Os10g0377800

From RiceWiki
Revision as of 21:07, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0377800

Description

Similar to Pyridoxamine 5-phosphate oxidase

Version

NM_001071012.1 GI:115481767 GeneID:4348496

Length

5832 bp

Definition

Oryza sativa Japonica Group Os10g0377800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:12324893..12330724

Sequence Coding Region

12325301..12325367,12325453..12325548,12326219..12326289,12326421..12326525,12326910..12327000
,12327092..12327142,12327239..12327327,12327428..12327670,12327788..12327951
,12328644..12328749,12328836..12329003,12330217..12330255,12330343..12330699

Expression

GEO Profiles:Os10g0377800

Genome Context

<gbrowseImage1> name=NC_008403:12324893..12330724 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:12324893..12330724 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgaccgtggcggcttccgcactccgcaacaacaaaaaatccaccgccgcggcctgcttctcccttgctatgcccttcctcctctcctcccccacccctcctcccccacctcactcctcctctctcccccggagccctagccctcgccctcgcctcccgctcccgccaccccgccgcgccgccctcgtcaccgccgcgcaggaccctcggtggcggcgggccatggcgtcgctggccgtctcggcgtccgcgtcggcgtcgggggaggaggtgacgcacctcgcgcagcgggaggcggcggagatcgacgagcagctcatgggcccgctcggcttcagcgtcgaccagctcatggagcttgcggggcttagcgttgcggcggcggttgcggaggtttacaagttgggtgaacatacaagggtgctagtaatctgtggtccaggaaataatggtggtgatggtctggtagctgctcgtcatcttcatcactttgggtacaagccttctgtatgttatccaaaacgcacgcccaagcctctgtattctggcctttgtactcagcttgaatcactaacaatccctttcgttcctgttgaagacctacctgcaaatttatcggaggagtttgacatcattattgatgcaatgtttggtttttcgtttcatggaacaccaagaccaccatttgatgatcttatcaacaggcttgtttcactgagtgctattgataattctgctaaaagaccagcaattgtttctgttgatatcccttcggggtggcacgttgaagagggagatatcaatggaggagggtttaaacctgatatgctggtatcattgactgcaccaaagctctgtgcaaaaaaatttaccggtccacaccattttcttgggggtagatttgttcccccacctattgtgagcaaatataagcttcatcttcctccatatcccggtacctcaatgtgtgtgagaattggaaaagctccatctgttgacatttcatctctaagagaaaattacatctcccctgaacttctcgagaatcaggtgatgcctgatccatttgatcagttcgttagatggtttgatgaagctgttactgctggtctacgtgaaccaaatgctatggctttaacaactgccgataaggagggaaaaccttcgtcaagaatggttcttttaaagggtgttgataagcagggatttgtttggtatacaaattatggtagccagaaggcacatgatttatctgagaatccaaatgccgctctgcttttctactggaatgagatgaaccggcaggtaagagtagaaggttctgttcagaaggttccagaagaagaatctgagaagtatttccacagccgcccacgagggagtcaacttggtgcaatagtcagcaagcagagcactatcattcctggaagggaagttcttcagcaggcgtacaaggaattggaacaaaagtattctgatggcagcgtgatcccaaaacctgattactggggtgggtacagattaacaccaaaactttttgagttctggcaaggccaacagtctcgactgcatgaccggcttcagtattcactgcgagaagtagataggagcacagtatggcacatcgagaggttgtccccttga</cdnaseq>

Protein Sequence

<aaseq>MLTVAASALRNNKKSTAAACFSLAMPFLLSSPTPPPPPHSSSLP RSPSPRPRLPLPPPRRAALVTAAQDPRWRRAMASLAVSASASASGEEVTHLAQREAAE IDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHTRVLVICGPGNNGGDGLVAAR HLHHFGYKPSVCYPKRTPKPLYSGLCTQLESLTIPFVPVEDLPANLSEEFDIIIDAMF GFSFHGTPRPPFDDLINRLVSLSAIDNSAKRPAIVSVDIPSGWHVEEGDINGGGFKPD MLVSLTAPKLCAKKFTGPHHFLGGRFVPPPIVSKYKLHLPPYPGTSMCVRIGKAPSVD ISSLRENYISPELLENQVMPDPFDQFVRWFDEAVTAGLREPNAMALTTADKEGKPSSR MVLLKGVDKQGFVWYTNYGSQKAHDLSENPNAALLFYWNEMNRQVRVEGSVQKVPEEE SEKYFHSRPRGSQLGAIVSKQSTIIPGREVLQQAYKELEQKYSDGSVIPKPDYWGGYR LTPKLFEFWQGQQSRLHDRLQYSLREVDRSTVWHIERLSP</aaseq>

