Os05g0515900

From RiceWiki
Revision as of 10:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0515900| Description = Similar to 28 kDa heat- and acid-stable phosphoprotein (PDGF-associated protein) (PAP) (PDGFA-associated protein 1) (P...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0515900

Description

Similar to 28 kDa heat- and acid-stable phosphoprotein (PDGF-associated protein) (PAP) (PDGFA-associated protein 1) (PAP1)

Version

NM_001062577.1 GI:115464884 GeneID:4339317

Length

4521 bp

Definition

Oryza sativa Japonica Group Os05g0515900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25643290..25647810

Sequence Coding Region

25645553..25645650,25646109..25646194,25647076..25647141,25647483..25647517

Expression

GEO Profiles:Os05g0515900

Genome Context

<gbrowseImage1> name=NC_008398:25643290..25647810 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25643290..25647810 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gtgtacaaatttgattcatttttgtgtttatatgactacttgactaattttgctctggtacagattggtaggacatctgatctctccaggcgtgaaagagaggagcttgaaaaacagaaatctcatgagcgtcacatgaagctccaggagcaagggaaaactgaacaggctaggaaagatttagagcgtcttactttgatacgccaacagagggcggaagctgcaaagaagcgtgaagaggaaaaggctgccaaggacgagaggaaggctgaggcgcgcaagtga</cdnaseq>

