Os09g0374900

From RiceWiki
Revision as of 20:58, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0374900

Description

Strictosidine synthase family protein

Version

NM_001069568.1 GI:115478878 GeneID:4346905

Length

3227 bp

Definition

Oryza sativa Japonica Group Os09g0374900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:13141332..13144558

Sequence Coding Region

13141332..13141630,13141715..13141990,13144045..13144558

Expression

GEO Profiles:Os09g0374900

Genome Context

<gbrowseImage1> name=NC_008402:13141332..13144558 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:13141332..13144558 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggccgtgcttgtctccccgggcggcagtgctcattgcgctcctcctcttgccggcggccatggcggcggcggcggcggcggccggcggccacggcgaggagatgaagtccatctacgccgggcccaaggtcgtgcccgtgcggctgggccggccggcgttcggcccggagagcctcgccttcgaccaccgcggcggcggcccctacaccggcgtctccaacggccgcgtcctccggtggcgcgccgaccgccgccgccccggctggaccgagttcgcccacaactacaagcacgcgacggtggcggagtgcgcagcgaggaagaaggcggcggcggcggcggagagcgtgtgcgggcggccgctgggggtgcagttcgaccggaggacgggcgagatgtacatcgcggacgcgtacctggggctgatgagggtggggcggcgcggcgggatggcggaggtggtggcggcggaggccggcggcgtggcgctcaacttcgcgaacggggtggacgtcgaccaagccaccggcgacgtctacttcaccgatagcagcaccacgtacaagcggagcgactacctgctggtggtgctctccggcgacgcgacggggcggctgctccggtacgagccgcggacgggcaacgtcaccgtgctcgagtccggcctcgccttccccaacggcgtcgccgtcagcgccgacggcacccacctcgtcgtcgccgagacggcctcctgccggctgctccgccactggctccgcggcagcaacgccggcgccaccgaggttctcgccgacctccccggctacccggacaacgtgcgccacgccgccgccgacggcggccgcggcgcgtcgtactgggtcgcgctcaaccgcgacaaggcgtggaccgtgaacggcacgacgccggcgtccgtggccgccgtcagggtggtcgtcgacgacggcggcagcaaggtggacgtggcgctgcgcgggttcggcggcgccacggtgagcgaggtggtggagcggaacgggtcgctgtggttcggctccgtcgacacgccgtacgtcggcttgctcaagctcacctcgctctag</cdnaseq>

Protein Sequence

<aaseq>MWPCLSPRAAVLIALLLLPAAMAAAAAAAGGHGEEMKSIYAGPK VVPVRLGRPAFGPESLAFDHRGGGPYTGVSNGRVLRWRADRRRPGWTEFAHNYKHATV AECAARKKAAAAAESVCGRPLGVQFDRRTGEMYIADAYLGLMRVGRRGGMAEVVAAEA GGVALNFANGVDVDQATGDVYFTDSSTTYKRSDYLLVVLSGDATGRLLRYEPRTGNVT VLESGLAFPNGVAVSADGTHLVVAETASCRLLRHWLRGSNAGATEVLADLPGYPDNVR HAAADGGRGASYWVALNRDKAWTVNGTTPASVAAVRVVVDDGGSKVDVALRGFGGATV SEVVERNGSLWFGSVDTPYVGLLKLTSL</aaseq>

