Os10g0370000

From RiceWiki
Revision as of 21:07, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0370000

Description

Protein phosphatase 2C-like domain containing protein

Version

NM_001070990.1 GI:115481723 GeneID:4348468

Length

4740 bp

Definition

Oryza sativa Japonica Group Os10g0370000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:11886750..11891489

Sequence Coding Region

11887170..11887337,11887417..11887545,11887634..11887777,11887891..11888060,11889202..11889289
,11889532..11889601,11889879..11889940,11890780..11891180,11891267..11891432

Expression

GEO Profiles:Os10g0370000

Genome Context

<gbrowseImage1> name=NC_008403:11886750..11891489 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:11886750..11891489 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggagctgccgctggcggcggggctgctcgacctgcgcccctgcaagctcgcccctccccctcccccgcccctccccgtctccccctcccctcgccaccaccgccgcccccactccaccgccaccgcctgccgcgccgcccccgacctccactcctccaccgagctcgccgacgggagcatcgtcttccgcttcgcgcgcccccgggacgacgacgacgaggagcagcagcagcggcgggcggacgccgtggctcccgaggccgcggccgtcgtcgaatcagggctcgacggtgacgccgccgcagctgctgaacctgaggcccgggatggcggtggagaaggggaggtgacggcgacggcgacgggtttggacgcggaggaggtggtggcgagtggaggagcggaggcgacggcgacctccggtttggaggatgcgggggaggaggcctcggatggctccaccgcgcgggattccgacaccgacgtcgacaccgagtccagcgcctccaccgccgccgacgacgaccagcccgccgagttcgccgtcccgccgccaccggcggaagaagtttgtaacaaggtagattgggaaaaggacacttcagaggtgaagaatactgataggatggttccagtagcctcatcaacgcttgtgttggcatcaggtgctgcgatcttgcctcatccttctaaggcagcaacaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatggagttggccagtggtcatttgaaggtatcaatgcagggctttatgcaagggagctaatggatggttgtaaaaagttcattatggagaatcaaggcgctgcagatattaaacccgaacaagttctttccaaggctgcagatgaagcgcactctcctggttcttccactgttttggttgctcactttgatggccagttcctcaatgcatcgaatattggagactctggatttctggtgataagaaatggagaggtgtaccaaaaatcaaaaccaatggtttatggtttcaactttccactgcaaattgagaagggcgataatcccctgaaacttgtacagaattatacaattgagctggaggatggtgatgtcattgtaacagcaagtgatggtctttttgacaatgtgtatgagcaagaagtagccaccatggtctcgaaatctttacaagccgatctcaaaccaacggagattgctgaacacctggctgccaaggcgcaggaagttggtagatctgcagccggaagtaccccattctcagatgccgctcttgcagtggggtacctgggtttcagcgggggcaaactcgatgacatagccgtcgtcgtgtccattgtcaggaaatctgaaatctaa</cdnaseq>

Protein Sequence

<aaseq>MAELPLAAGLLDLRPCKLAPPPPPPLPVSPSPRHHRRPHSTATA CRAAPDLHSSTELADGSIVFRFARPRDDDDEEQQQRRADAVAPEAAAVVESGLDGDAA AAAEPEARDGGGEGEVTATATGLDAEEVVASGGAEATATSGLEDAGEEASDGSTARDS DTDVDTESSASTAADDDQPAEFAVPPPPAEEVCNKVDWEKDTSEVKNTDRMVPVASST LVLASGAAILPHPSKAATGGEDAYFIACDGWFGVADGVGQWSFEGINAGLYARELMDG CKKFIMENQGAADIKPEQVLSKAADEAHSPGSSTVLVAHFDGQFLNASNIGDSGFLVI RNGEVYQKSKPMVYGFNFPLQIEKGDNPLKLVQNYTIELEDGDVIVTASDGLFDNVYE QEVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKL DDIAVVVSIVRKSEI</aaseq>

Gene Sequence

<dnaseqindica>4153..4320#3945..4073#3713..3856#3430..3599#2201..2288#1889..1958#1550..1611#310..710#58..223#ctctctctcgagctcatctccattttcaaatctctctttgcttgctcgaggtgagccatggcggagctgccgctggcggcggggctgctcgacctgcgcccctgcaagctcgcccctccccctcccccgcccctccccgtctccccctcccctcgccaccaccgccgcccccactccaccgccaccgcctgccgcgccgcccccgacctccactcctccaccggtaagcagtagcagcagcagcagcctagcagctagcgtctctgccgctctcggtctcacttgtctctctctcttgctcccgcccagagctcgccgacgggagcatcgtcttccgcttcgcgcgcccccgggacgacgacgacgaggagcagcagcagcggcgggcggacgccgtggctcccgaggccgcggccgtcgtcgaatcagggctcgacggtgacgccgccgcagctgctgaacctgaggcccgggatggcggtggagaaggggaggtgacggcgacggcgacgggtttggacgcggaggaggtggtggcgagtggaggagcggaggcgacggcgacctccggtttggaggatgcgggggaggaggcctcggatggctccaccgcgcgggattccgacaccgacgtcgacaccgagtccagcgcctccaccgccgccgacgacgaccagcccgccgagttcgccgtcccgccgccaccggcggtatgcctctccccttccctcacctgctcaattttactcctctgatttcgatacgccctgattgatattcctcacccgatttcacccgtaccttcatcaagaaaaatatatttgtagtaattttttttctgaaaatggatgctgtgaattgtgaaacatggttaatttctgaaaaaaggatgctgtcaattgtgaatgattgaagatggtaattttttcttgacaaggttgggtgactcggttaatgcttcaatcgatttgtaatttgtttactagtatctgtttacaaggagtaaattgaagagttcatgttgttggtacctgcactagtaaatcatttactaagttcatggacacacacaaagtcagaaacttgaagcattttggtggaccctcggtttcctctttttttttttttataaccgcagctcactgatgtctgtaacaattttgtttggatgagggccagttgttatgtggtcgctttccccatctgttcatactcgggatcaatgttgtatatcatctgttgttgtcacgatatttttgttttgtctgctcctgccttatactatgacagtatcttgtaagggatcataccttatactaaaacacactgcctctgtttcaaatcaacacttcataaaaactgggtccagacatacaccttgagagtttggtatatgcctctagaaatttagtcgcacaatggtaatattgttgtgaatatgatctgtacttgggggcatagatcttgtgctatcagatatttaccgcatggtggtatttagtttgatttgtgcaagtgagggcctaatgttctctctttttccctataggaagaagtttgtaacaaggtagattgggaaaaggacacttcagaggtgaagaatactgataggtattaatttgttttcttacttcgatttcaagtgtttcaaatcataaaggcattcagtaaattattaatagctcatatatttccatacaagtttgtgcagtaatggttgtgcgcatctgatgcttacaaagctggatatgacctgtattttgtcttcatttagttaggcaactttttcatgcaaacatatcttatggcttttcctgtctttatgcttttaaacctggacctccaaaaacagctttaataattttgtcatgttgtaattcatataaaggatggttccagtagcctcatcaacgcttgtgttggcatcaggtgctgcgatcttgcctcatccttctaaggtactaataattgcgctacgtgttctcttttatgctgtatacctttggactttagtctatcttgaccctatcacagaagcaaattcatttaaagtatgtctattgctgaaataagcagttaattattgcttccacattctacatacttttctttggtactccatttgataacactattactgtaagtcagaaacactaatggttcacctgatgcttcaattatggtttgaataactttccaggcagcaacaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatggagttggccagtggtcatttgaaggtaaaccgcatgaatatttcagtgcaacagtgtgaactaggctttccattccaggcgcaggtttccacattccaattctattcttaaattttagttactgctcactttagaagacaatgtgttttccaaacatgtagtcaatccttatccatcagaaaattcaagaaatgtttgcttgttaaacaaaataaacacaaggaccttggcagattttattgacttagtgactatatcatctatagtctatagatgttggacaagacatataaagcatgttttacatttttactatagtgaaaattaattgactgatgatgttattaaccaaaagcaactttttcagtatttaaagaatactttagtattcattttctttctggttccttgagtattttatgggtttgacatcgtagtgggaaaatacgaaccaactttagcttctttacgtccagctcagtaagatatcaagtactgccagatagttactactagcaagaataatggttgaggaacaagggacagagttctctttctaaactccataggaatgggaaaatggtgtcctgcctgtgggcctggtagcaggacgatggcaattcaaagaccatcagggttacacaataaccatcgagttgaatagccatagcaggtgctgggagatgaatatgggtttttctgttttacaccccgtattggatctactcttcaccaaaagttgacttgcacaaaagaaatggaactataatactgtagaatggatgtggaaatggtcaaatggaggttgtagaataagtttattactactagtacaagaaataggaacatccttctttagaagaatattcttttgaaatgtcaacccacacaggccactggtctaccacaggctctatatatggatatagaatgaaaggcatacaacctggtttggaccaagtcttcaagtaagagggcaaaatgtgttcatatcggtagtacccttgggccaatgttaacattcactcatttatttattagctgcaaagttaattttgagccaacactatgtgtctgatacatgttcatactgaagttcttagtgtatcataattattcatgggaatgctgaagtgctaagttgttgtataatttttgtaaacaggtatcaatgcagggctttatgcaagggagctaatggatggttgtaaaaagttcattatggagaatcaaggcgctgcagatattaaacccgaacaagttctttccaaggctgcagatgaagcgcactctcctggttcttccactgttttggttgctcactttgatggccaggtctgttcttttgatcaagactcttcttgtttctaatgaaccaattgcactgtatttattgttacatttgtcattgttttagttcctcaatgctacatttgtcattgttttagttcctcaatgcatcgaatattggagactctggatttctggtgataagaaatggagaggtgtaccaaaaatcaaaaccaatggtttatggtttcaactttccactgcaaattgagaagggcgataatcccctgaaacttgtacaggtgcaaagattagcctttgtactataaatcatgtgcaatcgtattaagtaatttaaaactaacattattgtttacccttttccttcagaattatacaattgagctggaggatggtgatgtcattgtaacagcaagtgatggtctttttgacaatgtgtatgagcaagaagtagccaccatggtctcgaaatctttacaagccgatctcaaaccaacggttagaatcaacttgcctcataaataaaatgcctagcgaatctgaacattgaatcattgcatggctattccacttgcaggagattgctgaacacctggctgccaaggcgcaggaagttggtagatctgcagccggaagtaccccattctcagatgccgctcttgcagtggggtacctgggtttcagcgggggcaaactcgatgacatagccgtcgtcgtgtccattgtcaggaaatctgaaatctaaattgtaaaagacatccatgatccatgatgtccccctctcaagtttggttgaagctgcactcctagcctcctagcaaggtgcaccacactcatcaatatattgtacaaccagaagtgcagctgctgaaaaagactatctgtgagcgaggagcaagaggccattaacctgtgtaagtatctttgagccgaattgctcgcggtttttgggctaatttagcattggaaagtaatattgtgatccttggttcgagttgtaaaccggtggaagaaatctgccgtgtgtgtgagagacaaccgtgcataggaaaggaacatacattgattatgtgacatgaactggaaattgccgcaagacacctcctggcactggcaactgtaaccatcacacctcatttcacattaacctgatgtttacccatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0370000, RefSeq:Os10g0370000