Os08g0530000

From RiceWiki
Revision as of 20:53, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0530000

Description

Similar to Uridine kinase-like protein

Version

NM_001068857.1 GI:115477452 GeneID:4346121

Length

5380 bp

Definition

Oryza sativa Japonica Group Os08g0530000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:26477744..26483123

Sequence Coding Region

26477840..26478062,26478154..26478245,26478969..26479038,26479142..26479260,26479827..26479923
,26480028..26480107,26480233..26480427,26480511..26480594,26480707..26480767
,26481655..26481715,26482147..26482240,26482332..26482404,26482518..26482600
,26482691..26482834

Expression

GEO Profiles:Os08g0530000

Genome Context

<gbrowseImage1> name=NC_008401:26477744..26483123 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:26477744..26483123 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgccgcgatggagtcggcggtggggccgcacttcagcgggctccgcctcgactcgcgccgcctctcctcctcctccctccccacctccccctccgccgcctccagcaacggctgcggcggcaacgacgcccccgccgcggttaacgggttcgcgccgccgccgcccccctccgccgccgcagccgcggaggaggggagcaagcagcccttcgtgatcggtgtgtcgggagggacggcgtcggggaagacgacggtctgcgacatgatcatccagcagctgcacgaccaccgcgtcgtgctcgtcaaccaggattcattctaccgtggtttaactgaggaagaatctgaccgtgtgcaagattacaactttgatcacccagatgcatttgatacagagcaacttttagagtgcatgggacagcttaaaagtgggctatctgtaaatattcctatatatgattttaagaaccaccgtcgatgctctgaaagttttagaaaggttaatgcatcagatgtcatcattttggagggcattttagtttttcatgatcaaagggttcgtgatttgatggatatgaaaatttttgttgacacagatgccgatattagacttgcccggcgtataaggcgtgatacagttgaaagaggtagagatgtcatctcagtgctggagcagtatgggaggtttgtgaagcctgcgttcgatgattttgttcttccttccaaaaaatatgctgatgtgatcataccgcgagggggagataaccatgttgccatagatttaattgtgcaacatattcgtacaaaacttggtcagcatgacttatgcaaaatctacccaaatgtttatgtggttaatacaactttccagatacgtggaatgcatactcttattcgcgaccgggacattgcaactccagatttcgtcttttattcagatcgtctgattcgtctggtagttgagcatggactggggcatttgcctttcacagagaagcagattgttacaccaacagggtctacttacatgggagttgacttttgtaagaagctctgtggtgtgtcaattattcgaagtggagaaagcatggagaatgcattacgtgcttgttgtaaggggattaaaataggcaaaattctaatacatcgggatggggacaatggacaacagctcatataccacaagtttcccttggatattgctgaacgacatgttctactcatggatcctgtgcttggtacaggtaactcggcaaatcaagctatagaacttcttataagtagtggagttcctgaggagcggatcatgtttctcaatctcatctcggctcctgaaggggtccattgtgtctgcaagcgattccctcgtctgaagattgtaacctcagagatcgaaactgggttgaacgaggagtaccgggtgatcccagggttaggagagtatggtgatcgctacttcggtacagactaa</cdnaseq>

Protein Sequence

<aaseq>MDAAMESAVGPHFSGLRLDSRRLSSSSLPTSPSAASSNGCGGND APAAVNGFAPPPPPSAAAAAEEGSKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVL VNQDSFYRGLTEEESDRVQDYNFDHPDAFDTEQLLECMGQLKSGLSVNIPIYDFKNHR RCSESFRKVNASDVIILEGILVFHDQRVRDLMDMKIFVDTDADIRLARRIRRDTVERG RDVISVLEQYGRFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHD LCKIYPNVYVVNTTFQIRGMHTLIRDRDIATPDFVFYSDRLIRLVVEHGLGHLPFTEK QIVTPTGSTYMGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGQQ LIYHKFPLDIAERHVLLMDPVLGTGNSANQAIELLISSGVPEERIMFLNLISAPEGVH CVCKRFPRLKIVTSEIETGLNEEYRVIPGLGEYGDRYFGTD</aaseq>

