Os09g0443000

From RiceWiki
Revision as of 21:00, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os09g0443000

Description

Cyclin-like F-box domain containing protein

Version

NM_001069830.2 GI:297609543 GeneID:4347186

Length

4178 bp

Definition

Oryza sativa Japonica Group Os09g0443000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:17136357..17140534

Sequence Coding Region

17136357..17136587,17136592..17136770,17138402..17138678,17138772..17138933,17139670..17140288
,17140338..17140534

Expression

GEO Profiles:Os09g0443000

Genome Context

<gbrowseImage1> name=NC_008402:17136357..17140534 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:17136357..17140534 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccgccgccgccgccgcaccgtcacaagaagtgtcggacggcggaggctgctgttcccgggggggaggaggaggaggaggcgaaggacgcgctgatctccctgccgccggacgtcctcgacggcgtcctgacccggctcggcctccgcgacgccgtccgcacctccgcgctctcccgcgcctggcgccggcggagggcgcggcgctggccgccgtcgacggcgtcctcctccgctgcctgccccggccgcgtccggagcttcagcgcatacgtcgacaagctcaccacccgccgcgcccatgactggatcctcgtcctcgcgcgccgcggcgtcgagtccctcgacctcgcgtcgccgatccacaaccacctcgccgtccactcctccgtcttctcctgcgaccgcctcgcctacctcaacctcttcgcctgcgacatcccgccgctcccgccgggtttcgccggattccccaacctgaggagcctaaccctcgaccacgtgtggctgcgagcgggcggggagtaccaactggaggagatcatcgagaattccccattgcttgagatgctagtgttatctggaatcttcatcgatggagacgatatcataaattgggtgattcgagcgcccaatctccagcatctaacgatttgttcgccgaacgattatggatggaaccttttggatttgccacgcctgcgttctgccgtcatcgatttgtgggattatcttggtggccgtgatttcgccgagtttctcggcaagcttcttcatgttaggaagcttcacctctttgtgtcctatcaaccgtcaaatggagctaagatactagagacacttccatgcacctttgacagcttgaagagcttgaagagcttgaagttatacatggacttctgtgaactgcccgcgattttaacgattttttgcttactaaggaatgctccgaatctcgaaaaactcaaaataatgatcactgataacgagcagaaagttgaggcaaatggggtgttccaaaatgcagagtggactggtggcatgtgcgccaaccttcaaattgtacagataacgagaattagttggcttccaaatgaaatgtcttttatagagctgattctctctaaagcaagtcttcttcgcacaatatctgttactcatggtgataaatgcctaatgtctaatgaggatgcgctcagtgagttactaaaatacaaaagagcttcaccccaagctcagatcctgtttaaagggtacaatagtaaagtactaagacagattaggggtaaatttgacatcacgacaacgtcggttacgtcgttgtgttcgatcgtcggtggcggcggcggtggagatcatcttgagggcggagccgccggtggtgaaggccttcttgcggacggccttgtaccccggccacgtgacggcgcggcggcgctccggccgggcgacacggcgtccgtcaacggcgccaccttgacgtccggcgggcgggccgaggaagtatccgagcgatatcctgtcacggtcgcggttgacgacggcgcggtggtatacgctgtggaagcggccgttggtgagtatgcatgtggaagagaggtcgccgacgttgaggacgaagttgcccggaacgatcgccggcaccgccacccaccggtctag</cdnaseq>

Protein Sequence

<aaseq>MEPPPPPHRHKKCRTAEAAVPGGEEEEEAKDALISLPPDVLDGV LTRLGLRDAVRTSALSRAWRRRRARRWPPSTASSSAACPGRVRSFSAYVDKLTTRRAH DWILVLARRGVESLDLASPIHNHLAVHSSVFSCDRLAYLNLFACDIPPLPPGFAGFPN LRSLTLDHVWLRAGGEYQLEEIIENSPLLEMLVLSGIFIDGDDIINWVIRAPNLQHLT ICSPNDYGWNLLDLPRLRSAVIDLWDYLGGRDFAEFLGKLLHVRKLHLFVSYQPSNGA KILETLPCTFDSLKSLKSLKLYMDFCELPAILTIFCLLRNAPNLEKLKIMITDNEQKV EANGVFQNAEWTGGMCANLQIVQITRISWLPNEMSFIELILSKASLLRTISVTHGDKC LMSNEDALSELLKYKRASPQAQILFKGYNSKVLRQIRGKFDITTTSVTSLCSIVGGGG GGDHLEGGAAGGEGLLADGLVPRPRDGAAALRPGDTASVNGATLTSGGRAEEVSERYP VTVAVDDGAVVYAVEAAVGEYACGREVADVEDEVARNDRRHRHPPV</aaseq>

