Os05g0490700

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Revision as of 10:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0490700| Description = Similar to SET domain protein SDG111| Version = NM_001062438.1 GI:115464606 GeneID:4339168| Length = 6021 bp| Defin...")
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Gene Name

Os05g0490700

Description

Similar to SET domain protein SDG111

Version

NM_001062438.1 GI:115464606 GeneID:4339168

Length

6021 bp

Definition

Oryza sativa Japonica Group Os05g0490700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:24162805..24168825

Sequence Coding Region

24164035..24166053

Expression

GEO Profiles:Os05g0490700

Genome Context

<gbrowseImage1> name=NC_008398:24162805..24168825 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:24162805..24168825 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatagggcgtcgaatttcatacctggtccttatcaagaactcgtggatgccaaaccaattagatcgttagctcctatgttccctgcacccttgggaatcaatgtcaaccagtcaagcaccccgcctttggtatgtgtcactccggttggccaatttcctgtcggttttggttctggaatccttcctacctttggttcaactactgccttcactaccacagcaaatggggtttcttatacaagctacaccaataatggagctattgatgccactcctatctcggcatataagaccagaccaggcattgtatcacttgatggcgatgaaccttactcaggttcagcatctggacggaagtccaagagatcatctggttcagctgctgatggttcaaatggagttaagttcaagcgccctaagccagtttacaagaattttgttgctggcaaggagcttgcctttttaccaccttcatccagtgatcccagggaggttgtggaagcagtccacatgacctttgaagcacttaggcgtagacatctgcaactggatgaaatacaagagactagcaaacgggctgacctgaaggctggcgccatcatgatggcaagcaatatcagggctaatgtgggaaaaagggtaggacttgttcctggagttgaaataggggatattttctatttccggatggagctatgtatcatcgggttgcatgctcctagtatgggtggcattgattatatgagtgctaaatttggaagcgatgaggattctgtggcaatatgtattgttgcagcaggtggctatgagaatgtggatgatgacacagatacactggtgtacagtggttcaggtggcaatagtaggaacagtgaggagaggcatgatcaaaagcttgagagaggtaaccttgctctggagaggagcctgcataggaagaacgagatcagggttgtgcggggcttcagggatccattttgcctgactggaaaaatctacatatatgatggcctctataagattcaggagtcctggaaggagagaacaaagtctggtatcaattgcttcaagtacaaactgctgcgtgagcctggacagcctgatggagctgcattgtggaagatgactcaaggatggatagacaatccagcaagcagaggcagggttatattacctgatctatcatctgcggctgaagctctcccagtttgccttgtcaatgaggtagaccatgagaaaggacctgggcatttcacctatgccagtcaagtcaaatacttgaggcccctcagttctatgaaacccttacagggttgcggatgccagagtgtttgcctgcctggtgatcccaactgtgcttgtggacaacataacggaggtgacttaccttacagctcatcaggacttttggcgtgccgcaagccaataatttatgaatgcggtgatgcttgccattgtactacgaattgccggaacagagtgacccaaaaaggggtcagatttcactttgaggtcttccggactgcaaatcgaggctggggtcttcgctgctgggatcccattcgtgctggtgcatttatctgtgagtatactggtgaggtcattgatgagctcaaagttaatctggatgacagtgaagatgattacatttttcagactgtatgtcctggtgagaagacattaaaattcaactttggtcctgaattgattggtgaggagagtacatatgtatcagctgatgaatttgagccactgcccatcaagattagtgcaaaaaagatgggaaatgtctcacgtttcatgaaccatagttgttccccgaatgttttctggcagccagttcagcatgaccatggagatgacagccacccacatatcatgttctttgcactgaagcacattcctcccatgacagaactgacttttgactatggtgttgctggatctgagtcttcaggttctcgtagaactaagaactgcttttgtggatcatcaaactgccggggagtattttaa</cdnaseq>

Protein Sequence

<aaseq>MDRASNFIPGPYQELVDAKPIRSLAPMFPAPLGINVNQSSTPPL VCVTPVGQFPVGFGSGILPTFGSTTAFTTTANGVSYTSYTNNGAIDATPISAYKTRPG IVSLDGDEPYSGSASGRKSKRSSGSAADGSNGVKFKRPKPVYKNFVAGKELAFLPPSS SDPREVVEAVHMTFEALRRRHLQLDEIQETSKRADLKAGAIMMASNIRANVGKRVGLV PGVEIGDIFYFRMELCIIGLHAPSMGGIDYMSAKFGSDEDSVAICIVAAGGYENVDDD TDTLVYSGSGGNSRNSEERHDQKLERGNLALERSLHRKNEIRVVRGFRDPFCLTGKIY IYDGLYKIQESWKERTKSGINCFKYKLLREPGQPDGAALWKMTQGWIDNPASRGRVIL PDLSSAAEALPVCLVNEVDHEKGPGHFTYASQVKYLRPLSSMKPLQGCGCQSVCLPGD PNCACGQHNGGDLPYSSSGLLACRKPIIYECGDACHCTTNCRNRVTQKGVRFHFEVFR TANRGWGLRCWDPIRAGAFICEYTGEVIDELKVNLDDSEDDYIFQTVCPGEKTLKFNF GPELIGEESTYVSADEFEPLPIKISAKKMGNVSRFMNHSCSPNVFWQPVQHDHGDDSH PHIMFFALKHIPPMTELTFDYGVAGSESSGSRRTKNCFCGSSNCRGVF</aaseq>

