Os10g0415200

From RiceWiki
Revision as of 21:08, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0415200

Description

Exocyst complex subunit Sec15-like family protein

Version

NM_001071134.1 GI:115482011 GeneID:4348622

Length

3388 bp

Definition

Oryza sativa Japonica Group Os10g0415200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:14958021..14961408

Sequence Coding Region

14958347..14960716

Expression

GEO Profiles:Os10g0415200

Genome Context

<gbrowseImage1> name=NC_008403:14958021..14961408 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:14958021..14961408 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgactgctcagaccaagaagaggggtggcggggagagcgggaacggtggcgctggcttgggccttgctgccttcatcgccaacggcgaggatctgggccctatcgtccgccacgcgttcgagtccgggaagcccgagtccctcctgcaaggcctcaggagcatcgtgaaaatgaaggaggttgagattgaggagctctgtagggtccactacgaggagttcatccttgcagtcgatgagctccgcggcgtgttggttgacgccgatgagcttaagggtatgctgtccggcgaaaacctgcgcctgcaagaggttgctagctccctgctgttgaagcttgatgagcttcttgagttgtattcagtgaataagaatgttgaggaagccctagggatgttgaagatctgtttgcaagtcaccagtctgtgccagatgtgcaacaaggacattgcagaagccaggcttcattctgctttgaaaagtttggagttgattgagaaggattttctgcaaaatattcctctaaagcttctaaaaaaggctgttcagaagcaaataccaattgtcaagctgtacattgagaagaaagtttgcaatgagtttaatgagtggctggtgtatatcagaaggacagcaaaggaaattggtaaggtttcgataagccaggcatccttggctcgtcagaaaaatgagggaatacattcccaacagagggaagcagaggactgcagccgtattgggtttgacgagcatgcttatgccttggatttggatctcataggtgaggaggaagtactggaattcgatcttacaccagtataccgagcaaactacattcacacatgccttggtcttggggaaaaattccgagaatactactacaataacaggcttatgcaacttaatttggacctgcaaattcccacgacacaaccgttcatggagtctcatcagcacttccttgctcagatagctgggttctttattgttgaggaccgtgtccttcgaactgcagatgggcttctttctgatagtcaggttgagacaatgtgggggacagctatttctaaggtcacatctatcttagaggaacagttctctcgcatggatgctgccaaccacctcctactcgtaaaagactatgtcactcttctgggtgcaaccatgaagaagtatggataccaaaccacatcattgcttgaaattcttgagaagaatagggacaaattctatcaacttcttctttctgattgccggaaaaagatagatggcatcttcactaaggactcatatgagcagatgatcattaagaaggaaaatgagtaccacatgaatgtttcagcatttcaacttgaacccattggtgtagttccggattttccatatgttgcaccattttcctcttcagttccagatgcttgccttatcgtgcgctcttttattgatgattctgtgaactacttgtcatatgatcctatgatggacgcctatgatgtggtgaaaagatacctagacaagctcttgattgaggtactaaatgatggccttctgaatttgatacatggtggttgtttggagattacacaaatggtgcagattgcaggaaatattgccattcttgagaagtcctgtgacatgttcctctttcatgctgcccaactttgtggtgttcctaggcgtcttcttgacaagcctcattccggtttgactgctagagctgtgctcaaagcctctcaaaatgcagcgtacaatgggttaatagccttggccaattccaagattgacgaatttatgttgcttttgactagcatcaattggacaccagaggaaactccagaacatgtgaatgactacatgaatgaggtcgtcatctatcttcacacgttagtgtcaactgcacagaatgtttttccaagggaagccctgtacaaggtggtttgtggggcattcagccacatctcggactcgataatgacagtttttcttagtgatcgggtgaaaaggttcaatgctaatgctgccgcaggtattgacattgacctgaaaaagttagaggaatttgcagatgataaattccacagcactgggttgtcagagctgagaaaagaaacaactttcagagattgcctggtcgaaattaggcagctcaccgatcttctgctcagcaaccagccagagaacttcatgaaccctgtaatcagggagaagaattttggatccttggatcataagaaggtgtctatcatctgtgacaagtttagagatgctccggaaagcttatttgggagcctttcaggccgaagtacagtgcaaagtgctcgaaagaagtccttggatgtgttgaagagaaggctgaaggattttagctga</cdnaseq>

