Os10g0188100
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Contents
Annotated Information
Function
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Expression
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Evolution
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References
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Structured Information
| Gene Name |
Os10g0188100 |
|---|---|
| Description |
Transcription initiation factor IIF, alpha subunit family protein |
| Version |
NM_001070801.1 GI:115481345 GeneID:4348225 |
| Length |
7875 bp |
| Definition |
Oryza sativa Japonica Group Os10g0188100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:5760564..5768438 |
| Sequence Coding Region |
5761078..5761173,5762437..5762634,5762722..5762925,5763048..5763170,5764026..5764141 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:5760564..5768438 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:5760564..5768438 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggggagcgccgacctggtgctgaaggcggcgtgcgagggctgcggctcgccgtcggacctctacggcacgtcgtgcaagcacaccacgctctgcagctcctgcggcaaatccatggcgctctccggcgcccgctgcctcgtctgctcggcccccatcaccaacctcatcagggaatataatgtacgggccaatgccaccacagataagagcttctctattggaagatttgtgactggtttaccccctttctcaaaaaagaagagtgcggaaaacaaatggtctcttcataaggaggggttacaaggtcgccagattcctgagaatatgcgggaaaaatacaataggaagccatggattttggaagatgaaactgggcaatatcagtatcaaggtcaaatggagggatcacagtcatcaacagctacatactatttgttgatgatgcatggcaaggaatttcatgcatatcctgctggttcttggtataacttcagtaaaattgcacagtacaaacaacttaccctggaagaggctgaagagaagatgaataagagaaaaactagtgcaactggttatgaacgttggatgatgaaagcagctacaaatgggccggctgcctttggttcagacgtaaagaaacttgagcctacaaatggcactgaaaaagaaaatgcccgccccaagaaagggaaaaataatgaagagggtaacaattctgataaaggcgaggaggatgaagaagaggaagctgcacgcaaaaataggcttgcgctcaacaaaaaaagtatggatgacgatgaggaaggtggaaaggatctggacttcgatttggatgatgaaattgaaaaaggtgatgactgggagcacgaagaaacattcactgacgacgatgaggctgtggatatagacccagaggagcgggcagatttagctcctgagattcccgctcctcctgaaattaagcaggatgatgaagagaatgaagaagagggtggtctgagcaagtctggcaaggagttgaaaaagcttcttgggaaagctgctggacttaatgagtcagatgccgatgaggatgacgaagatgatgaccaggaggatgagtcatctccagtgcttgctccaaaacagaaggatcaacccaaagatgaacctgtagataacagccccgctaaaccaacaccatcaggacatgctcgtggcacacctcctgcatccaaatcgaagcaaaagaggaaatcaggtggtggtgatgattcaaaagcatctggcggtgcagcttccaaaaaagcaaaggatacaaaaccatcagtggccaaagatgagacaccatcttcctcaaaacctgcatcgaaggccactgctgcatcaaaaactagtgcaaatgtatctcctgtcacagaggatgaaatcaggactgttcttcttgctgttgctcctgtcactacacaagatttggtatctagatttaagtctagactacgaggtccagaggacaagaatgcttttgctgaaattctgaagaaaatatcgaagattcagaagactaatggccacaattatgtcgtccttagagatgacaagaagtga</cdnaseq> |
| Protein Sequence |