Protein Sequence

<aaseq>VYKFDSFLCLYDYLTNFALVQIGRTSDLSRREREELEKQKSHER HMKLQEQGKTEQARKDLERLTLIRQQRAEAAKKREEEKAAKDERKAEARK</aaseq>

Gene Sequence

<dnaseqindica>2264..2361#2820..2905#3787..3852#4194..4228#gcagaaacccccgccgcgggaggaggagagcagtcgccgcagtagggcttacgtcgccgccgacgagctccatggcgaggggaaagttcaagggcaagcccaccggggagcggagcttctccagcgaggagcagatcggtaagctacgaggcggcggtgtgccccaccaccaccaccctcccctctcgccgccgtacggccgtttggctcgcaatcctcgcgcgtcggatgctttttgggtttaataagtagggagatttggttgcttaattggagtgtcactgatcgacagagtttgtgggatgaatgatgcttggtgtttcgcttgaacgaggtggcttgttccgggcataaaaccctccttttttttgaagagggggttggggttttcagatcgggcgatcgggagcttgttgctctaccatcgcagtgtttggtttgatcccacattgtgtgtatttcttattattattgagaatttgtcatggtttgcaagcagtttgtgctttgttttgtgggagagaggagggtttaatttgttcttttaggtttgaagtattgtttgtttttcactgttctattgatgtctctcgtagtaatccgtgggtatgttcatccatccagattcctaaggctcgtggtttgcggaatcggctatgaagagctcggtgtaacttgtagaattgttgtgtttatgattttttgagcactttgccaaatttttaactgctggacaatcaaagaagaacttggtgttgaataatcaagaagaaagtgtgcgcgtgtagggattcgaacacgggaccttggggtagagagatgcacttgatagtgctgtggcaaggggtgtgtggtttcaaccccgaggtcttgtgttcaatccccaacacgttcacaatttcttaaaaaatatatttggagggatgtctctccctccaaatctcgtttcttttttgggaccatggggatgaaaccacacaccctgccacgacgctagcattaagtgtagtattttgagaattaagatggaactttgggcgtcatgttgagtgtcatttatttttgatatctcacgaatttggagctagttgcttgctgcctctgcatcctaatggaatagaaaatggatagtttttacactatttgatcaatgttttgagcttatttctgtattttgaatgcagctgccggtacttcagcaggtcgtccaaagaactttaagaaggttcattcatgcccttttcttttctacctagttattgatattaaacataacatttagcttgcttcgttatttctctcttatgctgtgcaaacatataaaatttttggctaggctgcaagcctataaaaaaatactacttattattaaattgttctgctactttttttttggaccaacttctcttttcattaccatgataaatcaatggatttctgatcaataaccaattaccatagtggcataaagcatttctagcctctttggagtcctgtaaaagcatttttttttgtcaaattgtgttgagacttgagccccacagtcttagctataattttgctttgaaccaaggtgtgcatgtcataatgtgcttatgatttgataaactgatatgctgcttgttgccactgtcttgtatcattaaatcaaatagaagcaatctgaaaaggaggtatatgatagaaggcaagaatcagatgaggaatatgatagaagccaagaatcagatgaggaagaatctgacaacttccagaagaacgtaagacattgtcctgctgaaagcatgcatttgccctcctttgacccttcattgtctaaactatttatttcttatgtgataactgttctatttttcaatattatatcagaaacataaaggcactgaaggtcttatcgagattgagaatccaaacctggtgaaaccaaagaatataaaagccaaggacattgatgtaagtcaaatatttgtttctgttcatgatggaggtagtctggtagcgatgcagttctgaggggaagaacatttacaggtcacaagttatatacagagttagactgtacgtctgctttagtaatagatttagcttttttttgtgtcaattctattgagtgaggtgcacaagtgaatattcagtaaagttatgctagaatgagtgattttactccatgtacttaccatgcctttcagaatgttatcgtccttgtacttcattgtatgtgtgggctttgtgatactgctactgttatactcttttcaattaagtgtacaaatttgattcatttttgtgtttatatgactacttgactaattttgctctggtacagattggtaggacatctgatctctccaggcgtgaaaggtgggtttgtgtactatgcaatgctcctgtcaatttaaaagtatttttccttcatgtgtaaattaagtgaaaaatataatgttgaatgtcaacagcataggtgtaagtttataaggactgcctacagttgacatcatagagggatggctggtaggaccatctcctctcaggattgttttcaaacaatgctgaagaaaagtattccaataatattttacactacgatttgttgatatttttcatgtccatgagtcatcttcattgcattttatcttcctgtttttaattaagtacaatctgcagtcattattttgaaacattattggtaacaaaatgatcctgatcctgaccctgacatcatttatggaaaatataaagcagttttcataatccttataaacacatcagaatgcatcgttgccatattcagcacttttacaaactttttcctgttgcagagaggagcttgaaaaacagaaatctcatgagcgtcacatgaagctccaggagcaagggaaaactgaacaggctaggaaagatttaggtgaggacctaagtaacaaatgtttatggctattctgtgacaccatccttctatggtttgaactatacttcctccggttctataatttttgatgttttaactatgacacagtctcttaaatatctttgaggttcttttatcataatatatacaattatagtacttcctccatttcaaaatgtattacatcgttgactttttgcataacgtttgaccattcgtcttattcaaaaaaataatttaaatatcatttgttgtgacttgttgtattatcaaaaatataatcttaacttatacttttacatattcatattaaatttttgaataagacaaatgatcaaactttgtgcaaaaagtcaatggcgtcatacattttgcaaaggaaataatactttgtaagacaaatttatatatgttgttatagtgcctttaaactaaatatttttaaagttactaatagtcaaagttataaaagtttgatctctatttttagatattggtttgtttatgcttggatcttgcaggttgtgctcatattttctgtcgagttcatgtaactacacaagtaagagctttgaaggaatgatctgtcatttgacagcctaaactagtatatggttttagcataccagcattaggaaatgatgacccacgtcatgctatttgccctttcatcaaccagaacctcttttaagaaatagatacaattcctcctttgcatgtgtgtatattttatattttagtgcaagtatgtatgtgactatgtgttgttccatatttcgtatgtgatgcatactatgctacttttcttttattcgagcgcagttacttatcataatctcaaacaatcatgatattaacttgcccttttccaactatagagcgtcttactttgatacgccaacagagggcggaagctgcaaagaagcgtgaagaggaaaaggctggtatgtgtctttatctgttagaagcaagtttattggaactttagaagattcagatcttagtctaagtatcttcataaacccagagcagctgctattagtttgttttggcatgtttttccattcatccacccatagcggctagttacctaacgttcctcgggagttggccatatttgtacgtcaactaagagtgacaagcgcaatcttacactgacactaacttttccttcacgtccttaagccatacaaaacttagtgattgtaacttgtagaataaactgtttgtttctgccctaccacaaattacatgctgatgttttttgtacttttactattgacagccaaggacgagaggaaggctgaggcgcgcaagtgacctgccaagctattggaacaagaaagaattttgacccgagctgtgatagctcaacgttaccttcctatgcttctgaattctgatatcacttgaactcccctatatttatttaccgtaggaatagtatgcagtagttatgtaaagtggttgtggtcgaccgccacgggtagatgcgacttttgagcttggagaggtagtaggaacttggtggtagcaactttggtgaacaattgtctactatttgtcctcatgccgcggtattttcgttatggtattttagactgttaatgatc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0515900, RefSeq:Os05g0515900