Protein Sequence

<aaseq>MTAQTKKRGGGESGNGGAGLGLAAFIANGEDLGPIVRHAFESGK PESLLQGLRSIVKMKEVEIEELCRVHYEEFILAVDELRGVLVDADELKGMLSGENLRL QEVASSLLLKLDELLELYSVNKNVEEALGMLKICLQVTSLCQMCNKDIAEARLHSALK SLELIEKDFLQNIPLKLLKKAVQKQIPIVKLYIEKKVCNEFNEWLVYIRRTAKEIGKV SISQASLARQKNEGIHSQQREAEDCSRIGFDEHAYALDLDLIGEEEVLEFDLTPVYRA NYIHTCLGLGEKFREYYYNNRLMQLNLDLQIPTTQPFMESHQHFLAQIAGFFIVEDRV LRTADGLLSDSQVETMWGTAISKVTSILEEQFSRMDAANHLLLVKDYVTLLGATMKKY GYQTTSLLEILEKNRDKFYQLLLSDCRKKIDGIFTKDSYEQMIIKKENEYHMNVSAFQ LEPIGVVPDFPYVAPFSSSVPDACLIVRSFIDDSVNYLSYDPMMDAYDVVKRYLDKLL IEVLNDGLLNLIHGGCLEITQMVQIAGNIAILEKSCDMFLFHAAQLCGVPRRLLDKPH SGLTARAVLKASQNAAYNGLIALANSKIDEFMLLLTSINWTPEETPEHVNDYMNEVVI YLHTLVSTAQNVFPREALYKVVCGAFSHISDSIMTVFLSDRVKRFNANAAAGIDIDLK KLEEFADDKFHSTGLSELRKETTFRDCLVEIRQLTDLLLSNQPENFMNPVIREKNFGS LDHKKVSIICDKFRDAPESLFGSLSGRSTVQSARKKSLDVLKRRLKDFS</aaseq>

