Os05g0506000

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Revision as of 10:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0506000| Description = Similar to MS5-like protein (Fragment)| Version = NM_001062515.1 GI:115464760 GeneID:4339251| Length = 2236 bp| Def...")
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Gene Name

Os05g0506000

Description

Similar to MS5-like protein (Fragment)

Version

NM_001062515.1 GI:115464760 GeneID:4339251

Length

2236 bp

Definition

Oryza sativa Japonica Group Os05g0506000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25058560..25060795

Sequence Coding Region

25058651..25058776,25059534..25059746,25059842..25059997,25060108..25060512

Expression

GEO Profiles:Os05g0506000

Genome Context

<gbrowseImage1> name=NC_008398:25058560..25060795 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25058560..25060795 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcgtcgtcgaagaggagaggcggggctggaggtggaggagcggagaagaaggacctcttccatgtcgtccacaaggtgcccgcaggggacagcccgtacgtcagagccaagcacctgcagcttgtcgataaggatccggagacagccatcgtgtggttctggaaggcgatcaactccagggacaaggtggatagtgccctgaaggacatggctgtggtgatgaagcagcaggatcgcgccaaggaggcgatagaagccatcagatcattcaggcacctctgctcaaggcaggctcaggagtcccttgacaaccttctgatcgacctctacaagaaatgtggcaaagtcgatgaacagatcgatctactgaaacagaagctgaagatgatataccttggagaggccttcaacgggaaggcgaccaagacagcacgttcccatgggaaaaagttccaggtctctatccagcaggagacttctcgcattctgggcaatcttggctgggcttacatgcagcagagcaactattcagccgctgaattggtgtatcgcaaggcgcaaagcattgagcctgatgccaatagggcatgcaaccttgggctgtgcctaattaagcagagcaggcatgatgaagcaagacaagtacttcatgatgttgtgctacgcagaatctccggatcggaagatgacaaggtggtagcccgagctaagcagcttctccatgaacttgagccggtgacgcatgttacgtcgccaaataatgctgggctgagtgtcagtgaagagatcatggagagactagaccttgtgttgaacgaatggacgccgttcaggtcaaggaggctgccggtatttgaggagatagctaccttaagggaccaaattgcttgttga</cdnaseq>

Protein Sequence

<aaseq>MASSSKRRGGAGGGGAEKKDLFHVVHKVPAGDSPYVRAKHLQLV DKDPETAIVWFWKAINSRDKVDSALKDMAVVMKQQDRAKEAIEAIRSFRHLCSRQAQE SLDNLLIDLYKKCGKVDEQIDLLKQKLKMIYLGEAFNGKATKTARSHGKKFQVSIQQE TSRILGNLGWAYMQQSNYSAAELVYRKAQSIEPDANRACNLGLCLIKQSRHDEARQVL HDVVLRRISGSEDDKVVARAKQLLHELEPVTHVTSPNNAGLSVSEEIMERLDLVLNEW TPFRSRRLPVFEEIATLRDQIAC</aaseq>

Gene Sequence

<dnaseqindica>92..217#975..1187#1283..1438#1549..1953#agatcccgcaaaccgcgaaacaaaccacccccgcatctctctctctctctctcttcgtcgagctcctcctcctccgctgctgctgccgcccatggcttcgtcgtcgaagaggagaggcggggctggaggtggaggagcggagaagaaggacctcttccatgtcgtccacaaggtgcccgcaggggacagcccgtacgtcagagccaagcacctgcaggtgattgcacttgttcttcttcttctctgttcttgccgattctctattgagctttttcctcttcttgatgagtaggagtagtatagtagacgattcatgattgtaccagctaattaaccagcattgaattggtaggtatagggtatagcttagcttgattatgattatgcacgagtgttccgtttgtcagttgtgataacttgtattcaatccgagtgagtttttttttattaattcggtatgtttaatttaggaattttttcatgccaattggcggttttcttggcactgaaaggagggtatctctcgcgttgattattagatctcctttttttttcttttcctaattcttgccgtaaatattttcctgtccatgaaattatagccgcaaactgactcgttttcctttcaatagtaacggctaactgtcgtcgtatgtttatccccaaggttgttgtttagtttgatattaattggagttattcagttatttgctttgtctctttgcagtttgcaccatagtagtagtactgttcattgaatcgttgactgtattatgatccaaacacagggatgatttgattgcctaattttgaggtccacgagattaatattgaactacttatcatgctttaaaaaaaatccagtcacacactttaattcaggattagtagagacacaagaatttactgaagttctcacagaattcagtagtagttgctaacctcggcaaaacaacttcgtttcgatgaatcagcttgtcgataaggatccggagacagccatcgtgtggttctggaaggcgatcaactccagggacaaggtggatagtgccctgaaggacatggctgtggtgatgaagcagcaggatcgcgccaaggaggcgatagaagccatcagatcattcaggcacctctgctcaaggcaggctcaggagtcccttgacaaccttctgatcgacctctacaaggtgtgtttcgttctagttctacctgcatatctcacaaaattactaacaaaatgattgctgcggtgtactgacaatatgcgggatttcattttcagaaatgtggcaaagtcgatgaacagatcgatctactgaaacagaagctgaagatgatataccttggagaggccttcaacgggaaggcgaccaagacagcacgttcccatgggaaaaagttccaggtctctatccagcaggagacttctcgcattctggtacagattaccgctccccctgttactcctactgattggtaatttggcatgtcaatgctgcattcagttacactcgaagttactgaaaccttcttgtgtgcatattacagggcaatcttggctgggcttacatgcagcagagcaactattcagccgctgaattggtgtatcgcaaggcgcaaagcattgagcctgatgccaatagggcatgcaaccttgggctgtgcctaattaagcagagcaggcatgatgaagcaagacaagtacttcatgatgttgtgctacgcagaatctccggatcggaagatgacaaggtggtagcccgagctaagcagcttctccatgaacttgagccggtgacgcatgttacgtcgccaaataatgctgggctgagtgtcagtgaagagatcatggagagactagaccttgtgttgaacgaatggacgccgttcaggtcaaggaggctgccggtatttgaggagatagctaccttaagggaccaaattgcttgttgatccctttattcgcaaggtttttgttcttttgcttaatgtgcatacgggtgcgttgccttagaaattcatgtgcatatgtagaggctgttgtgggcttgtggcagtgcgagtaatggagtaaaggttgtgatgttcagatagatatcatatagctagagatcatgcaaagcatccaaggaatagtgtattttgtcttcatgttctatgatgcttataatgtgttgtaaacattctacagactacaagaaatccaagtgtacacttcacttggcttgttggaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0506000, RefSeq:Os05g0506000