<aaseq>MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGA RCLVCSAPITNLIREYNVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQ GRQIPENMREKYNRKPWILEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAG SWYNFSKIAQYKQLTLEEAEEKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPT NGTEKENARPKKGKNNEEGNNSDKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDF DLDDEIEKGDDWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQDDEENEEEGGL SKSGKELKKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAK PTPSGHARGTPPASKSKQKRKSGGGDDSKASGGAASKKAKDTKPSVAKDETPSSSKPA SKATAASKTSANVSPVTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILK KISKIQKTNGHNYVVLRDDKK</aaseq> |
| Gene Sequence |
<dnaseqindica>7266..7361#5805..6002#5514..5717#5269..5391#4298..4413#3242..3609#2490..2641#1424..1582#193..366#agcagcagcaaaccgaccccgttcccgtttccattttcacgccaccccaccacccgcacacccacactccacgagagacgacccaaaccggccgccaccgccgccgcgatcccccacctccgctcgccggaaggggcgccgtagccccgcccctcccctcccccctctccggtggctggcccctctccggcgatggggagcgccgacctggtgctgaaggcggcgtgcgagggctgcggctcgccgtcggacctctacggcacgtcgtgcaagcacaccacgctctgcagctcctgcggcaaatccatggcgctctccggcgcccgctgcctcgtctgctcggcccccatcaccaacctcatcagggtatgtatggatcccccctccccctccgtttccgctctcccgtgccgtgccttcttatgggggttgtggcccgcgctcgcgatctagggtttccggctgcgtgcgctgctctatttgtgcccttttgggtgggtcattgggggatagtccgggaatcgtgatgcttgatggtataatttagggttccaacacgacctccttcatgagctgaattctcttcgatgtattatggacccatattgatattgtcatggtcttgtggagtaattctgaacataaaggttgcggcttgacgtagacttgtgaagaagctccattaatcggattagaaatgggtgattcagtttcctgtttcagaacaattcattttagaagatatgaaatgcatgaatattttagaagatatgaaatgaatgaataggaagagaaaatttgtcatcaagatttgttttttactagatttcaggatgttcatttcacactgtttgtcccggtacgaattaatgttgtggttactctctcggattttattcacttacaatcatagttttgtccacagtgcaaacaatgtgggctgtcagttcatagttcttgttgtcagtgcaaacaatcttagttttgtctacagcgcaaacaaggatttcaaaaaaggtctcaatttgattatcattttggtggcttgggaaatctggaagcatacaaacgaccgcgtgtttaacagcgtccatcctaatgtaatgactgtcatccaaacggtggctaatgagtgtgtcttttggtgtatgtctggagcttctaagctcagggggttccttagtaggtcgctaaccccgcttgggcgaggtcattttttgttgtttttccatgtaaccataagtcctgtttgtttgtagggtgagggagggcttttgcttctctacccacgctttcctcctctcttaatgaaatgatacacagctttcttgcatattcaagaaaaacaaagttcttgttctggtggcttgctatttggttcatctgcttacactgacatcctctgtggatctttcggttgcaggaatataatgtacgggccaatgccaccacagataagagcttctctattggaagatttgtgactggtttaccccctttctcaaaaaagaagagtgcggaaaacaaatggtctcttcataaggaggggttacaaggtcgccagattcctgagaatatgcgggtatgcattcatggaaatcactgttttatcatgtgctttctgttttggaaaacaaatgacttttgaatcttcagtcttcactgtatgtcttggtaaagtgttttaattatcagatgtaccaatgtagcattacatagtccatttcctcataactatacaccattttaatctcccaatacctacactcaatggtatgcgaaaaagctgatgaggtcatctatttccattcggggaaaaggtgttggtttggtccgtcaagtttcagactagtcttcattttatgtaaaaaatttaaacaaatatatgttttcgtgtggttgacatattgggctagggcttttgctaacacaagatgtcaaaaagagaaactggaataaatatagaaggacaaaaaaatatctttggtatttttttagttaaccatgcaaggcccaaaatagattgatgaagatatgacttctctcttccatttcattactccctttgactttcttgtggagccatactttcaaattcaaatagtttacgggcaacatctagttgttatagtgaaccccccaccgcacatgatttggatggatcagttttaattccactataggaccacatgaatgagaatttgcataacggcgtattgaaaaataataaaggagggatactatggtttctactttcctttagtccaatgcatctcacccagtgggtcacattcaaacttgcatgatagcacagatctattgcttctacattaaatacttcccacaatttattttactttgcttgtaccagatgttgccattttctgtacggggttggggtttttgagccatagaaactctgaacatctgtatgaagttttgtttggttggctctgttaactttgtgtatatatgttttgcaaaactaggaaaaatacaataggaagccatggattttggaagatgaaactgggcaatatcagtatcaaggtcaaatggagggatcacagtcatcaacagctacatactatttgttgatgatgcatggcaaggaatttcatgcatatcctgctggttcttggtaatagacttgctcaatattttagatgctcgcttttaatcaaagttgtcaaaatctcatggatgcaaaattgaagatatttttggatatgctaaaaaaactacagaagtacgatattatgataatatttcattaaacattttacttgaccatttccatatgtccaaacatgatttagtggacaaaactaaagtgattttgtcgctttcacccttgttagcaacaaaggtaggtttcaaaaagttgttcatgggtgtgcttagcattcctttatattataatccaaatcaattttgaattttaaagtttgtttctttaagaataattgtaggtggattttttttaacttgccttcttagatcatgaaaaagaatcaggcaataaaagtgttgaagaaaatccctaaaactaatcctaaagtcgggtctaaaattcaaaataagctttggattataatccaagggagtgccaagcacactgtttagaaactacagtgatagtcttagcaatggtcctaatactactagttctttaattaagactgaaagtcagataaaattgtctaatttgattatctgtttctttgttatgtccttttaggtataacttcagtaaaattgcacagtacaaacaacttaccctggaagaggctgaagagaagatgaataagagaaaaactagtgcaactggttatgaacgttggatgatgaaagcagctacaaatgggccggctgcctttggttcagacgtaaagaaacttgagcctacaaatggcactgaaaaagaaaatgcccgccccaagaaagggaaaaataatgaagagggtaacaattctgataaaggcgaggaggatgaagaagaggaagctgcacgcaaaaataggcttgcgctcaacaaaaaaagtatggatgacgatgaggaaggtggaaaggatctggacttcgatttggatgatgaaattgaaaaaggtgtgcttctgaatcttgcttcaaaacaatacttttgcagttgatctacacaactaatagttgtatttatactaccattgcatagtaccttgatgtttttactttttcttggcctgaagtttctttttcatatgtttaatttttttagagatatatatttgttattggcatattctgtaatgtgttgtttgaggttattaatgcctaatatacttaaaaatttaaaatgcattttgtactgccagtgtggtttcatgacaaaaattggaatgcatttggttcttccagtgagatttcatgacatatgtaaaatcagttgtggattcagagtacttatttagtaacacttttaaaatacgatatgttttttataggccattctcatcaaatttgtttaagagtctatagacaccatgaagcataagcttgtggtaattccttttgtctgatggccttctttacattggatgacctccacatgttacttgtgtttatatattttttagcaaattctcagctacaatgcataacatccccaattcaccatcacattgggcttcatttgctcttttgcggaagatcaattctgaaatttgtgcaacgcgaataaaacagtaacaatgcctatatattttttgggcattttgaagtctgagattgacatctctgttgggaattgccttgtcaggtgatgactgggagcacgaagaaacattcactgacgacgatgaggctgtggatatagacccagaggagcgggcagatttagctcctgagattcccgctcctcctgaaattaagcaggtagacaggattattcatttcaaaataattatgagttctgttatcacagtttgtgtttctcgtataataccttgaatgagcacactttgacatctcatctgttactgcaatgtgacaagtatctgatttgtaaatattcatatggtttctgatatcacacctcctgataatgcatgtctcatgtaacagttttaatccacatgtgactttttgtgttgaatttaatatgacaaagcagtcaacaaaataaattgacctgaagtagaagtgggataccttgttatgatggtcataaacctttgtttgaaaatataaggatttctaggattcgaattttgtaccacaatataagcattccagcactgattcccatcatgtcaatgattccaaagccaattggatgattggaaacggaatctaagcaattcaaaattagaaaattgataactgaagtggctaaaaaaggaatcttttgacctaaccttagtacttgctagacaacctagaaatccttatattttggaacgcagggagtaggatttagctgtgttaagtttctgttcattgttataaggttctcattcaatgctaatagaagtatccgatagctattctagttctttgattagagaggctttgtattgcttgcagctcattattgtgggatctcacctcttgcaaaaatgccgctagaacaagaagaatacctacccatatatgatgaatgtagtgaacctatttgaaagcaaatatgcttttcctcttcccttttgttatttgctactttttcttgctcataggtgcgactgttccctatcagaataacaaatattctgtgacaatggattcttttaggatgatgaagagaatgaagaagagggtggtctgagcaagtctggcaaggagttgaaaaagcttcttgggaaagctgctggacttaatgagtcagatgccgatgaggatgacgaagatgatgacgtaataatttattctctcaacttaaatattgtattttccatagtgtattaggagggtaaactttggccagaaaggatgttaaaattatcctgatgagtttatgtttgtatttctccatgtagcaggaggatgagtcatctccagtgcttgctccaaaacagaaggatcaacccaaagatgaacctgtagataacagccccgctaaaccaacaccatcaggacatgctcgtggcacacctcctgcatccaaatcgaagcaaaagaggaaatcaggtggtggtgatgattcaaaagcatctggcggtgcagcttccaaaaaagcaaaggtggaatctgtaagttcttacacactattatcaagaatacttcttttgatttagtctctaaatgataaatcctttcattatttttaggatacaaaaccatcagtggccaaagatgagacaccatcttcctcaaaacctgcatcgaaggccactgctgcatcaaaaactagtgcaaatgtatctcctgtcacagaggatgaaatcaggactgttcttcttgctgttgctcctgtcactacacaagatttggtatctagatttaagtctagactacgaggtccagaggtaggttttgtcagtttccgtttttatttattttggatactaattcaaacaaatcttttaaattcaagtaatcacccaaaggcacagttattaatcttagtgaatcatgtagagattagagaagaagaaaatacatgttgattgctttgactgacaaccaaaacccccctggactatggagtccagaggtagatttgttcaatttctttgtttactttgctctggtcatatttatggtagcccaatctatattcgcatgctgcacctaaaattgcttgttcaattcatcttttataccagaatggcatgaggctatctaagtatctatcttgtaaaatgttcgaaacagagaaacctgtttgcattgactggttttgctgataactggtttcaatcctgtactccagttccattttccaaagcccctttggctacccatggaactaaatggggcattgctctgttggctatggttgcaacgtctaatctgagcagcaccagcatttgttgcataattgcttcagttcattgtcgtaaaatttcttttggccatgtcagcttttttatgaactctgactatcatttgtttgccacaattttgttagcataccacaattacgtaagtctagctagttatggcaaagttggccatggaattagctcctatttacctaactttagttatggcaaaattggccatggacctattttctaagtacacattaggaattcttttgatttgtcatgaactcattacttcattagtatgtgaaggatttatttgtggtattttttaacatcatgtatgaacataccttttgttcttgagcctgagggctttgtgggataggtctatcggaaaggaaggttgtcactttgatgtagccgtatttgatgcattatccctcaaatcttaaaatgaaaaaggctataaatatcatagtagtgtttcattatatatttcagtaggttgccctatttctatggtatatcccctcccccattagtttgaccttttagaataaatgctgtcaaactttgctcattattatgtttggttctatcttggtgatgaaagccatattaatagatttgttattgaaaataatactatgaaggtatatattaacataaaattataagaattaatgattaaaaattgcatcttggaggccgcagccacacatgaaactatatccatagccgttatggtttgcctttcagctagtgcatgttttaacgttgattgttttcgcaccgcaggacaagaatgcttttgctgaaattctgaagaaaatatcgaagattcagaagactaatggccacaattatgtcgtccttagagatgacaagaagtgaagagcaaaactaaagtggtgctttcttaaaatgcaaccttttgctttgctgtgccttttggcataacatgtttgtaagataagtgtattggaagaattggccttgtaacctgatgtatttagggcctatttggattgttaccctaccaattttttggtagtgccaaaatgtaggcaagttttggcactaccaaatctttggtaaagtaagattgcattgatcatatttggtttgctaccaatatatagctaaaatgtaaaattgtagtgaagaatattctagatgataccaaatctaaattaggtattaccaatgaataggcttcgatccaaattaaacacaactactattcaaattaccaaaatattggtagggcatgtttttggtaacaatccaaataggcccttagatcttttttaacttaaggtcattgatcacttatcattgttgctgccgcgcttttagacatcctactggaaaccagctgtttctaaaactacaggaaatttttggt</dnaseqindica> 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