Os09g0255000

From RiceWiki
Revision as of 20:55, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0255000

Description

Similar to Cell wall invertase (EC 3.2.1.26)

Version

NM_001069226.1 GI:115478191 GeneID:4346527

Length

5522 bp

Definition

Oryza sativa Japonica Group Os09g0255000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:4731109..4736630

Sequence Coding Region

4731233..4731392,4731552..4731560,4734666..4735944,4736013..4736106,4736197..4736445

Expression

GEO Profiles:Os09g0255000

Genome Context

<gbrowseImage1> name=NC_008402:4731109..4736630 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:4731109..4736630 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgagattaggccttgccgtctgcgccgcctccttccacctcttccttcttcttgcgtcgacctcctcgctccggcgagctcccacggaggcggacacggccaaccatgccagaagaactgcctatcacttccagcctgcaaagaactggcagaatgatccgaatgggcctatgtaccataacggtatgtaccatttgttctaccagtacaacccgcatagcgcgctctgggacatcggcaacctctcctggggccactccgtctccggcgacctcctcaactgggccgctctcgacaccgcgctcgaccccacctcgcctttcgacgccaatggctgctggtcgggctccgccaccatcctccccggcgccctcccggccatcctctacaccggcatcgacgccagcaaggagcaggtccagaacgtcgccttcgccaagaacccctccgatccgctcctccgcgagtgggagaagcccgcgtacaatccggtcatcgcgctcccggccgatgtccccggcgacaagttccgtgacccctcgacggcatggctcggccgtgacggcctgtggcggatcgccgtctccgccgaggtggacggcgtcgcgtccacgctcgtctacaggagcaaggacttcgtccggtgggagcggaacgccgcgccgctgcacgcgtcgcgcgccgcgggcatggtggagtgcccggacctgttccccgtagcggagcgcggcgaggatggcctcgacacgtcggcgaacggcgccggcggcgtgcgccacgtcctgaagctgagcgtgatggacacgctccaggactactacatggtcggcacgtacgacgacgcggcagacgccttctcgccggcggagcctgagcgcggcgacgactgccggagctggcggcggctggactacgggcacgtgtacgcgtccaagtcgttcttcgacgtgcgcaagaaccggcgcgttctgtgggcgtgggcgaacgagtccgacagccaggccgacgacgtcgcccgcggctggtccggcgtgcagacattcccgaggaagatgtggctagccaaggacggcaagcagctgctgcagtggccgatcgaggagatcaagacgctgaggaggaagcgcgccggtctctggcaaggcaccaggctaggcgccggcgcggtgcaggagatcgtcggcgtggcgagctcgcaggcggacgtggaggtggtgttcaagattccgagcctggaggaggccgagagggtggacgaccccaaccggctgctggatccccagaagctgtgcggtgagaagggcgccgccgtgcggggcggcgtcggcccgttcgggctcctcgtaatggcctccggcgacctgcacgagcacaccgccgtcttcttcagggtgttcaggcaccatgacaagtacaagcttcttatgtgcaccgacttgacaaagtcgtcgacaagagcaggggtgtacaagccggcttacggcggattcgtggacatggacatcgacgatcacaaaaccatatcgctgagaacgttgattgaccattcggtggtggagagcttcggcggcggcgggcgggcgtgcatcacggcgcgggtttacccggagcacgtggcgacgagcagcagccatttgtacgtgttcaacaacgggagcgacgccgttaaggtggccaagctggaggcgtgggacctggcgacggcgaccgtcaacgttgttgttggagaccaccacggccttgttgcgccggcgttggagttggagccgacacgcacgacgcagtga</cdnaseq>

Protein Sequence

<aaseq>MARLGLAVCAASFHLFLLLASTSSLRRAPTEADTANHARRTAYH FQPAKNWQNDPNGPMYHNGMYHLFYQYNPHSALWDIGNLSWGHSVSGDLLNWAALDTA LDPTSPFDANGCWSGSATILPGALPAILYTGIDASKEQVQNVAFAKNPSDPLLREWEK PAYNPVIALPADVPGDKFRDPSTAWLGRDGLWRIAVSAEVDGVASTLVYRSKDFVRWE RNAAPLHASRAAGMVECPDLFPVAERGEDGLDTSANGAGGVRHVLKLSVMDTLQDYYM VGTYDDAADAFSPAEPERGDDCRSWRRLDYGHVYASKSFFDVRKNRRVLWAWANESDS QADDVARGWSGVQTFPRKMWLAKDGKQLLQWPIEEIKTLRRKRAGLWQGTRLGAGAVQ EIVGVASSQADVEVVFKIPSLEEAERVDDPNRLLDPQKLCGEKGAAVRGGVGPFGLLV MASGDLHEHTAVFFRVFRHHDKYKLLMCTDLTKSSTRAGVYKPAYGGFVDMDIDDHKT ISLRTLIDHSVVESFGGGGRACITARVYPEHVATSSSHLYVFNNGSDAVKVAKLEAWD LATATVNVVVGDHHGLVAPALELEPTRTTQ</aaseq>

