Os05g0513200

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Revision as of 10:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0513200| Description = NLI interacting factor domain containing protein| Version = NM_001062560.2 GI:297604740 GeneID:4339299| Length = 507...")
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Gene Name

Os05g0513200

Description

NLI interacting factor domain containing protein

Version

NM_001062560.2 GI:297604740 GeneID:4339299

Length

5077 bp

Definition

Oryza sativa Japonica Group Os05g0513200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25508178..25513254

Sequence Coding Region

25508178..25508460,25508594..25508688,25509140..25509176,25509705..25509766,25509852..25509965
,25510795..25510899,25510988..25511086,25511750..25511906,25512020..25512122
,25513209..25513254

Expression

GEO Profiles:Os05g0513200

Genome Context

<gbrowseImage1> name=NC_008398:25508178..25513254 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25508178..25513254 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggccgtgacccgcgcggcgagatcgcgcgccctcctcctcctcccccgcgcctccgccgccgctccccacttctccaccaccgcttcctccggggcggctgcggcggcggcggcgccggtagaggctgcggctgcgggggcgtccgacgcctcggccgctgccgcggctggcgcgggggagcagccggcgccgccgccgaagcggtggggcctgctgaagtttggcgccttcgcggcggtgtgcggggctctcggcgccgccgggtactccagctacgcttatacgcttgaggaggtggatcagaagacgcgggagttcaggaaggccatgactacgccgcgccccgttgcggaggacgcctctgaatttgagaagttccaggctatgatttactcgacggctatgaaagctcctgttgcagcaatagaattctacatggatgttagacacacaattgaggaccatattcggggctttgctgaacccacgtcagacaaactgctaccggatcttgatcctctaaatcagcatatcttcactctagttcttgatctgaatgaaacactcgtttactctgattggctgcgtgaaagaggatggaggacttttaagaggccaggagttgatgcttttatagaacacatggggaaattttatgaagttgttgtgtattctgatcagatgcctatgtatgttgatcctgtgcttgaaaggctggacacaaagggtttcatcacaggcaggttgtcaagacctgcaactaagtatcaagatggtaaacattatcgggatttgtcaaagttgaatagaaatcctgcacaagttatttacatcagcagccacgctcttgaatcttgcttacagccagaaaattgtgttcaaatcaaaccttggaaacttgaaactgatgacacccagctgctggatctgatcccatttctagagtatgttgccatggtgagaccttctgatattaggactgtgcttgcttcctatcaaggtcgtgatgttgctgcagagtttatcgagcgttcaaaggaacaccagaggcgtatgcaagagcaaaaacaacatgggcgtatatggagacaataa</cdnaseq>

Protein Sequence

<aaseq>MAAVTRAARSRALLLLPRASAAAPHFSTTASSGAAAAAAAPVEA AAAGASDASAAAAAGAGEQPAPPPKRWGLLKFGAFAAVCGALGAAGYSSYAYTLEEVD QKTREFRKAMTTPRPVAEDASEFEKFQAMIYSTAMKAPVAAIEFYMDVRHTIEDHIRG FAEPTSDKLLPDLDPLNQHIFTLVLDLNETLVYSDWLRERGWRTFKRPGVDAFIEHMG KFYEVVVYSDQMPMYVDPVLERLDTKGFITGRLSRPATKYQDGKHYRDLSKLNRNPAQ VIYISSHALESCLQPENCVQIKPWKLETDDTQLLDLIPFLEYVAMVRPSDIRTVLASY QGRDVAAEFIERSKEHQRRMQEQKQHGRIWRQ</aaseq>

