Os08g0556700

From RiceWiki
Revision as of 20:54, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0556700

Description

Myotubularin-related domain containing protein

Version

NM_001069013.1 GI:115477764 GeneID:4346290

Length

9255 bp

Definition

Oryza sativa Japonica Group Os08g0556700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27947068..27956322

Sequence Coding Region

27950033..27950299,27950667..27950751,27951200..27951363,27951763..27951894,27951982..27952081
,27952543..27952608,27952693..27952756,27953026..27953099,27953186..27953466
,27953625..27953674,27954118..27954187,27954312..27954380,27954703..27954777
,27955703..27955777,27956134..27956181

Expression

GEO Profiles:Os08g0556700

Genome Context

<gbrowseImage1> name=NC_008401:27947068..27956322 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27947068..27956322 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacggctccggcagctgggacgccatagactggaaccaaatcaaggagccgaggccgccgcggagttcgtcccggggcatggaggacttcctcctcgaggatgaggaggtttacgcccagggtcatggtgttgttctactaaacacagatgaggctggcattctttcagtgacaaatttccgacttctctttgtgagccaagccacaaaaggcgttatagagttgggtaccatcccactaactgcaattgagaagataaatgatgacgtaaagcttcaacccttgccccgccagcatgataagaagcagccccgtgaacttcttcaagtcatcggtaaagacatgagggtcattgtgttcgattttcttcctaaaaccaagcagaaaaacgaagtgtttgatgctttgagaagatatagcaaacctactcatctgtgggatctatatgcattttcttgtgatccctccactgtttatcagaaatctgatccaaagatgcggctcttgaaggaataccatcgcctttttaggaaatggttcccgcatagtggatccgagttcgaaaaagacttgcgtaatgaatggtggagggtaagtaaagtaaattccacctactcactatgttcgacgtacccatctgcattgattgtgccaaggagcataagtgatgaagatttattgcaagcttcttctttccgatccggcagacgcttgcctgttatttcgtggtgtgaccctgggtctggagctgttctggcaaggtcatctcagccattggtaggattgatgatgaattttcggaacaataccgatgagaagcttgtttctgctctttgcacccaaattattgatgccactgggtctctaaggaagttatatatagttgatgcccggccaagagcaaatgctttagcaaatggtgcaaagggaggtggctcagagtcagcatcaaactacccaagatctgaggttctctttttaggaatacaaaatatccacacaatgagagatagtctttttcgccttagggactatgttgatacccatggatcagtatcatcaaatggaacatcatcagctgtatctcttgttggagaccggagaaatcgtggatcaacctggggtggagggaatctgaatagcatgacacaattttcttcaatgttaggggagtggctaaaccatatccagagtatcatggtcggtgcttcgtggattgctgcacaaattgtccaagaatcagcttctgttctcgtccattgcagtgatggttgggaccgcacaactcagttggttgcacttgcttgtttgttgcttgatccatattatagaacgttcaatgggttccaggcccttgtggaaaaggattggctagcatttggccatccatttgcagagcgaatgggagttccaacgataactgataataatagtggatcacagtttgagctgctaagacaaccttctcttgggactttgagcaattcaccaaacagaggtgctttaggatcatcagtgtcaacgtctaatactacttctggtcaatcccagacatcaaacaactcttcacccatactgttacaggtaatctattctttcttgggcgccctgtgttaa</cdnaseq>

Protein Sequence

<aaseq>MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHG VVLLNTDEAGILSVTNFRLLFVSQATKGVIELGTIPLTAIEKINDDVKLQPLPRQHDK KQPRELLQVIGKDMRVIVFDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVY QKSDPKMRLLKEYHRLFRKWFPHSGSEFEKDLRNEWWRVSKVNSTYSLCSTYPSALIV PRSISDEDLLQASSFRSGRRLPVISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLV SALCTQIIDATGSLRKLYIVDARPRANALANGAKGGGSESASNYPRSEVLFLGIQNIH TMRDSLFRLRDYVDTHGSVSSNGTSSAVSLVGDRRNRGSTWGGGNLNSMTQFSSMLGE WLNHIQSIMVGASWIAAQIVQESASVLVHCSDGWDRTTQLVALACLLLDPYYRTFNGF QALVEKDWLAFGHPFAERMGVPTITDNNSGSQFELLRQPSLGTLSNSPNRGALGSSVS TSNTTSGQSQTSNNSSPILLQVIYSFLGALC</aaseq>

