Os10g0436900

From RiceWiki
Revision as of 21:09, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0436900

Description

Sodium/calcium exchanger membrane region domain containing protein

Version

NM_001071208.1 GI:115482159 GeneID:4348706

Length

1894 bp

Definition

Oryza sativa Japonica Group Os10g0436900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:16071420..16073313

Sequence Coding Region

16071427..16073220

Expression

GEO Profiles:Os10g0436900

Genome Context

<gbrowseImage1> name=NC_008403:16071420..16073313 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:16071420..16073313 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaaagccttctgccacgtcggcggcggcggcgccgccggcggcgagggtgctgatcggtgccagcgtcaacgtggccttcttgctcctgctcgccttcttcttcttcatctcgccacgcggcggctcgccgccggaggtggtttcgtcgtcgaaggaggtcgggatccgggggcgtcgcgatggcggcggcagcggcggcggcggcgtgttccgggttgagagctacggggagaggtgcgagcacgtcggcgaggaggatggccttgatcgccggcgattcccgcgtggctacgtcgactacctgtacctgttcgactgcgtgttcggcgaggagcggcgggttcttggctacgccgtgatggcggcgtggctcgccgtgctgttctacctgctcggcgacacggcggcggtgtacttctgctccagcctcgagggcctctcgcggctgctccgcctctccccggcgatcgccggcgtgacgctcctgtcgctcgggaacggcgcgcccgacgcgctctccaccatcgcgtcgttcgcctccggcgggggagagggggagaccaccgccgtggggctcaacggcgtgctggggagcgcgatgctcgtgtcctccgcggtgctcggcgtcatcggcgtccgcctcggcgcgcgcggggtcgccgtggacagggtggacttctaccgcgacgcgtctttcctcctcgccgccctcgccgccgtggccgtcgtcctcgccgccggcgaggtgacaatctggggcgccctcgccttcacctccctctacgtcgtctacgtcgtcgccgtcgccttcacccacggccgcgccccgagcaaaggccacggcgcggaggcggaccacacggcggacgccttctccgagctctgcaacgtcgcagagacgaagttctacggcgaccaagaaccactcctccccgacactgcaccgctactcagctactaccccggcgacggcgacggcgacggaggcggcggcggcggcggctccaagaagaagatcaggagcgcgttctggtcggtgttgcgcgcgctggagctcccactatggcttccacggcggctgaccatcccggacgcgagcaaggagcggtggagcaagccggcggcggtgaccgcggtcaccatggcgcccgtcctcctctcccacctctgcagccgcgccaccggcatcacctcgcccctcgctgtcctcctcggcgtcctcgccggcgcgtccctcggcgccgtcgccttcttcaccacctccccggacgcgcccccagccgaccacctcgccgcctggctcgccgccgggttcgtcatgagcgtggcctgggcgtacgccgtggcgaccgagctcctcgcgctgctggtctccgcggcgcacgtcatgggcgtcgactcggcggcgctggggctcaccgtgctcgcgtgggggaactccctgggcgacctcgtcgccaacctcgccgtggcgtcgcgcggcggcggcggcgggggcgcgcaggtggccgtggccgggtgctacggcgggccggtgttcgacgtgctcgtgggcctcggcgtgtcgatgttgctgtcgtcgtgggcctcgcatccgcggcccgtggcaatgccggcggaggccggcccattccagacgctgggcttcgccgccgcggggatttgctgggccgtggtggtgatgtccaggagagggatgagggtggacagaacgctggggtttgggctcctggccatttacttgtgctttctttgcatcaacatttctcaggcacttggaccggtatga</cdnaseq>