Gene Sequence

<dnaseqindica>1..283#417..511#963..999#1528..1589#1675..1788#2618..2722#2811..2909#3573..3729#3843..3945#5032..5077#atggcggccgtgacccgcgcggcgagatcgcgcgccctcctcctcctcccccgcgcctccgccgccgctccccacttctccaccaccgcttcctccggggcggctgcggcggcggcggcgccggtagaggctgcggctgcgggggcgtccgacgcctcggccgctgccgcggctggcgcgggggagcagccggcgccgccgccgaagcggtggggcctgctgaagtttggcgccttcgcggcggtgtgcggggctctcggcgccgccgggtactccagctacggtatgatcccgcggtatcccgtcgcgatctcgcgcgaggagggagggtgttctgttttgggcgttttttggtttgagcatgtggcgcgtttgacttgtagtgctgtgtgtgtctccgtctcgtttgcgtgcagcttatacgcttgaggaggtggatcagaagacgcgggagttcaggaaggccatgactacgccgcgccccgttgcggaggacgcctctgaatttgaggtagtgtcatcttaagatattcggggtaccaactccatgtataaaggagtgatggttgcttattaatcctatgatgcgatattgtaactttgtaagagtgtaacaccggggtatgggaaggagggttctattggcacctgagctgggaatttaagtattttaccctgaatatattattgtcagctcagtttgttgtaatgcatgaaagtaatatatcaaaagtaaggtcccgaagcaattgctaattttagtgttcttatgccttcactaaaactttgcacaaatgataatgttaagatggatttgttatgaaatagaaacatgcagtgaaaagtgattgcctcttcgttggtttagatcaagagcaagaactgttctctgcagcaaataggttcaatttgagtgtggactatgtctaatacttaatgattgtggtctttcttgtgtgcagaagttccaggctatgatttactcgacggctatgaaaggtacattacatgacatactccttttttattattctggtgtccttaggaattaccactgcacagggcacactttcagagcatttgattgaagggtgatacaattattcactattaagctgtatcaatacattgcatgtatgctactgtaggtagtcagtgattacagaattgccctcagtgaatgcaatggaagaacaatggaaatgctgttgaatggttacaatacataatgtgttcattgtaggtcatatcctttgtggcagtatgtaatcctgctctcctgaaactgggagtgcataataagttccttaatatatagatttgtttaaatccttataaaaataatcaccaaatgatccttttagcttttaggcgtttacctaattgctttatacatattattattctaagcttgaacatatttatgctccagattatttgttgaattcaatcttagtttgttgattgcattttttttttctgtttggcaccttcttaatattgatgttagacattttgttattgtagctcctgttgcagcaatagaattctacatggatgttagacacacaattgaggaccatattcgggttagttacaaatcataagcttctcaatgttctttataaatgtttccagtaaatatttacaactgactagctatgtctgtttcagggctttgctgaacccacgtcagacaaactgctaccggatcttgatcctctaaatcagcatatcttcactctagttcttgatctgaatgaaacactcgtttactctgattggctggtatagtgaagaagataattcagtccttttgtttattgtgaaaaatccgttttgagtgatatgatctaagcattggacctgatgtagaaataacttatgttattttagtccagacagtgattcttaatcccaccatacaggcacacaggaaaaaatatattctaataagaaattgagataagactgttggatgaattggagaacgaagtttgttctacttatcagatataatatgctatgaaactcagtggggtcgatagtgttaggcaaagtgtggtatggaaatcagtattgcatgttgcacatgataatttaccacaaacatggtcaagttgaagtggaatttggttcgctttaccctgctatataatttttattacagcataatatttatccaccatctgacactgtctaacaaatgagttattatacacactatatgaaaactgacagttttgccatatgttaattacatattatacctttttgtattttcttcatttccattaacacgttattttcatctttccaacgtgttaggaagatgtgcattgtattattcataatgaaacaaatatgttgtgttaccagaaattggttctctgcttagctgtttcattgtttgtactttggagtggagcttcctcaccagattctccacttccttgaaataacacaatggaacgagtgttgacatcaattagaatcatgtccatgtgttttcatggtctccttttgaaggcccatgcttaaactgctttgctatttcttgtatgtttttactgtgttatccagaaatgtcataatagtattgtttcttcttgtacagcgtgaaagaggatggaggacttttaagaggccaggagttgatgcttttatagaacacatggggaaattttatgaagttgttgtgtattctgatcagatgcctatggtaagttgatcttaactgtctttgaatgttttgtgttttagggtgttatgccatactgattttccataatataattttatatgtgcagtatgttgatcctgtgcttgaaaggctggacacaaagggtttcatcacaggcaggttgtcaagacctgcaactaagtatcaagatggtaaacattatcgggtaaggatactgggtggatgattgacttatggctctcaacaatgaagtgcattccttgatgattgtctagagagccccacctgaatagtgtatcatacattttatatttttattcatcatcccatctccattctatcatcttttttgcagtttatgtactccaaaataagcacgtagagtctcccgaaatccctagttaaagtgagggactctgccatcaaagcatgtaaatgagcatcagcatagcagtatcatcttagcaatctttatattgtaaatgaatactagtgtcttgattatagaaaacctttctatgtgtggcgcatacttgtttgctgctttaaatatttcagtctttgggatattgttgctgatggttggttctgcaccccatccttccccattgcctaatcatgtcaaatgtgccttcatcctctgcatggctcctgaactgctggttcctcacctaaccaacattatagcttatattcaatatgctatgtataaagataattattctgtttcagcacatgtacaccctgtagtcttttctaagaaaaatgttacaacacatctaactaaggcatggtgtagtgtcaacttccgtttcgtactgtttggtgctttaccttttaatatattttttttatcatgttttaccaggatttgtcaaagttgaatagaaatcctgcacaagttatttacatcagcagccacgctcttgaatcttgcttacagccagaaaattgtgttcaaatcaaaccttggaaacttgaaactgatgacacccagctgctggatctgatcccatttctagagtgtaagtgttcctatccttctcctgtgatatactagcatgttgttttaggttcttcttttgttgtacaatggaatcaagtgcttaaatgttgacaaagccaacatgtactgcagatgttgccatggtgagaccttctgatattaggactgtgcttgcttcctatcaaggtcgtgatgttgctgcagagtttatcgagcgttcaaaggaacaccagaggtaagatcatgtttctctccatggtaacagaagatgcctgtaactgtgaatatatatgcatgacttctttacgagtaattatgaaagtaatatgcagtattcattgtagttcactaacttacggatgtacctcatgtgtggtacatgttgtggggtgacaaggcacatttttagtcgacattaaacattcttggtagaaataaattgtaactagtacaataaatcttatgattcccagcttccacaaggaaaatttcccttccatatggtaaggcttaaagagtactccctccttttgggattataagtcgtttcaaagtcaaactgctctaagtttgaccatgtttgtagaaaaaagtcgtaacatattcaacacaaggcaaatatactatataaaagtatagtcaatgaaactaatttggcgttgtaaatattactcctatatttgacggtcaaacttagagtagtttgattttgactacgacttataatctgaaacggagatagtatatattacttgttgtggttgactaacctgggcttagatttagtcctgcctttacatagcctgatgtatagtgttttcacgttgtaccagtaaaggttacactcaaagaacgaaagtggaatcatgctatggacatactgacattgaaaatttgttaggaattttgtaaaacctaaatttagttgtaaaagggagaaaatggtgttccatggaccatatgtactggttgagtctaggcatgaccactatcaaatgtgcaccaatattctttagttggctattctatcgtctattaattgtcgtgacttgcacatttcttgaagtgttatggattactaggattcggatgtacctacatagctacatgtacatacatgtggatgtggtttcgtattttccgaagtaatgcatgtataaaaaaggatccccagtaatgcataagtagcgaacctttgaggacttctacagcttattgggatacttgtttgaagctacaacaatttacttaaagagattagagtagttatttgatacaaaacttgtttcttgtaaatgaccattatcttgccatcttacaggcgtatgcaagagcaaaaacaacatgggcgtatatggagacaataa</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0513200, RefSeq:Os05g0513200