Os09g0242300

From RiceWiki
Revision as of 20:55, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0242300

Description

Similar to WD-repeat protein

Version

NM_001069183.2 GI:297609089 GeneID:4346480

Length

4333 bp

Definition

Oryza sativa Japonica Group Os09g0242300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:3734103..3738435

Sequence Coding Region

3734103..3734255,3735372..3735650,3735735..3736004,3736093..3736683,3736772..3736873
,3737498..3737569,3738394..3738435

Expression

GEO Profiles:Os09g0242300

Genome Context

<gbrowseImage1> name=NC_008402:3734103..3738435 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:3734103..3738435 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcgccgggctccggctcggtcccaacggcgaagcgccgccggctcgtgccacggcctccgccggtgccgcttgaggtggccggcgcgagggggccgtacatgccgccgctatgtattaaatccaagaacccgtccgcgaaatgctacggtgacagattcatacctgataggtcagcaatggacatggatatggcatatttcctcctgacagaacctaagaaggagaaggaaaatactgacatgctatcaccagctgaagaagcttacaagaggcttcttgccgagaaactcctgaacaacagaagccggattcttgcattcaggaacaaaccaccagaacctgaaggaattgtgcaacagctattatatgaaactttgacttccagtcagacaaagcctgctaggaagtgtagacacataccccagtcttctgagaggacgttagatgcccctgggattgttgatgacttctatcttaacatattggactggggatgcaaaaatgtgatgtccattgcgcttgggaacaccttgtacctctggaattcagctgatggatctattatggaccttgtaacaattgacgaagatgatggtcccatcactagtgttagctggtcttgtgatgggcagtggattgccgttggcctcaactcttctgacattcagctgtgggacaccagctctaatcgcatgctgagaacacttcatggtgtacaccaatcaagggttggttcactggcctggaacaagaacatactgacaactggtggaatggatggaaacattgtaaacaatgatgtcaggatgagatcccatgttgttcatatatatcgagggcatgaggatgaggtatgtgggttgagatggtcaggaagtggccagcaattggcaagtggtggcaacgacaacctggtgcacatatgggatgtatcaatggcatcttctaatctatctctaggtcataaccggtggcttcatagatttggcgatcatttagctgcagtgaaggcccttgcatggtgtccgttccagagcaatttgcttgcatctggtggtggtggagatgatcggtgcatcaggttttggaatacacacactggtttatgtttgaattctgttgatactggatcacaggtgtgcggactactctggaataagaatgaaaaggagctgctaagtgctcacggatatgtacagaattcacttgcattgtggaaatacccttcaatggttaaattggcagaacttgaagaccacactgctcgtgttctttgcctggctcagagccctgatggatttacagtagcctctgttgcagcagatgagactctaaggttatggaaaatttttgaaacttctgaagatgccaaacccgtattcaagacagatctcatagcattagttgtaaccatggtcaccggtacgaaaggtggagaactggacatgccagagcttcatgaaatagctttcactggtgctgactttctcgaccatagatag</cdnaseq>

Protein Sequence

<aaseq>MEAPGSGSVPTAKRRRLVPRPPPVPLEVAGARGPYMPPLCIKSK NPSAKCYGDRFIPDRSAMDMDMAYFLLTEPKKEKENTDMLSPAEEAYKRLLAEKLLNN RSRILAFRNKPPEPEGIVQQLLYETLTSSQTKPARKCRHIPQSSERTLDAPGIVDDFY LNILDWGCKNVMSIALGNTLYLWNSADGSIMDLVTIDEDDGPITSVSWSCDGQWIAVG LNSSDIQLWDTSSNRMLRTLHGVHQSRVGSLAWNKNILTTGGMDGNIVNNDVRMRSHV VHIYRGHEDEVCGLRWSGSGQQLASGGNDNLVHIWDVSMASSNLSLGHNRWLHRFGDH LAAVKALAWCPFQSNLLASGGGGDDRCIRFWNTHTGLCLNSVDTGSQVCGLLWNKNEK ELLSAHGYVQNSLALWKYPSMVKLAELEDHTARVLCLAQSPDGFTVASVAADETLRLW KIFETSEDAKPVFKTDLIALVVTMVTGTKGGELDMPELHEIAFTGADFLDHR</aaseq>