Gene Sequence

<dnaseqindica>6024..6290#5572..5656#4960..5123#4429..4560#4242..4341#3715..3780#3567..3630#3224..3297#2857..3137#2649..2698#2136..2205#1943..2011#1546..1620#546..620#142..189#gcgtcgcctccctctcacgacaagcaaacccaacccaaaccaaacacgagccggacgagacggagcgctccctccctctctgtcgcccgcgacgccgcgaagccgcgggcgccaccgccgccgccgccgccgccgccggagatggacggctccggcagctgggacgccatagactggaaccaaatcaaggtcagtttgcttccttccttcctcggtggtgcgcttcatccctcccttcctcctgcctctccatcgatttctctcctcgctctcctgcctgcgtcttcgcgggtgtggctgtctgcgacgactgcgcttgcgggaggggagctggcctgtgggtttgggatcctcatgcgcgggcgcggggccaccgcctgccgcgcggagaggcttcatcttctctcctctcctctcccgataagtgcgcgagtcgttgcggggggcggttttgatttggagatagggttcggttgctgttttgggggtgatctccgatttcacgttttgtttctattgatgattttgttctctccgctttctaggagccgaggccgccgcggagttcgtcccggggcatggaggacttcctcctcgaggatgaggaggtttacgcccaggtaatcgcctccttttcccccacatctgtgactgaattcctccagtttcgatgtgcaagcttcatttcggacggaaatctccgaatcagttgcgtgacgtggtgctttactaaccttgcaatatgctttgtcgattgccctttggattaactcatcaaattcattcattactgcctagaatgattcgccggactatcctgattgcaatgcacccatccattccctgttcactgataataagtaggccattcacaattgacaattctcctctcaataacacaaccggggcagcagaatctgtcacaatgggcagcgcatttctagtgctattgttcaactgcagcagtacaagtagtacaccaattgcctatcactcataatctgtaggccattcacaattctgaatgacacaaccggggcaggataatctgtcacaatgggtagcacaattttagtgctatggttgaactgcggtggtacaagtttaagtagtacaccgaacgggttctaggccgcttacagtggagttaatggaagcaataatgtacctagtctggatgtacattttatcagggaaacttttacgtaaacactaacgatttttgcacattttcacctactaaggcacaccaattttctgtgcgtaatctagtgatcatgatttcccactttcaaattttgatacatttttgcggagcctgtcggcttccagatcatcaccttttcaagggtatttaatcttggatagttgtttttgagccttttggttcttataaaatcctagggacaattatactccatgagtttgtaatcaaccaatgtgtttcagactgaaaccaaaagccttacacagacagaaacagctgcttctgacttttgctcttttacatctctaatttggtccctcttatatctccttatttagggtcatggtgttgttctactaaacacagatgaggctggcattctttcagtgacaaatttccgacttctctttgtggtaagcaatcatattattagttttatcacaattattagaaacaattcgacgtgatttggatgcctcctgcatgtctatacaagttcattctactatacaacattctccgtttgttccttatatgttctctcaatttttttccatcgatttgaaatatgaataatgtcttgtttgctttttgagtgggaatttagtatattatgacccctgtttttttttttggcttgaactaagcattctaatgatggacagactgctccctcagtcctttccttttcatattactcttgttcttcttttataaatgctaccccttttacagagccaagccacaaaaggcgttatagagttgggtaccatcccactaactgcaattgagaagataaatgatgtaagtctataatttccttcattgggaagttcatgttttcaagtcttcttttgggttcatggccactattccattttctttaattcattctataagtccttagaaaatattgattctgtggcaggacgtaaagcttcaacccttgccccgccagcatgataagaagcagccccgtgaacttcttcaagtcatcggtaatatatttttttctttttttactttgtaagtcagctttgaacacaattcatatatttacagtcctacttaatcatgactgagtagatcttggcagaaatttgtaaataatctgtcttgagaaggtattcatggtgtgcctgaaaggatctatgttgacatagtattaatactgccagagacctctattacatgtcctcttgtaattgaatccatctttcgttggtgggatatgaattaaaaacaataattatcttcttgaaccattctgtgatttctgtgcgataatgccattttccttgttcttttaccatagtatcgccatttttattggtgatttttcagtctatgtatgtgttaataattttacctgacatctaaagtagtttgcaaatgtatcttgttttgaccttacctttaacttgatctttttttcatccaggtaaagacatgagggtcattgtgttcgattttcttcctaaaaccaagcaggtagaaatcctgtttcattctaatattcttttgtattatattttgttctattctccatttgttgggtgatgcatcgttaaaacctcatatggtctcatactttgttatgtcatgtattttaatcttttgtgtttcatttctgttacttatcttttcagaaaaacgaagtgtttgatgctttgagaagatatagcaaacctactcatctgtgggatctatatgcattttcttgtgatccctccactgtttatcagaaatctgatccaaagatgcggctcttgaaggaataccatcgcctttttaggaaatggttcccgcatagtggatccgagttcgaaaaagacttgcgtaatgaatggtggagggtaagtaaagtaaattccacctactcactatgttcgacgtacccatctgcattgattgtgccaaggagcataaggtacttttataccattcataatatcttgtggtaattttattctcttacacatgctcagcaccaacattttttttattatctgttagtgatgaagatttattgcaagcttcttctttccgatccggcagacgcttgcctgttatttcgtggtgtgaccctggtatgcatgcttacgttttgccaataaatttcatcattattctctgcagtcttatgctccctatattttggaaaggctgatgactgttggtgaatggtcttatgaattatgacctcattgccattccttttatatttatatagttcataattgttccgctactttcagattttgggggtaacactgtaacatcattaatataaagtatcatgttggtttcagttccctttatacgacatgcataaaacttgagtgtgtttgtgttacagggtctggagctgttctggcaaggtcatctcagccattggtaggattgatgatgaattttcggaagtgagaccatatccatcttaatttatttgatgcatgcactgacttctgaatgccgttggtctaaacatatgtcattctttgcagcaataccgatgagaagcttgtttctgctctttgcacccaaattattgatgccactgggtctctaaggtaatggaagtatacatcatttcattctatgtttgttagtctcttctgacatcattgaaatattgtcttctataatgttgctatttccacttactggctatatttttataagttgtttgagctgctgtgttcctagaagctaaagtgtagctgatatttttattgattgtgttctttcttccttaccctttttgtgctctttcttcattgtttctaagtatgagctacttaaaaacacatacagagataatgagtgcatatctgtagaattattgggtcttgacccttgagactacttacatagcatatttgatttttcctacacttgcatttaacaatcggaatatgtcacagtaatattagaagatgcaagtttgatcgttttcctttgatgcccttatctcaatatcttaaacacctatggtttcaagttatatttcttctgattttaatgcacacaggaagttatatatagttgatgcccggccaagagcaaatgctttagcaaatggtgcaaagggaggtggctcagagtcagcatcaaactacccaagatctgaggtatattctgtatatattaactttttttatataccatacaatttctttacaattattttttctctgtttatctggatcctggaccaggttctctttttaggaatacaaaatatccacacaatgagagatagtctttttcgccttagggactatgttgatacccatggatcagtatcatcaaatggaacatcatcagctgtatctcttgttggagaccgggtaagcctatggtttgtcttgttgaactaccacttgcagtatacatttccttgatctaaggttagattatgcttgtgccaggccagttgtaggcttctccatacgtgggcttggtgccagccttttcttacgtatctgaatccattacctgcctccctagctgcaatttacattgtttagttaaatatgtactatgaagtagcttcttaagttagaacttgggaccctttatttctgaattagaaatatagtacacattatgaattttttgactaacggaagacatgtaaagttggtccggataagtcccaagtgttacttttatcatactgaaatgcctataagttcattaatgacaaaacagaagaagaggagattgacgatctttttttctcacagagaaatcgtggatcaacctggggtggagggaatctgaatagcatgacacaattttcttcaatgttaggggagtggctaaaccatatccagagtatcatggtcggtgcttcgtggattgctgcacaaattgtccaagaatcagcttctgttctcgtccattgcaggtttttttttcttcaccagcttctggagatgctctaattgaattggtttacttattagtaaagggagaatgcagagaatgttttttgcacctacattcttacctgggcacctgacatttagttgagtctgtaggctaggtttgtaattgctggatgataagtttaagctcaattgaatagagaaagactttgtctggtcacatctgggaggttgtaatttgaatttaactcaaaattcaaagtataaaataatttaaactagatgctttcccaaatcctgatccctaataagaactggtgtgatcttacaccctgattcatgtcttgtgcattcaagttatgatccgttgatttcatcttagtctgtatgatctctatagttttcttgctgtgtatccctacacattgctgatgcatatcaaattctctcactattttgtttttgcagtgatggttgggaccgcacaactcagttggttgcacttgcttgtttgttgcttgatccatattatagaacgttcaatgggttccaggtacagagattaacttttatgcaatgcactagtagtagcaaaatctttcagtttgattttagcattatatttgatgtttgatatccctttttgctaactggaaatgaaatgatttttttatatttatcgcacggttggtggccttcttaaattttgagatcgaacacactacttattttgcttctttgttgcatgtccatgtttttatatttgatattatgcactctgcacgaaagctatatgtacattcttctagttagtgccagatacgttttaagtgctggtttatttcaaacatgttacttcaataacacaattggaattttcacattttggatatgtaaccctctgcactacacttctttaggcccttgtggaaaaggattggctagcatttggccatccatttgcagagcgaatgggagttccaacgataactgataataatagtggatcacagtttgagctgctaagacaaccttctcttgggactttgagcaattcaccaaacagaggtgctttaggatcatcagtgtcaacgtctaatactacttctggtcaatcccagacatcaaacaactcttcacccatactgttacaggtaatctattctttcttgggcgccctgtgttaaaacagtacttttccagtcaaatttatttgatgtaactgagtctcagttctcccaatgtacctcaattcataaacaagcatcagcaactgccaacagtgagctaaatgaataatgttttttcttcttttattttctcatacacaatcaaccttttctgattctgtaattggtttccttattgcctgtatggcagatgttatactcttttgtgagggtaagcataagctaatactcttctggagttgtattgtacaaactgagcactgaagagtctgaagaccgctcagcatttaggattaagttgcacgccctcgcaaatcatgcatggcagatggtttccatttttatattgaaattattagttaataacaggcggtgctatagtgactactacattcaagtgactgcattctggctttttaataatcttccttatgaacaatgcgaaccattatccatttggcaattctcgcagtgaatatcttgtgattaagatatcaattgtttctgtatcactcaaaacttgtattaacccacctcagaacactcatatcttatttttcagtggctggattgtatttctcagttgttacgtttgtatccatctgcatttgagttctcatctgtaagtcgtctcctcttttgcagctgcattactctgctgaaactaggtctcttcatgaatttttataacctgaactgcttttcactgcagaaattccttgttgactttatggattgtgtgttgtcatgccgctttgggaacttcttgtgcaataggtatttaatctagatatctcattgcagctactttcatatgtatattttgtgattgagtgaatataagtgaacgagtagaggaagcaatcaaataaagacatgcggacatgctcatgttttcatctgtccaaaataatggaagttcttttctgactagagtgacatgcttaggtaaattgaaacattagttgcaggggtctgtttgagactgagtctctctttgagggtacatgattttcgttttttcatattaccattgtaagattctacggttttccatgatgtcatgactcacgaatggaaggctttatgctatattgccatctagtcaattaggggggaaaagaaagagcagtgaaatgtttctattcatcatctgtcatgatttatctgttgtaagtttgtactgtcttctaatgtgtctggttctcacattattttgaagtattagctggctacatgtgaacaatatagttaatagtttgccagtaataatgttagttgttacaccattcttaggctgtgtagtccactagatgtggtccgaaactcttttgactgtgtcttcccaaaacgggcttgtccagaaaattatagtttgttgttcatgtatgcacctgtctcttggtaataagcaatgtttgactcctttcttttatagttcttgatctatcttgtttggaaaatatcgtgcatatctgacttcaatttaaaatgcaagtgagcgagaaagggagcaatctggtgctgtaagctcttgccattgcatgtggacgtacttggctgatctccgagcttctggtggcagcttccataagcatcgtaatccattctatgatccattaaagcataatggtcccctagtgccacctgctgcagcacttgctcctaccctttggccccaattttatttgagatggacatgccccattgaatctcaaggtggtgatcttgaatctcaatggcatgccatgaataaaaagtacacagaagcaatgaaggtaactaagtatagatctttatgtatacctttaatcattttgttgctgtatgtcgagtcatcatagtattttttttgtttgatttgatcacacaatctttaggaagttgcatggagcaagactaaagacataaatttatggtttgagataggataaccatcataaaagggacactgggatgttttttttttaaaaaaaattgctttgtgtgtcagacatccatcctgatgtttatttcttgttttgttttctcttgtaatggacaggcaaaggacacagctgaatcaagggtaaaagatattaaaacgaagatggaatctatgcaattagaattacagagggagaagcgtgcaagtagttcagccttggccatggctcaacgtgctcaaagggagagcgttgccatcagaaaggcagtgcgatcgttgggctgtacggttaatttcggcacgaatgaaagccaggtggagaaaactgaggggctgacatattcatttcgaagagacacagattttgagtcccagcacgaaaaaagttccgacttctctgtatccatcaccgcgattgaggacagcttggtttcagaaacaccaagcaaccatatctgtgagtcactctgccctttccgcaccagggaaggatgtagatggcctgatgcagcgtgtgcacagcttggaagccagtttgttggtctaaaggcaaattttgatgccttcgaccggctatcggtacaagacagctattttggttcagaataggaaggagatcttcgactctccatgccaatccaaatgcacttggcagctgccaatacttttttttcacaagttggcgcctccaagtcctgcacagctgcactaatatcaagctatatgcgcggaaagcaaatcaaatgatacatgcttttaaccattttgccatgaagtacgccaagctcactttttttttctttgttgttgtttcttggaatacctctgtaatagtctctaactgggcattaggcgttcttcactagaggagttagcaactggttagtagctactgggactgaaaatcagtccttcgagctgtatatagaaggagatagattcatacagttaacagtataatgcaggatgtaaaagggataagggacatttctttctttcttttattttcattaaaattggtttagttacgttggg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0556700, RefSeq:Os08g0556700