Gene Sequence

<dnaseqindica>2773..4791#agtcactctctcacctctcggcacggtcgcactcgcacccgcacccccacccccaccccgcgacgccgacgactcccctcccctcttccccttccccttcctcccagatcgcgcgcttgtctgtcggggagagtagaagcggggacgttggggggcgcggaggcggaggacgatggcgctgctctagggtttccaccacctctccactcgccccgccgggtgcttccgtccgttcctccgttggggctcctttgctcaggtaggtagggtttcctctcgctctcccgttggacgtgcgtgcgtgcgtgtgggtgattctccccccgattcgggcgatttttttttcttttcgttggtcaacggcccgcgtgccgttgcgagtgcggcctcgcagaatctcggccttcgtgtgtgatttagggaggggggttccaattcctagggtttcttcaatagtaatttttttgggtttggcgtgttgggttcgaatcatggtggtttagtttggtgttggggggctccaatcctagggtttgtccatcagttcatttcgtatttcagttaattgtgttgtcgaatcgtgctgtagtttgggtttgttcgaggttatctgttccgcggtagggggggttactcgcctataatcccaacttgatgtttaagcatcaggcttcatgtcaaaataaggctgctatgagttgggaatgcttgaaaaggtagccttttttcaacaccaaaaggtagcacattacaataccattgatgcatgatcctggatgcgtgttagatcggttgctttaccgcgaacatttgtgaggtgagtatttctggtggagagctgcatcaaaatgctgcctgcccgtttctgacactccggtaggtttctgaacttccctggtctgcctgccctccttgttgtctgttgcaatgggtgaaacgagcaggatgactttggatggcggcatgcatgcatgatagagcaaacgacaactaggggtttatcttccctcttatgtattgatcaatctggttttggcataattgtctcagtactgaccttatagtggataacggtaagttgtaaatatagttgaaaccgctatacgaattcaggcaactttgacgtgaaatgtggattcaagtcaagtttgctactccctccattgaattacttgtcatcttgggccaaacacacaggctagggtgatgttcaattgtgttacttgagactgtcttacccctaattaatatactttatttctactgagctgtccacattactatgctagtccagcttgttcaatttcatcacaagtagacatggtgcgtggctgaacaggattgtgctagtggtcgtgttacagccaagccaagctctagacgaaatatgctagtggttagaaataaatgagttcattggagcaatatacctactacttttattaggggtaatttgggaacataatacctacaaaacataaaaagctattcaaaaacaaaaccaataccctaaaacatcatctaaataaggatggaggggggtacatctcatgcttggcacccaagaaacttgatactccctccgttccatattataaatcgctttgacttttttcctaatcaaacttctttacatctgaccaagtttataggaaaatgtagcagcatctacaacaccaaattagtttattaaatgtaacattgaatatattttgataatatgtttgcttttgtgttggaaatgttgctatatttttctacaaacttggtcaaactttaaaaaagtttgacaaaggaaaaagtcaaagcgacttataatatgaaatggaaggagtatttaatactccctccatctacttttgatagtcatatttcatcttggcacacagaccaaggataagtaattctacttatcatctatttaaacatgctactagtcattcctcgtaaacaagcgattcattaatatttacattttttgatacccatgcagcccaatcttgtgtggaagaatggagagtcatgcattaaatccgagaaagttattaagatgataggttgttggataaattttcagatttggaaatatgactatcaaaagtagatggagggagtaattttgtgggagaaatagttttttttttagtctgactatatgatttggatgtacatcactgccaattaataagatggtaccatatgcatatgttctatctggtaccagtgaaacttttttaatgcttgaggaaatgtttcatctcaacatgggggaaggtccgatcttttgagttgcatgcactagctagttgaactaaaagcttaatctgatggagtagggcaccaggcaatttactctttacttcaacactccccctcatgtctagattcgaaatcaagacctttggccttgataccatgctatgaattgcgcttgtattcattacagcccaatggtgcagtatatataaatatggtgtatacacaataaaacccctaatcccccaatacaaagaggaaaacacaagtactaattatgttaaatacaatccaggtgccatagacaatggggaatgacagtccaatttagctcttgggtaggtgtatgctatttttgatttatgttgtttgtgaaaagagtaaaaaaaaaacagtttcatattagatccctctctgtgcttaatgttttaccaagccttgctttctccaagttttcttctatcaagtacacactaagattcttctttcttgtgcaggatttttgatacatttgagatggatagggcgtcgaatttcatacctggtccttatcaagaactcgtggatgccaaaccaattagatcgttagctcctatgttccctgcacccttgggaatcaatgtcaaccagtcaagcaccccgcctttggtatgtgtcactccggttggccaatttcctgtcggttttggttctggaatccttcctacctttggttcaactactgccttcactaccacagcaaatggggtttcttatacaagctacaccaataatggagctattgatgccactcctatctcggcatataagaccagaccaggcattgtatcacttgatggcgatgaaccttactcaggttcagcatctggacggaagtccaagagatcatctggttcagctgctgatggttcaaatggagttaagttcaagcgccctaagccagtttacaagaattttgttgctggcaaggagcttgcctttttaccaccttcatccagtgatcccagggaggttgtggaagcagtccacatgacctttgaagcacttaggcgtagacatctgcaactggatgaaatacaagagactagcaaacgggctgacctgaaggctggcgccatcatgatggcaagcaatatcagggctaatgtgggaaaaagggtaggacttgttcctggagttgaaataggggatattttctatttccggatggagctatgtatcatcgggttgcatgctcctagtatgggtggcattgattatatgagtgctaaatttggaagcgatgaggattctgtggcaatatgtattgttgcagcaggtggctatgagaatgtggatgatgacacagatacactggtgtacagtggttcaggtggcaatagtaggaacagtgaggagaggcatgatcaaaagcttgagagaggtaaccttgctctggagaggagcctgcataggaagaacgagatcagggttgtgcggggcttcagggatccattttgcctgactggaaaaatctacatatatgatggcctctataagattcaggagtcctggaaggagagaacaaagtctggtatcaattgcttcaagtacaaactgctgcgtgagcctggacagcctgatggagctgcattgtggaagatgactcaaggatggatagacaatccagcaagcagaggcagggttatattacctgatctatcatctgcggctgaagctctcccagtttgccttgtcaatgaggtagaccatgagaaaggacctgggcatttcacctatgccagtcaagtcaaatacttgaggcccctcagttctatgaaacccttacagggttgcggatgccagagtgtttgcctgcctggtgatcccaactgtgcttgtggacaacataacggaggtgacttaccttacagctcatcaggacttttggcgtgccgcaagccaataatttatgaatgcggtgatgcttgccattgtactacgaattgccggaacagagtgacccaaaaaggggtcagatttcactttgaggtcttccggactgcaaatcgaggctggggtcttcgctgctgggatcccattcgtgctggtgcatttatctgtgagtatactggtgaggtcattgatgagctcaaagttaatctggatgacagtgaagatgattacatttttcagactgtatgtcctggtgagaagacattaaaattcaactttggtcctgaattgattggtgaggagagtacatatgtatcagctgatgaatttgagccactgcccatcaagattagtgcaaaaaagatgggaaatgtctcacgtttcatgaaccatagttgttccccgaatgttttctggcagccagttcagcatgaccatggagatgacagccacccacatatcatgttctttgcactgaagcacattcctcccatgacagaactgacttttgactatggtgttgctggatctgagtcttcaggttctcgtagaactaagaactgcttttgtggatcatcaaactgccggggagtattttaattgatggatgtatcttcattgtgttggatcaacacacaaacctatttgccaggtaaattcctttgacaaaattggttctctttatattgccaaactgcactgtttacttaggtgaaatggtgaatacttactacttatgtgatgcactacactttattgttttatatcatataattgtgcatctacgtctcctacaatatacactccttttgtaatgcacttctggaccgcaaatgttgtgggatgacaaggttaagtgcagtacttctgtgtttgagagaagagggaaagagaagattgagaagatacgcaaaacgagatgagcttttagtacataattaattaataagtattactccctccgtttcacaatgtaagtcattctagcatttcctacattcatatagatgttaatgaatttatatagatatacatgtctagattcattaacatcaatatgaatgtaggaaatgctagaatgacttacattgtgaaacggaggaagtaattattttaaacttgaaaaaatgattaatatgatctttaaagtaacttttctataaaaagtttttgtaaaaaatgcatcatttagcaattcaggaagcgtgcgtgcgaaaaacgagtctcttttcttctctttgtgcacctctcagacgcagcggaaagaaggggcaaatatgttcgtctcctagcgcaataatgcagtggataacaatgccagaaaggcttcactttctgcatacaaagtagtgcacatatgctatttgaatctacctcggagcatcacatacttttgtctcttctatttgtgtttttcagatatcagcttgatatattatttgtgttgttacatctgcagaacttcctgcctgtacccccagattcgagctctggtattattccctgagaatgacgatgggtttcaacatgaactgtgaagagacagtaaattaccgtcgatttgaactgcatagacagttaaattatggttaaactctgttgtgttgatgccgcacttggtaacttggtggcctctgtacaccaccttttgttccatattttgtgggggcatgtatttgatattattgctgcaaatcgtctgtaatccatctgcacccatcctttgtaggctagcgtcagttttaactggaactctagcaattagttgtgacctgtcagatgcagtcatgtacaatgtgccggtttaggatcaccttgcattttcgctct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0490700, RefSeq:Os05g0490700