Os10g0141400

From RiceWiki
Revision as of 21:05, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0141400

Description

ab initio prediction with EST support

Version

NM_001070678.2 GI:297610087 GeneID:4348083

Length

6474 bp

Definition

Oryza sativa Japonica Group Os10g0141400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:2504065..2510538

Sequence Coding Region

2504065..2504530,2505280..2505329,2506012..2506049,2506906..2507008,2507950..2508322
,2508418..2508612,2508771..2508885,2510027..2510132,2510253..2510366
,2510521..2510538

Expression

GEO Profiles:Os10g0141400

Genome Context

<gbrowseImage1> name=NC_008403:2504065..2510538 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:2504065..2510538 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgctcgagctcgaggcgacggtgatatgcgtggacgactccgagtggatgcggaacggcgactacccgccgacgcggctccaggcgcaggaggacgccgccaacctcgtcgtcggcactaaaatgacgtcgaacccggagaacacggtcggggtgctggccatggctggggacagagtgcgcgtgctcctcgcgcccaccagcgaccccgtcaagttcctcgcctgcatgcacgggctggaagctagtggtgaagcaaatttgactgctactctaaatattgctgaactggtacttaaaaatcgtcccgacaaaagactgagtcagaggatagttgtttttgttggcagccctgtaaaagatgaaaagttagagacaattggaaaaaagctgaagaagtataatgtttctcttgatgttgttgaatttggcgaatctgacgatgaaaagcctgagaaactagaagctcttgttgctgcagttggtggcagcagccacatagttcacatcccacctggggaagatcttcgtgccgtccttgccaatacaccgataattactggagatgaaggagggggtgctgcagccggtggagcatctagatatgaatacaatgttgacccaaatgtggatccagagtttgcagaagcacttcgtttatcagagatagcaaggcaagaagctgcagccgatggagcatctagatatgaatacagtgttgacccaaatgcggatccagagttagcagaaacatttcgtttggctgcaggggaaccttcaacctcaaacactgatactgttctcttggaatctgactcagacacttatgttccttttcatgagttcatacaaaataatccttttgtgactggagcggaatctgcctcagatagacctgctgacgatgagagggcaacggaagaagggttccgtatgatacgagaagctcttgcaaggtctgcaaatgcagcacatgctgaaatatcaggcaattcctcatctgggcaggagttggaattagatatgctggcaagggtggcagcaatgcaaatacaggagcaagaggaggaagaggagggagacgagcaagacgaggcagatgatgacgtgtcctgtcctagcacacgcacgcggaagctagggcacccgcggagcagggctgaggatgcgcgcgcggcgcttgtcggggataggagccgcggaggcggcggagccgcgccgggccggctgaggtggctgaggtgcgcggaggcgcgtggagccatggaggcggcggatgcgcgcatggccggtgggggcggcggggccacgcgggggcgggcggggctggtggaggcgcgtggggccggcagaggcggcagagtcgcgcgtggcctcgcgctcgtccaccgcctcgtcgccaacggcgacccgcgctctaccccatggtcaaggagagcacgcagctctcctctgatgtcgccgtcgtgctcgccgtcctccttgaccgcttcttcgacatggagcaccgccaagcaaatcgacgacctcctcgccttctacggctggtgcgatgacgtcggcctcgcgcggtag</cdnaseq>

Protein Sequence

<aaseq>MVLELEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMT SNPENTVGVLAMAGDRVRVLLAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKN RPDKRLSQRIVVFVGSPVKDEKLETIGKKLKKYNVSLDVVEFGESDDEKPEKLEALVA AVGGSSHIVHIPPGEDLRAVLANTPIITGDEGGGAAAGGASRYEYNVDPNVDPEFAEA LRLSEIARQEAAADGASRYEYSVDPNADPELAETFRLAAGEPSTSNTDTVLLESDSDT YVPFHEFIQNNPFVTGAESASDRPADDERATEEGFRMIREALARSANAAHAEISGNSS SGQELELDMLARVAAMQIQEQEEEEEGDEQDEADDDVSCPSTRTRKLGHPRSRAEDAR AALVGDRSRGGGGAAPGRLRWLRCAEARGAMEAADARMAGGGGGATRGRAGLVEARGA GRGGRVARGLALVHRLVANGDPRSTPWSRRARSSPLMSPSCSPSSLTASSTWSTAKQI DDLLAFYGWCDDVGLAR</aaseq>