Gene Sequence

<dnaseqindica>693..3062#tcttctctctctctctccgccggcggaggcagaggcaccgccggcattctcccccgcaagccccgcctcgcctcctccccctccccgccgcgcgccgccggcgagctgcccctgaggcacacggcgtgtgcggcctcctcctcctccccttctcccccacccctgcgcggcctcctcgcgcgcacggccggcgcagcaaggtccggagacgcgacgcggccggcctcattccactcgcctccatccccggctcgaatcgaacccccaaggtactcgttcttctcccgtagcactctctcccttcctccctccccgccgcttcatgagccgtcgtggcgtggatttggaaatccatcccgacctggattgactactttgcctccaattaacccattcagtttcttccgtatttcttagtataatagtagttttttttttgaaaaaatgctgaacccccacgccccacgttaggtcggtttattttaacaaatttggtggtttacacttcaacgcttgtgctaatttcttggcttgctaattaattttcactaattattactgcgttcttcatatgctaatcatttgtagcactctaaatttagggggtacccgatttcttaaggtggacgcatgtcttactgtgtgcagcatgccatttttttttttgtgtgtgtgtgttttgcagttgaacaatgactgctcagaccaagaagaggggtggcggggagagcgggaacggtggcgctggcttgggccttgctgccttcatcgccaacggcgaggatctgggccctatcgtccgccacgcgttcgagtccgggaagcccgagtccctcctgcaaggcctcaggagcatcgtgaaaatgaaggaggttgagattgaggagctctgtagggtccactacgaggagttcatccttgcagtcgatgagctccgcggcgtgttggttgacgccgatgagcttaagggtatgctgtccggcgaaaacctgcgcctgcaagaggttgctagctccctgctgttgaagcttgatgagcttcttgagttgtattcagtgaataagaatgttgaggaagccctagggatgttgaagatctgtttgcaagtcaccagtctgtgccagatgtgcaacaaggacattgcagaagccaggcttcattctgctttgaaaagtttggagttgattgagaaggattttctgcaaaatattcctctaaagcttctaaaaaaggctgttcagaagcaaataccaattgtcaagctgtacattgagaagaaagtttgcaatgagtttaatgagtggctggtgtatatcagaaggacagcaaaggaaattggtaaggtttcgataagccaggcatccttggctcgtcagaaaaatgagggaatacattcccaacagagggaagcagaggactgcagccgtattgggtttgacgagcatgcttatgccttggatttggatctcataggtgaggaggaagtactggaattcgatcttacaccagtataccgagcaaactacattcacacatgccttggtcttggggaaaaattccgagaatactactacaataacaggcttatgcaacttaatttggacctgcaaattcccacgacacaaccgttcatggagtctcatcagcacttccttgctcagatagctgggttctttattgttgaggaccgtgtccttcgaactgcagatgggcttctttctgatagtcaggttgagacaatgtgggggacagctatttctaaggtcacatctatcttagaggaacagttctctcgcatggatgctgccaaccacctcctactcgtaaaagactatgtcactcttctgggtgcaaccatgaagaagtatggataccaaaccacatcattgcttgaaattcttgagaagaatagggacaaattctatcaacttcttctttctgattgccggaaaaagatagatggcatcttcactaaggactcatatgagcagatgatcattaagaaggaaaatgagtaccacatgaatgtttcagcatttcaacttgaacccattggtgtagttccggattttccatatgttgcaccattttcctcttcagttccagatgcttgccttatcgtgcgctcttttattgatgattctgtgaactacttgtcatatgatcctatgatggacgcctatgatgtggtgaaaagatacctagacaagctcttgattgaggtactaaatgatggccttctgaatttgatacatggtggttgtttggagattacacaaatggtgcagattgcaggaaatattgccattcttgagaagtcctgtgacatgttcctctttcatgctgcccaactttgtggtgttcctaggcgtcttcttgacaagcctcattccggtttgactgctagagctgtgctcaaagcctctcaaaatgcagcgtacaatgggttaatagccttggccaattccaagattgacgaatttatgttgcttttgactagcatcaattggacaccagaggaaactccagaacatgtgaatgactacatgaatgaggtcgtcatctatcttcacacgttagtgtcaactgcacagaatgtttttccaagggaagccctgtacaaggtggtttgtggggcattcagccacatctcggactcgataatgacagtttttcttagtgatcgggtgaaaaggttcaatgctaatgctgccgcaggtattgacattgacctgaaaaagttagaggaatttgcagatgataaattccacagcactgggttgtcagagctgagaaaagaaacaactttcagagattgcctggtcgaaattaggcagctcaccgatcttctgctcagcaaccagccagagaacttcatgaaccctgtaatcagggagaagaattttggatccttggatcataagaaggtgtctatcatctgtgacaagtttagagatgctccggaaagcttatttgggagcctttcaggccgaagtacagtgcaaagtgctcgaaagaagtccttggatgtgttgaagagaaggctgaaggattttagctgagcttagccatgttgcatcagaaaataagttagtgctcccttgaaaagactgctgccaagtggtggttagcctttttaagtttcttttaccccttgtaacctccgtagttcggcaactctatatggaatttatgtagctgtcatggtttgtataggtcaattttgactgttattatgggcagcacttgcattctctcttcaaattatgaacttcgatggcactagtatactaaatcactgagagaatcaggcctaagaatttgatctcctgaatagttaagttctcttgtttaagatgtaatccgtctatagcatctattttgtttt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0415200, RefSeq:Os10g0415200