Gene Sequence

<dnaseqindica>125..284#444..452#3558..4836#4905..4998#5089..5337#tcagactcatgactcagggcaccaaccaaacaggcgttttcttcagagtttcagagcagaagcagagacaccaacaagaaggcgatcagctcgttcttcttctccctctcctccagcggcggccatggcgagattaggccttgccgtctgcgccgcctccttccacctcttccttcttcttgcgtcgacctcctcgctccggcgagctcccacggaggcggacacggccaaccatgccagaagaactgcctatcacttccagcctgcaaagaactggcagaatggtatcatctcttctccccgagtcgttcttgtgattaatcgctttgatccagttccggatttagccaaactaatcgcttttcctgtctgatcggggccgaattgctgctgattcggatggattggatttatgatggccgatgatgatgccgatcgagcagatccgaatggtacgatctcttcctgttcctctttcttcttatctttcctctgattactggaggttttgcataattgttctctaatagaattgcaaaaactatgtcctttcctggttcccttatatgcctcgattagccgggcataagcatcgatttggacatcagaataggttaagcttatccatttggagatgtgtggtcagcgatgctagggtggattgacaagtgttcctcaaccatttggccataactgaaaaagaaatatcattctgttcaaactcagtagattttagtgacaccatgtccataacactgcagttttctctaatttgtctcgcccgtagtcacattgtgcattttgatttccaattcatgatttgttatctcctttcaataaattataaaaggcagcatatgccacaggattgcttgctcactgctgctagcctgctactacaattttacacagtatattttcttagtcggaaattttatgtaccaaaatttcagtaatttcaaccctccaaaagaacagttccactcaaatattttggtatatttcatatttagttcaatgtcagcaatatttcaattttttcacctgatattagtaattttaccccctccgattttttttttcaatacggctgaagtgtaggcctgtctatagtatacatgttaccttaaaaatggataagtccagttgatcgttatgaactattcactttgtttaccgtcacaaccctatattttagaactaggtgattggaacccttcaattttcaataccattcgctttatcccctcctctggtccaacataggatggttttcaccaacatagcatcaacatgacagtccaaccaaccaaaattaattttaaaataggtggaacccgtatgtcacttacagttcatctatcttcttcctccacctttcctcttcccctctgtaccttctctctcagcgcatccagctcgtatgcctcctttgcacccgcacctctttaccaaagtcacacatgcatggagcatgagatgattcacggtagtcgtgtatgaggcgtggatctcaccgaagccatgagcttggactcggtgatgtctatgcatgagattcggaattgtggcatagctcgaagagaggggatttggtgggagagaggatgagagaagaagggaaagccaccaccgccacaactccttgactccctgagccgccgccactgcctttcacaagctccagagctggacctcttcttgcaaagggtgtcgatggattctatgtgtgatagacatggcactcttcttctcgtggaactcttgctcctcagcttggtcctcgtagaaccagttcatttctagcaattgagcttttaggatcaagatgtcgacttggggtggggggttgagtaggtgatattaaaaataaaatagttgacacctaatcaaaactaagctaaggttgctagttttggtgaaggatgaaactaactaagcaactagattaagttttgcaattctaggctgataagggttcaagtagtctgtatgagagtaaattgtatgtatgtaaatgataagtaaatgagataagagacaaggaatttttcacccaagctttggaaactcactggtttcctaatctccactaaggcgagcccaacttcaccgctcaaaccacgaatcctctaaaccactacgtcaaaggatgggcaaggtgggagtcggtcccgaagtagctattggaggcaaaaacccaacttaccacaacctaatggttatatcgccaaggggaggtcggtcagactagcctcgattggaccaccggtgtgactgccatagccgtccgattaggctgtcggcggctccaataagaccaagctgccaccggttagactagtctcggctttagcagttttggatcgccaagagagggccaccctaccggctccatgggcgctcagtctgaccgagttcgacccgatcaaattggcatgcacaccgcagccagaccagtcggagccctcggtaaaactggcgcatagggcgtggtaagaccagcatgtcctctttggtcagactggccatggttagacaatagaatatgatttcaaccaaaccaagtaccctcatgcatctgaatgaaaagttagatttatcacttcatcccaatgctttgtaccatcatttttattccatggtaataatccataacatgaacataatgtggtccgtactaaaattatcaatgcacacaatgaggtccatactaaaattatctcactccaataaaatagttaatccataattaacatttatcattaattaccaaaatcaacatggtggtaattgcacgatttgaaaaattagagttattggatactcacatttagaattagaccctttttttaaggaattgaataatggattaatatgacatgctccctgagctagcgaacagtacgtgtttaaaaaaatctttctgtatatgaatttaaaaatatattttaaatttattttccaactttataataatctctccatacaaaaacctaagacatattatttttttatcaagttcaaagaaaaattaaatcatcttgtatgtaacaaattaagtatacatgtaactgaatgactgaccgggttccgcttaacaattctaacactacaaaatgaacctctagatatatgaagactacaaatacacccatctcatttagagaaaaagaaaataaaatatgtttaaaacttttggataaagggagtagttagttcatatattgtactttgaataatgaacaaaaaaaacaggcccttagccgataaactacttatggtacttatcccgaactaatatggtactacttcggtcccgctataagtgtaattgtagattcaaattttatcctaaaataggtgcaattctaccataatacctaccacatcaatcatatctcatttaagtttctctctattttaccatcaagtacccactcactccctaccatctccaatttaatggatgtatttgggtaattttctctccgtcttattttcacctctcattgcatgttaaaaatgtacttacagttattgattcacacatgcagggcctatgtaccataacggtatgtaccatttgttctaccagtacaacccgcatagcgcgctctgggacatcggcaacctctcctggggccactccgtctccggcgacctcctcaactgggccgctctcgacaccgcgctcgaccccacctcgcctttcgacgccaatggctgctggtcgggctccgccaccatcctccccggcgccctcccggccatcctctacaccggcatcgacgccagcaaggagcaggtccagaacgtcgccttcgccaagaacccctccgatccgctcctccgcgagtgggagaagcccgcgtacaatccggtcatcgcgctcccggccgatgtccccggcgacaagttccgtgacccctcgacggcatggctcggccgtgacggcctgtggcggatcgccgtctccgccgaggtggacggcgtcgcgtccacgctcgtctacaggagcaaggacttcgtccggtgggagcggaacgccgcgccgctgcacgcgtcgcgcgccgcgggcatggtggagtgcccggacctgttccccgtagcggagcgcggcgaggatggcctcgacacgtcggcgaacggcgccggcggcgtgcgccacgtcctgaagctgagcgtgatggacacgctccaggactactacatggtcggcacgtacgacgacgcggcagacgccttctcgccggcggagcctgagcgcggcgacgactgccggagctggcggcggctggactacgggcacgtgtacgcgtccaagtcgttcttcgacgtgcgcaagaaccggcgcgttctgtgggcgtgggcgaacgagtccgacagccaggccgacgacgtcgcccgcggctggtccggcgtgcagacattcccgaggaagatgtggctagccaaggacggcaagcagctgctgcagtggccgatcgaggagatcaagacgctgaggaggaagcgcgccggtctctggcaaggcaccaggctaggcgccggcgcggtgcaggagatcgtcggcgtggcgagctcgcaggcggacgtggaggtggtgttcaagattccgagcctggaggaggccgagagggtggacgaccccaaccggctgctggatccccagaagctgtgcggtgagaagggcgccgccgtgcggggcggcgtcggcccgttcgggctcctcgtaatggcctccggcgacctgcacgagcacaccgccgtcttcttcagggtgttcaggcaccatgacaagtacaagcttcttatgtgcaccgacttgacaaagtaagaaggctaataattttccattgttcatctctactagtattagaactgacaacatgtaatttcaggtcgtcgacaagagcaggggtgtacaagccggcttacggcggattcgtggacatggacatcgacgatcacaaaaccatatcgctgagaacgttggtgagttcttcgcaaacattcagagccacagacttacagcttcaattgattcatcgaaccttggtgtttttctttctttttattggacagattgaccattcggtggtggagagcttcggcggcggcgggcgggcgtgcatcacggcgcgggtttacccggagcacgtggcgacgagcagcagccatttgtacgtgttcaacaacgggagcgacgccgttaaggtggccaagctggaggcgtgggacctggcgacggcgaccgtcaacgttgttgttggagaccaccacggccttgttgcgccggcgttggagttggagccgacacgcacgacgcagtgatctgaggcctgaagcggctggccggcactggcacagttggttcgatagtttgatggcatcgtgcagccgattggttgtgtggtgatttgttcgattgttgtgaacagggtgtatgatctgtgacagaaagaagagcacaaaagaaatcattcgatagtatacgtcacgtgctttatatgttttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0255000, RefSeq:Os09g0255000