Os05g0515400

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Revision as of 10:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0515400| Description = Transcriptional factor B3 family protein| Version = NM_001062573.1 GI:115464876 GeneID:4339313| Length = 5942 bp| D...")
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Gene Name

Os05g0515400

Description

Transcriptional factor B3 family protein

Version

NM_001062573.1 GI:115464876 GeneID:4339313

Length

5942 bp

Definition

Oryza sativa Japonica Group Os05g0515400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25617085..25623026

Sequence Coding Region

25618395..25618580,25618690..25618774,25619540..25619630,25619719..25619883,25620130..25620246
,25620320..25620395,25621487..25621649,25621731..25622611

Expression

GEO Profiles:Os05g0515400

Genome Context

<gbrowseImage1> name=NC_008398:25617085..25623026 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25617085..25623026 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttgcagcggaacttccgcgagggtggaggtgaagatggtgcaggggagatggagggttgtgatgcagaaaagaagccccggatgccacacatgttctgcaaaactctcacagcatctgatacaagcacccatggaggtttctctgttcctcgccgggctgcagaggactgtttcccacctttggactataagacagttagaccttctcaagagctgattgccgtggacttacatggcacacaatggaagttcaggcatatttatagaggccagcctcgtaggcatcttctaacgattggatggagctcatttgtcaataggaaaaaactagtctcaggggatgctgtcttgtttcttagaggtgatgatggccaactaagattgggtgtaaggagagcagttcaacttagaaatgaggccctctttgaacctgtcaacagcagcgattcaaagctacgcattctatcttctgttgccagttccttggaaaataaaagtgttttccacatttgtttcaacccaaggagtggtgcgtcagaattcattgtaccgtattggagattattgaagagcctgaaccatccattttccattggaatgaggttcagagtttgctatgagagtgaagatgctaatgagaggtccgctggattaatttcaggcattagtgaagttgaccccataagatggcctggatcaagatggaaatgcctactggtaagatgggatgatagtacagatagcagccaccaaaacagagtttctccatgggagatcgagagagttggtggcagtgtctcggttacccattccttgtcatctgggtctaagcgaaccaaattgcactttcctcaaggcagtttggatactccatttcttaatggaaatggtcacccggactccatgggaactgaaaatttccacagggtcttgcaaggtcaagaatttaggggttctaggtcccatggtgttgtatgctctgaatcacctggtgtaccaaactttcaatctcctgacaataggagattttctgctgatatgcggggctacatgatgccagcaagtgggcccccacagcggaacacagagtttacttatcagcccataggcttcagtgagtctcttggattcccagaggtcttgcaaggtcaagaaatgtcacaagtagttcctttgttccgaggagctacttttggcgctcgtacacagaatgacagagttgtctctgctaattctgtgcatagatcagctgcacagagtggattgctagcttcaactctagggcatcccatctcgcagtttactctgtcatcgtcaaaggtatcttctccctcgtcggttctgatgtttaaccaagcgacagctccaaatcatgaaacagtaagcggaaccaacaacaaaggtatgcatgtcagccagtttgcttcccaggagatgctctcagaaactgtaacctggcccggcacacaacgtcaaacgccgagcgaaatcacgagcaaccagttcgccctggcgagaatcccagctcctccaagcggagctgaatccggattgcccaagagggatgccgggagaagcagctgcagactgtttggcttctccctgacaggcaacatgctgggagaagatggagaaggcctagatgatggagccattgaagctggttgcgaaaacccgcccgtgctggagctgtttgggcacagccattctactcccggtgctcttcatgccctgtgtgctgctgctcccctgggaatgtga</cdnaseq>

Protein Sequence

<aaseq>MLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTST HGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGW SSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVA SSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERSAG LISGISEVDPIRWPGSRWKCLLVRWDDSTDSSHQNRVSPWEIERVGGSVSVTHSLSSG SKRTKLHFPQGSLDTPFLNGNGHPDSMGTENFHRVLQGQEFRGSRSHGVVCSESPGVP NFQSPDNRRFSADMRGYMMPASGPPQRNTEFTYQPIGFSESLGFPEVLQGQEMSQVVP LFRGATFGARTQNDRVVSANSVHRSAAQSGLLASTLGHPISQFTLSSSKVSSPSSVLM FNQATAPNHETVSGTNNKGMHVSQFASQEMLSETVTWPGTQRQTPSEITSNQFALARI PAPPSGAESGLPKRDAGRSSCRLFGFSLTGNMLGEDGEGLDDGAIEAGCENPPVLELF GHSHSTPGALHALCAAAPLGM</aaseq>