Gene Sequence

<dnaseqindica>5358..5424#5177..5272#4436..4506#4200..4304#3725..3815#3583..3633#3398..3486#3055..3297#2774..2937#1976..2081#1722..1889#470..508#26..382#agacgggtgggcaactggggcgacgatgctgaccgtggcggcttccgcactccgcaacaacaaaaaatccaccgccgcggcctgcttctcccttgctatgcccttcctcctctcctcccccacccctcctcccccacctcactcctcctctctcccccggagccctagccctcgccctcgcctcccgctcccgccaccccgccgcgccgccctcgtcaccgccgcgcaggaccctcggtggcggcgggccatggcgtcgctggccgtctcggcgtccgcgtcggcgtcgggggaggaggtgacgcacctcgcgcagcgggaggcggcggagatcgacgagcagctcatgggcccgctcggcttcagcgtcgaccagctcatggtccggtactcctccctccctcccccggcctccactcggcttctctgactcatccatcccttgggtttggtgtgtgtgtgtgtgcaggagcttgcggggcttagcgttgcggcggcggttgcggaggtaaaggcacccgctcagaggctttgtttcccccgatttgggtgatgatgtttactgtgtgatgggtttcagtacctttcaattttggttgctgtggcggtttcaatcgtttcttgctacttatttggccactacaggagcaactgttcatggtcattatggacaaaacctttacaaaggggataggctaggctgtgtttagttccaccggcaaaaaaaaattgctgggccacatcaaatatatagacacacatttgaagtattaaatgtagactaataacaaaacaaattacataatccacatgtaaactgcgagacgaatttattaagcctaattaatccgtcattagcaaatgtttactgtagcaccagattgtcagatcatggcacaattaggcttaaaagattcgtctcgcaatttacacgcaatctgtgtaattagtttttttttgtcaatatttaatactccgtacatgtgttcaaacgttcgatgtgacggggcaaaaaaatttgccggtggatctaaacacccccttagttacgtttatatacgagaaagcgatatctagtgacataacgcaaggtcttccaaaagtagaacaaatcttcaaagcgcgttcaattgattcactatcgctgaatctcgaaaggaatttgtgctcccaatacgtaactgccttacctgaatgtgttgatattatgctggagtattgtgtttcttcaagacgtggtagtttgattaataagcatgtaaattagcgactctaatcagcaacgaggagttgcacaactttttggctttgttactgtagctggtgtactcgtgctctgcagttttgtttcaagatttttttaaaaaatcatgcatataatcatctaggttggaatgcagcactaccgcattatcatgctgtttcctgttgttgctgaacatgatgagaaatgcaactaatcatcttgtgcctggctgtctgctgtcaaagaatggactagccaatacagcaatgaagtgatttaactgtttaatgggtttgtgtaattccactaactttgagtagagaaaatgaaatctggtcagacctaaaaaaatggaactgtcatcatgtggttcacatttttctttctttggatttccttcttgtacctgtttgttactgttatgagtcttaattagtgatactttattgtattgaccccccaaaaaaaatcacaggtttacaagttgggtgaacatacaagggtgctagtaatctgtggtccaggaaataatggtggtgatggtctggtagctgctcgtcatcttcatcactttgggtacaagccttctgtatgttatccaaaacgcacgcccaagcctctgtattctggcctttgtactcaggtaaactgatatatcctgttccattttcttggcgtgccaaatgcttcctcttttccaatataattcgagccactcttttgtttcagcttgaatcactaacaatccctttcgttcctgttgaagacctacctgcaaatttatcggaggagtttgacatcattattgatgcaatgtttggtttttcgtttcatggtatgtgcatgctatccaatatcttatcataatcatagtaattttgatgtgaagctggtactagggaactgatcagtgcctgctacttatatatttattccttatgaatattctgtatgatgtgatttgtaaagtaaggccatagattctctgttagactgtagtgtggtagtctctttatcaacaggaacttaggaatgaaacaagtgagaattgatgtagctcaactgtggtatgaataacagctgatgtcatgtaatatattactagttcttttgtcgcaaattgtatttgagactttgttaaatatactgtatcgatcttgttatatgtcaagttttttttttcttttgataatgggacaattgacagatttgtatgagtgaacaactaaggcatagtttactgcactgttttactaaagcaagaatgatttgtgcattaagataatgctgccaatgctatcatttggattaaattggattggattgagcccagatcccagagttagcccccattgcatttgcaacgcaggaatttataggattaattcacaagaatcatttcatgtaccacatgaattgagaaaaggccttaagttccaaaagggttttcagtgagtctgttcctgagctcagtgatgctttcatttattttagcttttttttttcttttgggaaatatcaatgcaggaacaccaagaccaccatttgatgatcttatcaacaggcttgtttcactgagtgctattgataattctgctaaaagaccagcaattgtttctgttgatatcccttcggggtggcacgttgaagagggagatatcaatggaggagggtttaaacctgatatgctggttagcaacttagcatccttttcagaagctttctggatttgaatcaatatagtagtataagatattgctgtttgaacatgcaaatttcatttgtaatgcgatttatggtgtgcctaggtatcattgactgcaccaaagctctgtgcaaaaaaatttaccggtccacaccattttcttgggggtagatttgttcccccacctattgtgagcaaatataagcttcatcttcctccatatcccggtacctcaatgtgtgtgagaattggaaaagctccatctgttgacatttcatctctaagagaaaattacatctcccctgaacttctcgagaatcaggtgatgcctgatccatttgatcaggtactatcaaactgaaagaattttgaatttattcatcttatacattagtaaagtattgttcttctgaatgggatgaatgttttatttgatttgcttgtagttcgttagatggtttgatgaagctgttactgctggtctacgtgaaccaaatgctatggctttaacaactgccgataaggagggaaaaccgtatgcctccttttcgttaaatgttcctttcagatcagcaagctagtttcccctctttatgtcagaatgataattttagtggacatctgtgtgcagttcgtcaagaatggttcttttaaagggtgttgataagcagggatttgtttggtaaatacaagtgattacttaaacaatttctcgctgttagtccaagtttctctggaactactgacttgtgattctgctgggccttgtacaggtatacaaattatggtagccagaaggcacatgatttatctgagaatccaaatgccgctctgcttttctactggaatgagatgaaccggcaggtgattttaccaatcctatgctaaattgtgttatctgtagtactatctaatagcaagaggattaaacacctttccaacatgtaatacaaaacaaattcactagcgtaatcaatgaccgtcaacagaatgttgctctttgtattctgcagtttttgctatttttgtatcttgccatgtcaatttattgttctgcaatcaacaatcatttgactaggttttaagtttctgttccatctgatttgtagcatcaattattgaacactgtgtattcatttgttaagtaatatgcaatgagccgtgtttcaaaccagggcaaagaaaataccatgttgctttatattgcaaactcgattcagctgatgcctggtatttattgtcatgcaggtaagagtagaaggttctgttcagaaggttccagaagaagaatctgagaagtatttccacagccgcccacgagggagtcaacttggtgcaatagtcagcaagcaggtactgttattggcttattgctgtttagtacaaaaacttatggttcccacatgttttactcaaagatcaaatgaaagtataacatgcttcaaaatgaaatgaaaatcgataatacctatgctattttctagagcactatcattcctggaagggaagttcttcagcaggcgtacaaggaattggaacaaaagtattctgatgggtgagtttgacatgccagttatttccatacttggtattagtacattatttttctaattctattggacattggcatgaactattcactttggttatgtttttctcgggcagtttacttttgagttatcaaattacttcagaatttaagtcatatggtacttttgactactttcaccatacagtagcctgaagttcaataaaaatgagctcctggcattgataaacccagatttatggatagtaaccattaaaatcaaggtgctgatagttatttgtaaccatgaacctatcaagcatcataaccataaagtagccatacggtttctgcactttcctgttgttgtcctttgtcacattggatatacaaagtttgtgatggaatgatcctcctgttggaaacttggagctgcagcacattgtttttgtccctctctgtatagagtggaaaactggaaagggaaggaaagcaaattaattgaaagtggaatttcttgaagtctcgaccaccagtgttttgttatttattggtgtatagtttctatgattacgataccgatgcatatcaaaacacttacataggaagtttaagtagggtagctactaagtcctgaatctttgctatgtattttacgaagtcttcatataattgcccctgtgtcgttgatctgcagcagcgtgatcccaaaacctgattactggggtgggtacagattaacaccaaaactttttgagttctggcaaggccaacagtctcgactgcatgaccggtatgtttcatacagccattatatttttctctcttatttatttagacaacatagctattaactcgtaatatcttgatgcaaacaggcttcagtattcactgcgagaagtagataggagcacagtatggcacatcgagaggttgtccccttgactagtaaccccatcccagctctttggtaataaaaaggatctcatcttattatcaagaatcaaatcttatcccagctgcaaggagtcccaattgctcgatgatgttagtgccatgattaggtcgcgtgtttgagactgtgagtgcctgaagctctgctttttgacatgcccttcacacatctgatgttctctgaagcacagagtggatgaatccatgaaggcccttctcttggtcataagatttttctgtaaatgccattaaattttaaccgtcctgtagaaagaattatgatgagaatctcattatctcagcctggagaagactgttggacataggtcgacatcgtagtatatcgaagaaataatgttctgggaggaaataagtatttatcagcatcaagcatataag</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0377800, RefSeq:Os10g0377800