Gene Sequence

<dnaseqindica>1..299#384..659#2714..3227#atgtggccgtgcttgtctccccgggcggcagtgctcattgcgctcctcctcttgccggcggccatggcggcggcggcggcggcggccggcggccacggcgaggagatgaagtccatctacgccgggcccaaggtcgtgcccgtgcggctgggccggccggcgttcggcccggagagcctcgccttcgaccaccgcggcggcggcccctacaccggcgtctccaacggccgcgtcctccggtggcgcgccgaccgccgccgccccggctggaccgagttcgcccacaactacaagcacgcgtaagctctcaatcacagctaatgacatggcgcatgagactcaccggcggcgtacgggcggcggcgcgtggtgttgatttgcaggacggtggcggagtgcgcagcgaggaagaaggcggcggcggcggcggagagcgtgtgcgggcggccgctgggggtgcagttcgaccggaggacgggcgagatgtacatcgcggacgcgtacctggggctgatgagggtggggcggcgcggcgggatggcggaggtggtggcggcggaggccggcggcgtggcgctcaacttcgcgaacggggtggacgtcgaccaagccaccggcgacgtctacttcaccgatagcagcaccacgtacaagcggaggtacgtacgtatgggctacctattgggctacatggtactccctccgtattttaatatatgacattgttcacagtttgatcaacatttgaccatttattttatttaaaaatatatgttattattatttattttagtgcaatttaatttatcatcaaatgttctttaaatatgacattaatatttttatatttacacaaaaatttaaataagataaatcttcaaaagttggtaaaaaaaagtcaactgcgtcatgcattaaaatatggaatgggtacttttttttcattgcaaaatatagtaatataatattggttaaatggaacatgctctaataccactaatttggtcaggtggtctgtctgggttcttatattttaaaacagatggagtatgcaagcacaactgcttcgaaacaaagtgttaaaaaaatatgatttggtttgcgagttatagttgcatttaatggattttatttgatcctttccccgactacgtagctgtatgtcacacaatagtttaagggtaatttagacttatatttcttaaataaaagtgactggggaagtacctcattgtcttcaaatgccactttagcactaaattgtattgtaatgcataatttagctgtaatatctactacaattacgaaaattgtaatataccgtacttttttcacgcactactgtaaaaataattttccaagacacactcaggttccatttctaccggcatattggtaggggcgggctattttttaaaatgcattttacccatatgtaaaaatactcccatcgtctcaaaatataagggatttgtgtcatatcctctaaaatctcttatattttgagatggagggagtagttaatttggtagtaccatgtcaaatggatttacgggttcaagaaaatgtctgacaacagtgaaccatgtacgtatatcaatattgatttcactgtctatttttcctggggcaagttagcatatatagtacagtattgcaggggacaacggacatattaacattattatggtgaattactacagtagataagaatgtcattggagttatgaacatttattaattagctggatcgagaaacaaatgatcatctgcatagtagttgtactagctcaggttttggatctcaattaaaacaggggaattcttgtgataagtaagtggagtactatttccgtaggtttaattagagcaagtttaatagtgtagctaattgttggtttcaaaacaactatagctaatctaatagtccactcatataatagttaactataaaaatatactacaacattaatactcggtcccacctctcatacacacataacgttttggagtccgtgttgcagccggctacaaatctatagcccgctttcttctctctcttctcttttttttctcgatatgtagttatagctgacttataacttgctattgtacctgctcttaaggcactaagttatatttacgacatcacattcagaaaacttcttgcactacatattgattacataaatttacattttaattgcactataaataacaggaattacattgtaactaaactactagtaaacactatttagaattagatttatgataaaagcaaatgactagaaagatatgagagatttttttaaaataatgggaggagaattttgttatgtgaaattgctagaaaacttgtaaatttgtttttacttccaaaactttcagatttgtggccatcaaatcaccttgagatttgagcataaagagaaaattgctagaaataaattttcgcacgggtcatgccttaagatttgtgcatgaagttatccgatgctaaccaactaaattatataagttttttatatagctacatttctattacaatataattacatttcaattatattatagttgcatttgaaaaagatactaggatatatgaaaaatagaagcatactttctagtgcaagttgggtaattaaggaggtttaattaaccatcattgtggtaatatagtctgtaaaactaattaatccgtgcggtgcagcgactacctgctggtggtgctctccggcgacgcgacggggcggctgctccggtacgagccgcggacgggcaacgtcaccgtgctcgagtccggcctcgccttccccaacggcgtcgccgtcagcgccgacggcacccacctcgtcgtcgccgagacggcctcctgccggctgctccgccactggctccgcggcagcaacgccggcgccaccgaggttctcgccgacctccccggctacccggacaacgtgcgccacgccgccgccgacggcggccgcggcgcgtcgtactgggtcgcgctcaaccgcgacaaggcgtggaccgtgaacggcacgacgccggcgtccgtggccgccgtcagggtggtcgtcgacgacggcggcagcaaggtggacgtggcgctgcgcgggttcggcggcgccacggtgagcgaggtggtggagcggaacgggtcgctgtggttcggctccgtcgacacgccgtacgtcggcttgctcaagctcacctcgctctag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0374900, RefSeq:Os09g0374900