgccggtttcttgaacgccactcttgttatcccaaacttccatttccatagtatttggagggatcccaggtattttcttattagacttagcagttagcacgtaaaactggcatgacagagttggaccctctcgtgaattaaaaaatgccatacactaatcaccttctaatagcagagaataaaataatgattgcatgcataacaaaggatgtaggaggtgttaacagaatgtaaatgcgtgcttgcatggttgtcaacttgtcacattgtcatctgcactagttctcccattctatggctgcatattcttaagatcacatatacaaatttgtagatgtggagagtgacttgtacatgactgcacaggtatcacataaaaaggccaaagtttgtaatggttgtttcttagttgtctgtcatatcaaggactgtaagagttattctggcagttctaaaagtatgtgattaatcaattctagcagacacattggctgacttgtttgttgaatggatgtagctttgggtcacctgttgcaaacttgcattcttatcaagttctttaacgatcattgtttttttggaaatgaattcaactgttctatacacttagtaaacgttgatctatatgactgaagaaagtaacatctatggttattagaaatcgatgcttatggtaacaaaaaaaaaacagttactgatatatccttttggatacagcacattcagcgatatttatgatgaggctcactttgtaaaacgtcttcaaaatgatgtacgagtagttgaaaaggtgcctgattttataatggagcgatttggccacaatcttagcaatgtattcaatttcaagataaaggcttggtcccctattcaatactacaaagatgctgttcttcctaagttgattgaggaaaggtgagatagaaactaatccagttatttatttaatgacttaaacttacatatgcacccgattttccccaatatcctcacttggaccaggccgacccaatgcccgcaacattttggactcacttgtttattattgtaacatgtagatttcgttttgtctttataatcttagatgtagttaacataacctcattatatgattactataaaaagagtataaaacttagagaaactgcgctaacagggaatcaccaaagaaagttgattcagacatcccaccacataattttgtttttactcaatgttgtattgacctataattatttagtgtagagcatcctaatattaacagttttcactcacctatagtgtgtatcatctctttaacccatatcattaaatttgtcctagtgggattccagaatcttggatatcagccataggagtttgagtcaccattctaaagaatgttaaattggttacagcttgatggcctgatgcttctctctacatctagatggatcaataaattatgaaatttgtagagttaatagcaaaggactgtttccctgtttacgtagatacgtagtcaagataatgtggaattttgcctgatgctgtttgtttaaaaagtgacatcttttactactatgcaaagcgcaggctcatcaggatttcaccctttgcgaaccggctgtcatttgatgcccctccagttgttcaacggttgagatgcttggctaattttgaagctttaaaattttccaacccaattgcgactctatctgagaccttagtctctcgaatgaaagaaaaaagcacggcgagcaatgggaaatacatcgcggtgcatcttcgttttgaggaggttggattctttcctagaagatttacctatctttagtagcggaggtatccactaactgtttccttgcaggatatggttgccttctcatgttgtgtctatgatggtggtgatgaggagaagaaggaaatgaatgcagccagagaaataggttggagagggaagttcactaagcgaggacgtgtaataaggccaggagtgataagaatgaacggaaaatgtccactcacacctttggaggtactaccatgtctaatagcagaaatactgcccgtagtggagttttagaactttcgtctcaatctcattatgctgctccatgctcttctcattttcttttcacccataacatcaatttaatataggaacactgcaggaattatcaggaagatttacttgcttatgttacaattttcaggttgggttaatgcttcgtggaatgggtttcagcaataatactgcaatttttttggcttctggaaaaatttacagagctgagaagaacatggttcctcttcttgaaatgttccctctcctacagacaaaagaaactttagcatctgctgaggaacttgctccatttaaggtattgtggtagttgcaacttctctttgtgtggttctagattttgttctattcattactctaaaggatttgtggttgccaggatttctcctcgaggatggctgctattgactacagtgtttgtgtccatagcgatgcttttgtgactacacaaggtgggaatttccctcatttccttatgggtcacaggagatacttgtatgctgggcattcaaggacaattaaaccagacaaaagaaaactagccatactatttgacaatccacgtattgggtatgatgttgtgccgtgcatttacttttatgtacttttttttcaggccgtatagcattttctacgctataaacttcatgttgatagtcaattttctctgtttctctgcagatggaaatcattgaaacggcacttgcttaatatgagaacacacagtgatgctaagggggttgaaatgaaaaggcctattgaatccatatacacctttccctgtccgaactgcatgtgtcgcttgaacagaacagaaaattctaaacacaatcaaactagatagcatctcaagtgccatttcagtggactaactttattctttctggcttcatggtataattggttctggttcattacttcagtgagcattaccttatcacatcattgtacagtaacccattcttttccggtgacagtttttttctttgtccttgaaatcatagtccatcctggagctaagaactaacaatacatttgctcattagcattcaacaaacagatctgacacctgtagagctgtagttgtagtcagtgaaatatcaaccagtttgatgtagtactaacccttgtacatgtgtatagttgacaatatgatgtatgatactatacaaattttgaatggacaacaagtatttgtgaatttgatttttgttttttctatcttgctctaaaaatggcagctaccaccattttccccctttgtgttctatagctaggtcttctcctctgttgcaactttgtctgacactgcactattttcaactgaaatagcaagatgctctacttgattatctctcatgttgacccaaaaatactatcatctcacttttatatacttgtcaagctgcttggtgatgagaatctctgaaagattaccccgattgatcaagtttttatcatctgttcatcttctgcacatggtaaaccattccttccttgtttgtacatgtattctgaatacttcattgagttcattctggtgtagtaggaccgaacatttaactttggcagagccagcagcaggctttggtcactgaagtctgaaggtggctcacatgcaagaccgttggtgagcaatgggaatctgggtctgacgaatactcgttcatattaaacgacaagtcttgacgaaatgaagccagtctgcctgccagtgagctcaacatgtctgattttagcttcccttttcttttttttcccttaaaaatggcagatttagagtaacccttttcatcatcctttcttatcagcatcctatttttggggaggcgcatagttcatggaggtactcccaacaaggctcgctgtgctcaggcttatccgaatgatgcatttggctacgcccgccttcatggtgagaaaaaaatgttttcctttcctcttgcctttcacgtgctttgtttcgtccccccaaagaaatctctctatcggcagacaaacaactgaagcctgcattaaaaagagcaaaaatcattagccaaaactattcttcctaggtgcctttttccaaaatgaatttagtctagatcccatgcaagtactgatctgtaggtcctgggcagtttaatgaaggcgttctggctctttttttttctttttacctgccctctattgggcttagatgtttgatgtttcgttacataagatatagtgggtaagaaatggaatccgctcttcatgaaacacaaactgcaatagcaaataggagacggatttttttgtcttgcactcttacctgattcttgattcttccatgtagaatgcgcggcataa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0459600, RefSeq:Os05g0459600