Gene Sequence

<dnaseqindica>6009..6474#5210..5259#4490..4527#3531..3633#2217..2589#1927..2121#1654..1768#407..512#173..286#1..18#atggtgctcgagctcgaggtccgtatgccctccacccctcccctcccctcccctccccatttcgtccctcctctcgcttccccccattccgcgaggcgagctctagccgcggcgagcccggccgctacggcgattgaatttctgacgggttttggaatcgcgcgcggtgcaggcgacggtgatatgcgtggacgactccgagtggatgcggaacggcgactacccgccgacgcggctccaggcgcaggaggacgccgccaacctcgtcgtcggcactaaaatgacggttcgtttgcttgcttcgctgcctccgcttacgcggcgttggattggattggattggatcttttttctttttgggtggggttttgattccgggattttgggggcgtcgtgtgcattgcagtcgaacccggagaacacggtcggggtgctggccatggctggggacagagtgcgcgtgctcctcgcgcccaccagcgaccccgtcaagttcctcgcctgcatgcacggtgcgtgacttgccccctaattgccatctaattctgtgattttgcctgtttctccaacgatccagaatgtggggtagttcattggtcaatccatgatcactttggtttggtttgttgtgtttcaggattatcagttcagataaaatgattgttggttaatggttgagatgatatattgatcaatccatgatgttgtttgccgaaaatgtaataacgattccagaatgtgggcattgatcaatcctcttttgtttggtttgttgtgctccatcaggattatcagttcagatagaatgatggttggttggttagagtgcagatagtttattgatcaatccatgatgttgttacttgtttgccaaaaatgtaataaggaattaaggacactgatcacattttttgttagtagagtagcacgaaggaaccattaacttagcttatcctcctggaattcaattatgaatatatagtcctgtcttaagaaatatacacaccttctgatcggcgagtcttctccaggatgatcagtttagatagaaatgatgttggttagcgcgcagtcgtagtttactgatcaatccatcatgttatttgccaaaatgtgacaagcacactgatctctttattttctaaggtagtgctaagaacactctaaggaagcattaaattagcttatcctcatggaatgcaactctgaacatatgttgtcaggatcactgagtctaatgtgttcagtgttcaacgaataggtaagaagaaccacgacgagttgtcgtttctgtgttgcttatggaatatgttaatcgcattttgttgtacgatttggctaaattcatgcaaagaaacaatgcttagacatatctggtgtctcccctgtatggtccacttgtttgtaaaggaattgtggtaataattgtgcatttgtactgtcataaactcatcacctatatttgctttcattttgatatgccattctaaaagtattatctatattacaaggaagagatgatatggatgtaatgagaaccacaaaatgttaaatcttgttgtgatcgatcaaatacttgatagttgttaacactgctgctttaaagaaatcatgtgtcacatattcctataactgaaacactttttatggcagggctggaagctagtggtgaagcaaatttgactgctactctaaatattgctgaactggtacttaaaaatcgtcccgacaaaagactgagtcagaggatagttgtttttgttggcaggtaccgcaaaaaagttgcatgatagattctgttccaaacttctcctatcacaagtctatgttgatgtgaattggatgccgtgtatttgtgactggagggagcaataacaatctgaaatttttatttgagctgaaattatgctacattgtcccttgcagccctgtaaaagatgaaaagttagagacaattggaaaaaagctgaagaagtataatgtttctcttgatgttgttgaatttggcgaatctgacgatgaaaagcctgagaaactagaagctcttgttgctgcagttggtggcagcagccacatagttcacatcccacctggggaagatcttcgtgccgtccttgccaagtgaacatctattatgttatctgcaggatcttacccaaatacctagtgctagagtatgctatcactaataagtaataatcctattcctttcacagtacaccgataattactggagatgaaggagggggtgctgcagccggtggagcatctagatatgaatacaatgttgacccaaatgtggatccagagtttgcagaagcacttcgtttatcagagatagcaaggcaagaagctgcagccgatggagcatctagatatgaatacagtgttgacccaaatgcggatccagagttagcagaaacatttcgtttggctgcaggggaaccttcaacctcaaacactgatactgttctcttggaatctgactcagacacttatgttccttttcatgagttcatacaaaataatccttttgtgactggagcggaatctgcctcagatagacctgctgacgatgagagggcaacggtatgctactacgtgtctatgttacagtgttactatccttattgagatcactggctttctttgtgcacaagtccaactactatcaaaccatgaactctatggctgcagaattccatcaagcatatatttgtatttgcggtgatgtctatcagtttattgcctcggagcactcatccctcaaaacatcaaaaatcactgtgcacccatgtgtgctagtgcgtatagcaacaccctatgaacttaactgcccttgggaagtgcttgttctgtcccgtgtagtattctccagaaaaaaaaaacataactctagcaacaatctgtttccaaatcagtttttagtaaacagtaatctgattatatgaatatgaataaacaggaactacatttagacttctaatcttggatctgtttagaattttaaatattccctttttcttatttgggaaccttattttcttttgaagcgccttgaatgtgttgctagaatcttgagccacttcctcatttgttgtgcttaccttctaaagatgcaaattgccctgaaaaaagattgaaatggtcatgattattaatcatcatcatttgatttctttggtgctattttactggcaggataacattaacaatataattggtgagataattatagatgctattatcaatgatttaagatttgaaatatatatcctatggttatcagcatatgcaaaatgtagctacaatataagtcaggattacttttctgggttccttgcgttttatttgggaccttttgtgttttacattcatgttcaattgatgatgtttgaagttttccatttccgtcgcagcaacttttattggggtgttgttgttgggggggggggggggttccaattttgttttatcttctatggaacattacaatgttatcagacaagctagttatttatgtcattcaggaagaagggttccgtatgatacgagaagctcttgcaaggtctgcaaatgcagcacatgctgaaatatcaggcaattcctcatctgggcaggagttggaattaggttaagcgagaagattaactacatattgttaacatgtgtccattgtttttgccatatggaggttggcaggttgcgcttctggtttttttaagtcatttctttgttaataatactggcattaaacaatgtgagtttcatcaattgtgtactttttacaacctaagattattttatttagttgtataattgatcatatttttttgctatccacatcagaaggtttattttcaacagaagaatacctgttccaactggtaaggtactgttatatgatgtcaaaaattgtgaccagctagagtaatctgaatgaaaaacataagcaaacttgttcttcacaattagcagatagagggatccaaaataaaatcataaaaacatgccatattacaaactatatatgctgatgatatctttgtgcattgtttatccaacttaggtaaggctgaattccattatcgacaatgagtaaactatgtttgtgcagacccatatccatccattgctcttgcactgcattcaaactgagtcactagtatgttttgtgaattgatacttgtttctcagaagaattgaaaggagatctatttttggttgggatggctctatatatttgttgatattctcgtcgtatgatctattagtctctcaaatgtgctgtgatgtggtgcagatccgcaaaggactggagagatatgctttcagtttgaagtggaagatatcatcaatttggtgagacatgaagcttgacgttttctcagcagccatgattgtcccatactctccacaatccttacaccagtctcaattatattgatttactaatgaacgtttatttctaaaaacaaattgcgtacagatatgctggcaagggtggcagcaatgcaaatacaggaggtatgctttttgtatgacagtttctgcttgttaacatatggtttgctattatgttcatcttaaagttaaaaaggtatatgatgcagacctgcaattttgacccacttacacatctctcacctctcaaatatcccatcaagtattgcttcgctagcttggctgtgttcccaactcatctccctcgttttccgcgtgtacacttttcaaactgctaaatggtatgcgttttgcgaaaaatttatataggaaagttgttttaaaaagtcatattaattccattcttcaagttttttatagctaatacttaattaatcacatgttaatctattgctccgtttttcgtgcggaggggaggggttcccaacccctccaagagaacagtgtgtttgaactctttgaagcacacctattttgcacttgataggagcgaagagtcaagagcttaccttttttttatatatataattcaagaaacaactgaattccgtgcattgatcttttacagttaattgtttcaacacactcccaaaaccacattaacgatgttatatttctctttgactgtttgtttcaagggttcatctaaattttctctatacctgtctgtgtaaattcatttatttccacattggcccatgcatctgaatactggtggagtgatgctgttgctttgtttgctcagcaagaggaggaagaggagggagacgagcaagacgaggcagatgatgacgtgtaaatgtcgtcaggtggttctgtttccttcgagctcctttgttagctctggaccggatttgtagtcagatgaatcgatcatagcatacataggaatatacgattggtatagccatcttcttattgtggttctctgtaactatcgattgaaccaccatattgcgtagtcaaaggaagaagtagagaaagagctgagcctgttagaagtagtaaaatactttgtacattgctgtacatgttggatcttggatttccctggttttgttacgtcgtggtagagggaggtccagtacttgcgggtatgttgtgaaaaacgttcatgtgtacccagaaacattgaggttttgagcttttttatctgctatagcctatacattggaattccttataatctgtttgttctgcttttacagggcgatgtctaattttctatgttcaccgtgagaaatgaacaatttctcataaaattcatgtgcttttatgtgtctcaaataattctcaaataatacgggaggaggagaaaacgtgcggaattggaaaatcatacgggagaataatttgttttgctgccaccaaatggaaatgtatacatattaaagggttaattggatatatgccattgcaactttgctaaattaaaaaaaataccaccactattcattatatcaactatatgacactggaaatttctaaaattggaaccatgccactcccgtcgctttttcatctcctctctcacgccatttcaggtcctgtcctagcacacgcacgcggaagctagggcacccgcggagcagggctgaggatgcgcgcgcggcgcttgtcggggataggagccgcggaggcggcggagccgcgccgggccggctgaggtggctgaggtgcgcggaggcgcgtggagccatggaggcggcggatgcgcgcatggccggtgggggcggcggggccacgcgggggcgggcggggctggtggaggcgcgtggggccggcagaggcggcagagtcgcgcgtggcctcgcgctcgtccaccgcctcgtcgccaacggcgacccgcgctctaccccatggtcaaggagagcacgcagctctcctctgatgtcgccgtcgtgctcgccgtcctccttgaccgcttcttcgacatggagcaccgccaagcaaatcgacgacctcctcgccttctacggctggtgcgatgacgtcggcctcgcgcggtag</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0141400, RefSeq:Os10g0141400