Protein Sequence

<aaseq>MAKPSATSAAAAPPAARVLIGASVNVAFLLLLAFFFFISPRGGS PPEVVSSSKEVGIRGRRDGGGSGGGGVFRVESYGERCEHVGEEDGLDRRRFPRGYVDY LYLFDCVFGEERRVLGYAVMAAWLAVLFYLLGDTAAVYFCSSLEGLSRLLRLSPAIAG VTLLSLGNGAPDALSTIASFASGGGEGETTAVGLNGVLGSAMLVSSAVLGVIGVRLGA RGVAVDRVDFYRDASFLLAALAAVAVVLAAGEVTIWGALAFTSLYVVYVVAVAFTHGR APSKGHGAEADHTADAFSELCNVAETKFYGDQEPLLPDTAPLLSYYPGDGDGDGGGGG GGSKKKIRSAFWSVLRALELPLWLPRRLTIPDASKERWSKPAAVTAVTMAPVLLSHLC SRATGITSPLAVLLGVLAGASLGAVAFFTTSPDAPPADHLAAWLAAGFVMSVAWAYAV ATELLALLVSAAHVMGVDSAALGLTVLAWGNSLGDLVANLAVASRGGGGGGAQVAVAG CYGGPVFDVLVGLGVSMLLSSWASHPRPVAMPAEAGPFQTLGFAAAGICWAVVVMSRR GMRVDRTLGFGLLAIYLCFLCINISQALGPV</aaseq>

Gene Sequence

<dnaseqindica>8..1801#attatgcatggcaaagccttctgccacgtcggcggcggcggcgccgccggcggcgagggtgctgatcggtgccagcgtcaacgtggccttcttgctcctgctcgccttcttcttcttcatctcgccacgcggcggctcgccgccggaggtggtttcgtcgtcgaaggaggtcgggatccgggggcgtcgcgatggcggcggcagcggcggcggcggcgtgttccgggttgagagctacggggagaggtgcgagcacgtcggcgaggaggatggccttgatcgccggcgattcccgcgtggctacgtcgactacctgtacctgttcgactgcgtgttcggcgaggagcggcgggttcttggctacgccgtgatggcggcgtggctcgccgtgctgttctacctgctcggcgacacggcggcggtgtacttctgctccagcctcgagggcctctcgcggctgctccgcctctccccggcgatcgccggcgtgacgctcctgtcgctcgggaacggcgcgcccgacgcgctctccaccatcgcgtcgttcgcctccggcgggggagagggggagaccaccgccgtggggctcaacggcgtgctggggagcgcgatgctcgtgtcctccgcggtgctcggcgtcatcggcgtccgcctcggcgcgcgcggggtcgccgtggacagggtggacttctaccgcgacgcgtctttcctcctcgccgccctcgccgccgtggccgtcgtcctcgccgccggcgaggtgacaatctggggcgccctcgccttcacctccctctacgtcgtctacgtcgtcgccgtcgccttcacccacggccgcgccccgagcaaaggccacggcgcggaggcggaccacacggcggacgccttctccgagctctgcaacgtcgcagagacgaagttctacggcgaccaagaaccactcctccccgacactgcaccgctactcagctactaccccggcgacggcgacggcgacggaggcggcggcggcggcggctccaagaagaagatcaggagcgcgttctggtcggtgttgcgcgcgctggagctcccactatggcttccacggcggctgaccatcccggacgcgagcaaggagcggtggagcaagccggcggcggtgaccgcggtcaccatggcgcccgtcctcctctcccacctctgcagccgcgccaccggcatcacctcgcccctcgctgtcctcctcggcgtcctcgccggcgcgtccctcggcgccgtcgccttcttcaccacctccccggacgcgcccccagccgaccacctcgccgcctggctcgccgccgggttcgtcatgagcgtggcctgggcgtacgccgtggcgaccgagctcctcgcgctgctggtctccgcggcgcacgtcatgggcgtcgactcggcggcgctggggctcaccgtgctcgcgtgggggaactccctgggcgacctcgtcgccaacctcgccgtggcgtcgcgcggcggcggcggcgggggcgcgcaggtggccgtggccgggtgctacggcgggccggtgttcgacgtgctcgtgggcctcggcgtgtcgatgttgctgtcgtcgtgggcctcgcatccgcggcccgtggcaatgccggcggaggccggcccattccagacgctgggcttcgccgccgcggggatttgctgggccgtggtggtgatgtccaggagagggatgagggtggacagaacgctggggtttgggctcctggccatttacttgtgctttctttgcatcaacatttctcaggcacttggaccggtatgaactttttttattttttttattcttttcataaggggcccggttggccaccattttgtgttggcccctccgcgcattgcaacgaaaattttaagg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0436900, RefSeq:Os10g0436900