Gene Sequence

<dnaseqindica>97..319#411..502#1226..1295#1399..1517#2084..2180#2285..2364#2490..2684#2768..2851#2964..3024#3912..3972#4404..4497#4589..4661#4775..4857#4948..5091#acccaatccgcgtgtcaaaacctccggcctccgcaccgtgcgcgccagctcagcacgtcggcggcggcggcggcggcggcgacggcgaggggagagatggacgccgcgatggagtcggcggtggggccgcacttcagcgggctccgcctcgactcgcgccgcctctcctcctcctccctccccacctccccctccgccgcctccagcaacggctgcggcggcaacgacgcccccgccgcggttaacgggttcgcgccgccgccgcccccctccgccgccgcagccgcggaggaggggagcaagcagcccttcgtgatcggtacgcactcctccgcccgctctctctctctctcgtaatcgtaatccttggtggtgtttgttttgaattttggtggttgtggttggcgaaggtgtgtcgggagggacggcgtcggggaagacgacggtctgcgacatgatcatccagcagctgcacgaccaccgcgtcgtgctcgtcaaccaggtgtggtgtgcctcgttgcatcgtcaggatgcatatcatgtctgcttggttggttgctatatgcatatgcttgcctagtagtgagatttcgtgtttcgagcgttttgttcaatcagccaatccgttgttgcagtgatcagtgtatggtttgttgttagtacaaaataacttacggagtggaacatattgtgatgcggtaggtccaaaaatgacatgatttgaacagtcaaggtcgaggatgagtatggtactccactttcttgtatgtgcagtttgtatgcatcctaatgcctaaacatgtagggcctttcgtgcagtattatattttttcttctctgtaccattcatagcttgtttcttttctttaaggcaagcaggcagaattgctatttgtgcaagttgtcaaaaggggaaatgcgttgtgaaaagaacttctttcggagcagcttgaacaaaatgtgcatttgattaaatcattgcctgcgtattggcaagctagaagcatgaaattgctttcatattcgcatctgtattcagttgtgtgtcttgtatggttggctgtggtttcttgctcagttgggtgaatgctgatctgggtacttgcaagttgctgtcatttgaataagagcttcatcaaaagagcaaagactagttgttgactatgtctgatagatcatttctgcaattattctatatacttcagctaaagtttcaattttgcaggattcattctaccgtggtttaactgaggaagaatctgaccgtgtgcaagattacaactttgatcacccaggtgcttgatttgataaaaattgattgccttttgagttctcgaggtttcaatctgctttacgttgggaagagactaagatattttcgttctttcttttttgcagatgcatttgatacagagcaacttttagagtgcatgggacagcttaaaagtgggctatctgtaaatattcctatatatgattttaagaaccaccgtcgatgctctgaaagttttagaaaggtagtaatgtcgttgttgacctttggtgtgaaaaagataattcctgtttatctattgttattacaccttttatctatgattaattactggttgataactttgtatgcaaaggtcttatgtagattgatggcatctggtgtgccttatttcacattctgttctagaaatttggtgccaaaatattgaatctataggcacatagttaagtagtgtactatgaagtctccattaataaatgagctacacatgctaaaagagtatactataaagtgaccttttttgtgggcggggaaaggatataaggatatgcaatataaagagtacatcatatgtctaagaagctactgtggaccttgctcaacctatgtagcagttatgattcatgaaattttttcataaccaacccagccctagtttcgccatggcaataatttatgggtggtatttctttttctgttcagtgtcgttgttggtctattttctggatttctttaatggtagtgaaacctaatgaattatgattgttaattaggcttaaaaaccttttgactattttgttttcttaggttaatgcatcagatgtcatcattttggagggcattttagtttttcatgatcaaagggttcgtgatttgatggatatgaaaatttttgttgacacaggtttgttgctcctctttgttaggtataatataatagatattatggtaacaatatcgtttgtgatcattcacctttatccctttgtattttatgcatcaatttagatgccgatattagacttgcccggcgtataaggcgtgatacagttgaaagaggtagagatgtcatctcagtgctggagcaggtaatttaaacacccgtctatgttattttagtctttttctatttaaatatgtcacaaaatctgcatgccctgatgtttgtaatacatatgtaatgacacttttgatgaaccttattgaattgtagtatgggaggtttgtgaagcctgcgttcgatgattttgttcttccttccaaaaaatatgctgatgtgatcataccgcgagggggagataaccatgttgccatagatttaattgtgcaacatattcgtacaaaacttggtcagcatgacttatgcaaaatctacccaaatgtttatgtggttaatacaactttccaggtacaatcaatagtttctctcgatcctaagtttcataatgttattttattcccaacccatggttataaacactcgattaacagatacgtggaatgcatactcttattcgcgaccgggacattgcaactccagatttcgtcttttattcagatcgtctgattcgtctggtagcactcattctttttggcctctgtacccttctctagttctacatagctactgaatgtgtctgactgtttattgatgtgttattcatgtggaaaataaatatattgctaggtagttgagcatggactggggcatttgcctttcacagagaagcagattgttacaccaacaggtgctttgctggttccattatactttgcgcctatttatttttgttcttggaatttgccctatataaatccattagcatatgccagccagaaaaagaaaaagtaacaccttaagtatgtttggaattatctcttagtggtagcaacttagtatatgctctggaggttttcttaacaatgtttctatggtatctaagaatagtgtttgtgaactgtagaaatggaaggacagttttggcaaaactggatctgctatatataccattatgaaagtgtgggatttgacatttccaattgcatgtttatggttttgcccagagccatttgaatccatggtggttttactaagaaccatttttgtgtctttgcaacaagcaatgggaaatatgtttttgcaccgctccaataaaataggtctaaaatgataaagttgtgcatctaaatttcaacaaacacttacctattatcttttgtcctgaaaaataacaaggagcaacaagagctccaataacccctttacaattttactactgattttaattttatggcgataaaggagcttctccattcaaagtggaaaaatatggaatgtaagcagctgtgaatcaaatgaatctaaccatcttggttcaatattcattgccaagagaaatcttgaatctggggcttctaaaagattgttgtctgatcacccaattacttcatgaattattcttttttataaaggtccagcttcactggcattgtattaataaagagaaagcaaagcgctgcaattactggttgtctacagtttcacgcacgtagcactgtccatttatgttaatgtaaacaaatgttggaaggttgcacatttatgacgtcatactcattctgttcttttgtccagggtctacttacatgggagttgacttttgtaagaagctctgtggtgtgtcaattattcgaaggtaagccattgctttcctgaaaactaatagcttcaaatgcaaaaaaaaagttggattatctgcagcttctagtgttgaaccttcctttaatggttaataaaacctgagtgaatttctataccatataagttcttttgcagattattgtgtatacattgatttagtgttcagtgatgaaaatctttattcaatactactctgtcccaaaaaaaaacgaattcctagctacgaacctggatacacatgtgtccacgttcgtaggtaggattggtctgttttttgggacggaggggtatgtatttggtactcataactcagcccatgctgaccagcagtgtagtttagttagacttacgacccatttctttgatttatttttatccttatgtacttactgcatgaaataacttggtatatatgttgttttgcagtggagaaagcatggagaatgcattacgtgcttgttgtaaggggattaaaataggcaaaattctaatacatcgggatggggacaatggacaacaggtgaaatgctttgtagttttcttgaaaataccatggaaatagttcactttctgcgaaattttgaacggaccttgtttttccccttgtccagctcatataccacaagtttcccttggatattgctgaacgacatgttctactcatggatcctgtgcttggtacaggtagtgttgaatttatccaatgctcctttcatagtgatgtttgcttgcttgtcggaatgagaactactgaagtcacagctaaagtttcttatcataactattcaactgtacaggtaactcggcaaatcaagctatagaacttcttataagtagtggagttcctgaggagcggatcatgtttctcaatctcatctcggtaaaatactccagctctttgacatggttaatactgatatagtacatgattcattttgtgcaaacttggtaatggcatttcgatgaacaggctcctgaaggggtccattgtgtctgcaagcgattccctcgtctgaagattgtaacctcagagatcgaaactgggttgaacgaggagtaccgggtgatcccagggttaggagagtatggtgatcgctacttcggtacagactaatcagggattgatactggcttctttggcgatgtgaaaagatcacattagagctaacattaccgtgagagagatatatactggtgtttggttgtttgtggtataccattggaggtaccgaaatcgtgcgatttcgtgtgttagtgtttgctgctgtgataaaaacttcgggtgttgaattttgaaggcccctgtcgctagttacagcggcgtgtgaaaaaagggaaaaatttgtgacatgtagagcccacttctcgggcctgaatgcggcagatgccgtgtggtttcactt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0530000, RefSeq:Os08g0530000