Gene Sequence

<dnaseqindica>1..153#1270..1548#1633..1902#1991..2581#2670..2771#3396..3467#4292..4333#atggaggcgccgggctccggctcggtcccaacggcgaagcgccgccggctcgtgccacggcctccgccggtgccgcttgaggtggccggcgcgagggggccgtacatgccgccgctatgtattaaatccaagaacccgtccgcgaaatgctacgtgagttgctgcaaatgactccccttttcttagcttcttcccccaagttgaattcttggatggatttccgtccgctcgttcgggcctgatggaatgtgtggaaggaatccgttgatgccgcaattatggatgttttaggacttaggaggttctcgatgtcgttcttgataatccgagagatagatttgctctgactcaattttagatgattcgctgattcttgatgtctgcagagccaattatattggtctttgttggcttgttttagatgttgaaattttgtagaggaatctgtgatccgtgccccaatcctggaatgaggaaatgttaatgatgtgggaatataattgatcatgcatgattctttttagagtgcaaaagaaattcgaaatcttggtgattttgtcctatactcaatctgttttttggccaaaaattttgtcaaaagaaaatagtcagtgtaacttgttcagaaccaagttcattcgtcagttgcatcaatattcatcatcaatgttcgaagaaacctagcacaatagtcgagtggaagacaatgccaagtttgccaacattagttacataatccatgccaagcataaatcacagaatctagataacctttagtaatcgatattattcctggacctcaataatatgtttttgaagtaatatactgaatacgctgttcttttgttaaacatgacagtgagaattgctcgtaggtcccaatcctgattttcctttgtattcctcaattttggggttgtcctttcacataaaaatcggtatgaatcagtccagtgttctgttaagcttttttgtggacaaatcgattgtgtgcaataaaaaaacaggtacaaactgttcttgatgttttgacaccaacagtatttctcttcagtgaagtactgaaattttcagtcatgtaggaattgttttcttcttgtgtcacaaattcaatcttgtctcttcaatatttgaactttcaacatagtaatcattgaagtatagttgatagtgcaatggtgcttagacttgtgactagtgttattattttgtattagatcttcaaagtggtaagatgactaatttgtatttctatatttatggtgacagggtgacagattcatacctgataggtcagcaatggacatggatatggcatatttcctcctgacagaacctaagaaggagaaggaaaatactgacatgctatcaccagctgaagaagcttacaagaggcttcttgccgagaaactcctgaacaacagaagccggattcttgcattcaggaacaaaccaccagaacctgaaggaattgtgcaacagctattatatgaaactttgacttccagtcagacaaagcctgctaggaagtgtagacacataccccaggtatgcaaattaatttgttgcttcaaacatatttttaggattttttttaatatacatcattcttagcttagcttaaattttcagtcttctgagaggacgttagatgcccctgggattgttgatgacttctatcttaacatattggactggggatgcaaaaatgtgatgtccattgcgcttgggaacaccttgtacctctggaattcagctgatggatctattatggaccttgtaacaattgacgaagatgatggtcccatcactagtgttagctggtcttgtgatgggcagtggattgccgttggcctcaactcttctgacattcagctgtgggacaccagctctaatcgcatggtcagttatctagagttctagacacttgctctgtattgtaagcagattaacttgtactgatagatatgcatatgtataaatgtggcagctgagaacacttcatggtgtacaccaatcaagggttggttcactggcctggaacaagaacatactgacaactggtggaatggatggaaacattgtaaacaatgatgtcaggatgagatcccatgttgttcatatatatcgagggcatgaggatgaggtatgtgggttgagatggtcaggaagtggccagcaattggcaagtggtggcaacgacaacctggtgcacatatgggatgtatcaatggcatcttctaatctatctctaggtcataaccggtggcttcatagatttggcgatcatttagctgcagtgaaggcccttgcatggtgtccgttccagagcaatttgcttgcatctggtggtggtggagatgatcggtgcatcaggttttggaatacacacactggtttatgtttgaattctgttgatactggatcacaggtgtgcggactactctggaataagaatgaaaaggagctgctaagtgctcacggatatgtacagaattcacttgcattgtggaaatacccttcaatggttaaattggcagaacttgaagaccacactgctcgtgttctttgcctggctcaggtatatctctttctattgtggtatagtaatgatgagtaattgcttatgatttgtttgctgatttcgtttttatgctatatggttgcagagccctgatggatttacagtagcctctgttgcagcagatgagactctaaggttatggaaaatttttgaaacttctgaagatgccaaacccgtattcaagacagtaaacactggaatgtttaacagtttcagccatatcagatgaggtatgctcaattgtactccgcatcgactgtatgttgtgaatcgctgaatcctaaaagggtatcgaaaatatgtatgttctgattggactttcgaaaataagtttacaattgatgaatattctttattagttcttttcattcgttaatcacaaaagcaagtatgctaattgtttaaggattttgtgccaggtgaaaaatgccattttagtgtagatattgacagcaaatcctatctgatttgttttcagcatttcttttcacaacaataaccgtgatgttttccatactttcaaaagattgttataataaaacatttacattgttttccacatacatactgtctgttttatctgtgacattcttttgtcgtattttgttgagagcaataagtcttgtttgtatattggtttcttcgtaagaaaattgtactagtaagttttaccagagtccacaaggatgttttatctgcaattactgttgcactataatgaatttataatcaattattgatacagtttgtccttgtcttccaggataatgtgagagttggaccgtggggaactgactgttcatattttcaggatctcatagcattagttgtaaccatggtcaccggtacgaaaggtggagaactggacatgccagagcttcatgtgtatatatacgtttcatttttttttgcatctggatgataaatgttttctggccggcctactttcttttctgtgctaggctgacaagaaactgtaattggccatttcttttatttgctaggctcacagaaactgtaatcaaaagcaaccgttcatttcatgttggtgtattggttcttgatgccatcatgctactgatttgtttggcaatagatactgccttcgttccataaagaacgagcatagtactccctccgtcatattttaagcgcaaccatgaatctctgtgtccaattttaaccgtatgttttatttaattttttaaaaaaaattaaaacataagttatgcacaaggtattatttatattttatcatctaataacaataaaaatactaatcataaaaaaaatttaaataaaacgggcgatcaaagttggacacgtaaactcatcgctgcgcttaaaatgggacgaaggtagtacaagatatgacacattgatacatcgtaatactatatatgtatgtatgttcagatttatggactaagggagtatgtaataatatctggatgctagtatcttttcctatgtgcagtagagatgttgctatgtttatttctgagcgtgattgtattgcaccagacacatttgcgcgagaatgtttcgtttagatattaccctatgtttgagagtagttttgacatttttttacttgttcatttacaaagaaaaaattcggttccagtgtgctgttactgttgttcacacatttgatcgttagttaatttgagaccacgtacaccgtgagatactgaggttgggcaggaaatagctttcactggtgctgactttctcgaccatagatag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0242300, RefSeq:Os09g0242300