Gene Sequence

<dnaseqindica>3948..4178#3765..3943#1857..2133#1602..1763#247..865#1..197#atggagccgccgccgccgccgcaccgtcacaagaagtgtcggacggcggaggctgctgttcccgggggggaggaggaggaggaggcgaaggacgcgctgatctccctgccgccggacgtcctcgacggcgtcctgacccggctcggcctccgcgacgccgtccgcacctccgcgctctcccgcgcctggcgccggcggtgggagtccctcccgtccctcgacatctctttccccttcccgcaccaggagggcgcggcgctggccgccgtcgacggcgtcctcctccgctgcctgccccggccgcgtccggagcttcagcgcatacgtcgacaagctcaccacccgccgcgcccatgactggatcctcgtcctcgcgcgccgcggcgtcgagtccctcgacctcgcgtcgccgatccacaaccacctcgccgtccactcctccgtcttctcctgcgaccgcctcgcctacctcaacctcttcgcctgcgacatcccgccgctcccgccgggtttcgccggattccccaacctgaggagcctaaccctcgaccacgtgtggctgcgagcgggcggggagtaccaactggaggagatcatcgagaattccccattgcttgagatgctagtgttatctggaatcttcatcgatggagacgatatcataaattgggtgattcgagcgcccaatctccagcatctaacgatttgttcgccgaacgattatggatggaaccttttggatttgccacgcctgcgttctgccgtcatcgatttgtgggattatcttggtggccgtgatttcgccgagtttctcggcaagcttcttcatgttaggaagcttcacctctttgtgtcctatcaaccggtacattctgatgcctccaaatgtttcttgtttttctcttgccagttgataattagtttcctctaaaaaaaataggtgatcattttactttaaaatggttgatgtttaggttgaatcaaaatacttgctcgctgattaaactgcagagttgaatatgtgaaattatatgatttatcgacaacaattatatgatcatgactgttgttggttgcataacctcttgtggataggatattaggatcatgtttgctgggtgacataaacgtagcaaactttctgtgctgtctcctaatctgtaaatattactgtcatacaaagaattgtagatattactgtcatacaaagaattgtagatattactgtcatacaagggattatgtgattgtgcacatattcttatggtgaatatatattggcatccgtatgctttcagtaactcatttgtcttccaacttggtagtccgatggccttttacctttctgatttgctacattagactccttactttcgctctagaaaaaaggtttatcccctagttggatatgtgggctgtgggcctgtgttctccttgacaaattaacaatgtggaacatttccttcaataaagggatatgtgtttttggtcttgtttggacagaagggaaaaaaaacataatatgtcctttgattatttctatccatccagtttcaacttttaagttctgatggagtacctgttttcttcatatctttcagtcaaatggagctaagatactagagacacttccatgcacctttgacagcttgaagagcttgaagagcttgaagttatacatggacttctgtgaactgcccgcgattttaacgattttttgcttactaaggaatgctccgaatctcgaaaaactcaaaataatggtaaggttgaatgttgcctcgcaagttgaatatatgtgcactgtttgaaggttatctctctctccttacaattttttatttctgtttgtgaagatcactgataacgagcagaaagttgaggcaaatggggtgttccaaaatgcagagtggactggtggcatgtgcgccaaccttcaaattgtacagataacgagaattagttggcttccaaatgaaatgtcttttatagagctgattctctctaaagcaagtcttcttcgcacaatatctgttactcatggtgataaatgcctaatgtctaatgaggatgcgctcagtgagttactaaaatacaaaagagcttcaccccaagctcagatcctgtttaaaggtaaatgtagttaatattatttaggaaatttccatcttatacatttgatttgaaatgatattctattacatccttttgtggggttttaaaagttgctgttgcattttgtgttatattttacttttgagtttgcacaatagtatggctccagactgagagttatgctgccctcttaatataatcgataccaggtccctccctggtatccagcgtttcatactcatactacatagtcagacagtgatagcctgcattgcaaactacttcctttttacaaaatggtcaattgaaatttgaatttttactttccataatgtagtttcagatatctatgcagcatagtgaggcagaacttaataattgtccaaaacctcaaactacttttttttaacgaatcggcacgagtgtccccatttgattgaatataatgtcaaacttctctgtgtgtgttgatcggttagttttcgtgggattacccagagcctgataattgtgatgagcatggtggcatggtgagaatacagagcctgaacatgggtatttaaaagagaactattttcataagtataggcctgtttagatcccctggcaaaattttacatcctatcacatcgaacatttggacatatacatggagtattaaatatagacgaaaaaaataagtagttacacaaattgcgtgtaaattgcgagacaaatctttttaaacctaattgtgccatgatttgacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtcttgcggtttacagacgaattctgtaatttgttttgttattagacttattagacggattaattaggcttattagacggatactttaaatgtgtgtccgtatatttgatgtgacacactaaaactttacaccctggatctaaacatagccataatgtcaaattggtgtatacaacttgattcctcttgtagtttgacaatgaaagtaataggcactgaggtccaagtcaatttttcatgtgactcgacataggaaatcttagattattcttcactagaatcagaaagtagttgttggaatccaatgttaacacacttcaacaggatcatatgatattttcctcgctccttcggactatgcatgcttctgctacaatttttaagtagtgactaacttctgctgaatgttgttcagtttgcagaaatgtgcttttggtcacatatttgttacctctggttttatatctgttgtggcgagctgcataaacagtatattgactattttccttattatgcaggcaaagcagacggttattaggttagccggcacattttatgaaatgctgaagaaatataaagtcggatcacttgaaccagacagtgccatcgtttgtctgaagcagtcttttgggttagcaggaaatgtcgcctcgaagggatatatattgtttcttctgttacaaatatctcagaaacctgcatgcttatagtaattttaggtcattcgaagatacagtgtagtgcgaaattctactacttatattataaaagggcaacgctccggtgctttatactgaaagtattatactacaagtagaactaatctgaaccgtttattcttaagggtacaatagtaaagtactaagacagattaggggtaaatttgacatcacgacaacgtcggttacgtcgttgtgttcgatcgtcggtggcggcggcggtggagatcatcttgagggcggagccgccggtggtgaaggccttcttgcggacggccttgtaccccggccacgtgacggcgcggtaggcggcgctccggccgggcgacacggcgtccgtcaacggcgccaccttgacgtccggcgggcgggccgaggaagtatccgagcgatatcctgtcacggtcgcggttgacgacggcgcggtggtatacgctgtggaagcggccgttggtgagtatgcatgtggaagagaggtcgccgacgttgaggacgaagttgcccggaacgatcgccggcaccgccacccaccggtctag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0443000, RefSeq:Os09g0443000