Gene Sequence

<dnaseqindica>1311..1496#1606..1690#2456..2546#2635..2799#3046..3162#3236..3311#4403..4565#4647..5527#ccttcctcctccctgtgcgggaacagtggctaccaaaagcggcagaagccgcggcaaggcaaggcccccggccccgccacgccacggtggtggagcccggagccccccctccttctccctcctcctctcgtcgcttccgccttggctcgtcttgtgcctacgcgagagccagagattgggggggaaggttgcattcattgatgccgccgcggcgccgctgctgcttttaacgcgctcgtcgtcggcgtcgtcggctgccctccaccgcaatcaaggccaatttggcgcgcggcgaggaggaggagggaggaggagatggggattgacctgaacacggtggaggaggaagcggaggagggggcggcggcggcggtgtgcggggagctgtggcacgcgtgcgcggggccaggggtggcgctgccgcggcgcggcagcgcgctcgtgtacctgccgcaggcgcacctcgccgcggacggcggcggcggcgaggtgccgcctgccggcgccgcggccgtgcccccgcacgtcgcgtgccgcgtcgtcggcgtcgagctgcgcgtgagtgatactgacctacctccggctcctcctcccctcgccgagaaagaagtagtattctgatggcgtctcgtggtgcgcgtgcaggcggacgcggcgacggacgaggtgtacgcgcggctcgcgttggtggcggagggcgaggtgagcaaatgcagcttggatttctcgcgccgtctctactttctcgcgcgatcgagttcagttctagagaatggggggagaagtggaagcagttaacttgtttactctttttggtagttgtctgattgagttgtagagagcgagaggcttgtgctgctcccgtttctaattgggggatcttggggttggagagtagtcagatagagactgttccattaaaattgtttccctgtttcattttacatttcgcattttggctttacattttggatacattgttaggacattggagacgtcacttgcttaggatgttgtacggtatatgaatgcagctctccttctatatcagtcagatttgatggctgttgaaacttgaaagtaaggaaaatttggatgcactggcaggacactggagacatatctttcttttgcacctagttgctttgcttaggatgttaatgtgttatacagtactagtatatggtgaatgcagctctccttctatattagtaagctttgatgtctccatggtctgtaggtgtgttgaaagcaagggaaatgtaattagatggtaagtgttcctaacactgttgttctattgaactcagatgttgcagcggaacttccgcgagggtggaggtgaagatggtgcaggggagatggagggttgtgatgcagaaaagaagccccggatgccacacatgttctgcaaaactctcacagcatctgatacaagcacccatggaggtttctctgttcctcgccgggctgcagaggactgtttcccacctttggtgatacacttaaaagaaaaacttgtaacttttaatgtaactgctaaaattctgatatagtcacttgcattgctgctctaaccagctgtagttcttcaattctttgtaggactataagacagttagaccttctcaagagctgattgccgtggacttacatggcacacaatggaagttcaggcatatttatagaggtgcacgattggaacacatttgttttagattttgtgctgttgtcttgtatacaatacacatgtccgctgtgtttacttggagaatttaaaccacaatagagaacttggtatgctcactgcttgtgcttgtttaaggccaaaaaggagggttcaaaaaagatgtctagtggtggtagatttggataggatggactaagaaggggctgcatttctaaagtagaaaactattgtagttgtgtctggatcatgaaggaaagttgccaatccaatatactaaaaggagaaatatttttttctattacttggtagtacggaatttggaacatgtgtgtccttctatgtttgctaatttgatagtatgaaatgaggaatctttctggacttggttgctgaagtgagctaagaatttgcaaaggcgttaaagcacttcgtagtattgaggactcattggattgattagaggctcaaagttaactagctaaggttaacataataagtaaggtggatgtaatttattgtgctggaggatcaggtttgtaatatggcgttttttacctattgctggccacgagtcttgaaaatctgtgtaaagcagtgtgaaatttatagatgatttaagcatcagcacaactaatttccttcttcagatgtgctaccacttttctggttttcactataaatctatgcattgcagcatttttcttctcatttacgtgaactctcagtttaattgtgacgtggaaaaaaaaacttcttgaatttcaggccagcctcgtaggcatcttctaacgattggatggagctcatttgtcaataggaaaaaactagtctcaggggatgctgtcttgtttcttaggtaagcatatcatctatctaagtgatgaagttaacttccttttgtcatttgtcctttttcataagcttcaattgttatttttatacagaggtgatgatggccaactaagattgggtgtaaggagagcagttcaacttagaaatgaggccctctttgaacctgtcaacagcagcgattcaaagctacgcattctatcttctgttgccagttccttggaaaataaaagtgttttccacatttgtttcaacccaaggtttgtgcagacaagtgcaaaatttcaagttccagttaatcactgttatgcttgcatggatagttaaaagtcataaaactcccttcacaattatgtaatcctttagggttgttctttttcttcctttacctgatcatatatggtagtatggtacatgaaacttatacaagaaaatgcctttttaatgtaactctggcatagcttgagtgacttgaaagtaatttcgggttttctattctcccacaggagtggtgcgtcagaattcattgtaccgtattggagattattgaagagcctgaaccatccattttccattggaatgaggttcagagtttgctatgagagtgaagatgctaatgagaggtctgcacttttaagtcaaccaaatggtattagtctatctcaaatctcatgaagttacatttttgctgtgcaggtccgctggattaatttcaggcattagtgaagttgaccccataagatggcctggatcaagatggaaatgcctactggtatgcatttgagattgagaatatcatacttgttttctgacttgagagttttagcttattcactgagtgctaagtttgaatttattattcgttttgaaagtcaattgttttaaaaagattcactgcttttctgatactttgttctgctttgattcactgctagcacctgctaagctctgtcaaatattagacgtttcaactcctggcaacgtctgtcagaagtaggggtgggcataaatctcccgaaaaccaaccaccgcactgaaccgaaccaaaccgaagtatctttttttgggtgttcagatgattgtggttattgttttgatctactttggtggtcggtctgttctccggtttccgcctgctgtgaacagaacgcactgaagaaacctgaagtcctcatgtgcgttgtcgtctaggcataactgcctccttgtttcgtgctatctgggaacatgagcgtgatgctccgttcttttgtggatggacggtggagcccatggccttcctgcgctgtgtgcaatgcgtgcatggcatgagcccacctcttgcttcatgtgattggtacttagagggaggaataatggaggcatatgtttcttcggtaaaaaacggtgccccgaaaaaaccaaatcaaatttgttcagtctttttccatcggtttttattttgtttgcacgttcttcggttgctattttacgaaaaccgaacattttgaaaaccgataaaaccgacccgattaaactggtgaaaccgaatgcccacccatagtcagaagtaagatggatctaagaatcgcaaaatcattcattttatgactgctcaaatctcgagtatgcaagtaagatccttttcccgaagtaacatgtggagaagagttgccaatggccaaacctgtatcttatttgttacgtacacttttagagtctaaaatggaaaatgacacatagtcaaagtttccttctgttttgtgtcatggaagttgatttgaatctgtaaaaagcttatggtgcattgtttatggctactctggcttaggtgcccataaatctttgatgaagtgatgtgcttctctgtttgcatttttacaggtaagatgggatgatagtacagatagcagccaccaaaacagagtttctccatgggagatcgagagagttggtggcagtgtctcggttacccattccttgtcatctgggtctaagcgaaccaaattgcactttcctcaaggcagtttggatactccatttcttagtaggttccacagtcccaacagtactatatatataatttcatttactcatgcatgttaactaatttgcattaaacttgtagatggaaatggtcacccggactccatgggaactgaaaatttccacagggtcttgcaaggtcaagaatttaggggttctaggtcccatggtgttgtatgctctgaatcacctggtgtaccaaactttcaatctcctgacaataggagattttctgctgatatgcggggctacatgatgccagcaagtgggcccccacagcggaacacagagtttacttatcagcccataggcttcagtgagtctcttggattcccagaggtcttgcaaggtcaagaaatgtcacaagtagttcctttgttccgaggagctacttttggcgctcgtacacagaatgacagagttgtctctgctaattctgtgcatagatcagctgcacagagtggattgctagcttcaactctagggcatcccatctcgcagtttactctgtcatcgtcaaaggtatcttctccctcgtcggttctgatgtttaaccaagcgacagctccaaatcatgaaacagtaagcggaaccaacaacaaaggtatgcatgtcagccagtttgcttcccaggagatgctctcagaaactgtaacctggcccggcacacaacgtcaaacgccgagcgaaatcacgagcaaccagttcgccctggcgagaatcccagctcctccaagcggagctgaatccggattgcccaagagggatgccgggagaagcagctgcagactgtttggcttctccctgacaggcaacatgctgggagaagatggagaaggcctagatgatggagccattgaagctggttgcgaaaacccgcccgtgctggagctgtttgggcacagccattctactcccggtgctcttcatgccctgtgtgctgctgctcccctgggaatgtgatgctgctgcagtactgatggtttgctctggggaaatggtcgttgcatcaagctacctagctgaaacaaactgaataatgtgttagctacttcctagatttcttcggcacattcttgtaaggattgcagcggcgccatttgtatgttggtgccacatgatgcatgtaagactgtaactgtaccttgaaatttcggctgtttgtccgtagcttatgacatgaagactatgcagaagcagatcctcgaacttaactacacgtagcatgctgtatgactatacgagtcaactgcacgtgcagttaagttggagtatcctgatggtgttgttttgacagttgtgaagctaggccgctagggtgttacttttcagctacttcaccgaattattattgcaaattatttattttatgtctatc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0515400, RefSeq:Os05g0515400