Os10g0508400

From RiceWiki
Revision as of 21:11, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0508400

Description

Similar to Methionine aminopeptidase-like protein

Version

NM_001071557.1 GI:115482857 GeneID:4349075

Length

4240 bp

Definition

Oryza sativa Japonica Group Os10g0508400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:19967866..19972105

Sequence Coding Region

19968142..19968206,19968300..19968350,19969089..19969244,19969463..19969538,19969732..19969779
,19969860..19969904,19969995..19970094,19970253..19970304,19970384..19970425
,19970530..19970591,19970672..19970770,19970951..19971024,19971136..19971205
,19971324..19971387,19971487..19971577,19971742..19971819

Expression

GEO Profiles:Os10g0508400

Genome Context

<gbrowseImage1> name=NC_008403:19967866..19972105 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:19967866..19972105 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaaggggggcgccgagtcgtcgatcgcctgcgctcgctgcggcaagccggcgtcgcttcaatgccccaagtgcgcgcagctgaagcttctgcgggagggcgctgctttctgcacacaggattgcttcaaggaagcatggagctctcataagtctgtccacataaagctagatgcattgacactacaacagactccagagggttggcaatattgtttgaaaaaagggcggacacgcacatcgcagcttcctcgttttgattggacaggtccattgagaccatatccaatatcaaagatgtgtgtggtaccagataaaattgagaagcctgattgggcgcttgatggaacccccaagattgaaccagatagcgatttgcagaaaagagtagagatcaagacccctgagcaaattgaaaggatgagagaaacatgccgaatcgcaagagaagttttagatgcagctgctcgcataatcaaaccaggaattacaacagatgaaattgatagagtggttcatgaggagacagttgctagaggtggatatccatctccattgaattaccatttcttcccgaagtcatgttgcacgtcagtcaatgaagtcatctgccatggaattccagatgccaggaaacttgaagatggtgacattgtaaatgtcgacgtaactgtgtattacaaaggagttcatggtgatttgaacgagacatattttgttggaaatgttgatgaagcttccaagcagcttgtccgttgtacctatgagtgcttggataaagctattgcaatagtgaaacctggagttcggtttcgagaggttggggagataataaatagacatgcatctatgtcaggtttatctgtggttaagtcttactgtggtcatggcataggagaattgttccactgtgccccaaatattcctcattattcaagaaacaaggccgtgggtataatgaaagctggacaaacatttacaattgagccaatgataaacacaggagtttggcatgaccgtctatggcctgatgagtggacagcagtgactgcagatggtaaacggagtgctcaatttgagcacacccttttggtgacagaaacaggagttgaagttttgacagcgcgattaccgtcatcacctgatgtctttccatggttgaagccgtga</cdnaseq>

Protein Sequence

<aaseq>MEKGGAESSIACARCGKPASLQCPKCAQLKLLREGAAFCTQDCF KEAWSSHKSVHIKLDALTLQQTPEGWQYCLKKGRTRTSQLPRFDWTGPLRPYPISKMC VVPDKIEKPDWALDGTPKIEPDSDLQKRVEIKTPEQIERMRETCRIAREVLDAAARII KPGITTDEIDRVVHEETVARGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGD IVNVDVTVYYKGVHGDLNETYFVGNVDEASKQLVRCTYECLDKAIAIVKPGVRFREVG EIINRHASMSGLSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGIMKAGQTFTIEPMIN TGVWHDRLWPDEWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPDVFPWLKP</aaseq>

Gene Sequence

<dnaseqindica>277..341#435..485#1224..1379#1598..1673#1867..1914#1995..2039#2130..2229#2388..2439#2519..2560#2665..2726#2807..2905#3086..3159#3271..3340#3459..3522#3622..3712#3877..3954#ctctctctctctctctctgctcgactccctctcgccgccgccgccgccgccgccgccgccaccgacggcaagcgcggcgacccgaccgcccgagacctagcctccgccaccgcaggtgagtgaggtgtccgtccgttctccgtcggcgggcgcttctttcccgcttttggctccttcgctgagagtcgtcatgtaaccgtggttccttttactctgggtggatggatccaaatcgcgcggcgcgtggtggggagcagagcagcttgggggggggggatggagaaggggggcgccgagtcgtcgatcgcctgcgctcgctgcggcaagccggcgtcgcttcagtacgtcttcttgctgctgcctgccggtaagaagaggcttctccaatcaagtcgggttctttactttttttttctttttttgctgtttttcagatgccccaagtgcgcgcagctgaagcttctgcgggagggcgctgctttctggtcagtcacagctcacaagctctcatttcacttacttcagctttgtagtacagcacaatcagtagtgacggttcacatgttcttgatacttaggaggagtataactgtataagtagcagacaaagaattattggatatcagcagttttgtttgagttctggcggaaccttctgaatagattggcaagtgtggggggtaatcttattaataaagccttccagtcattttaccatttactgtatctagggatgcaagcgggcgaacctgcttataggtaaaattattgggtaacctgcggatataaataagacctttaaatgaacttatggatcaacccactcgcatctttaaatgcggcaagtcggaccacgacgcgaaaacccgtggtttaccacttatttgacatataaatatgttcgcgagttggcccgcttgcatccctagctgtatcatgcagttctggcattatgtaaatttgggaatttttgtgtcctatgaagttgatcctggtccagtaaacttttttacttttgtttcataatcgttaaatggacttcattactggggaatggtaatggaggtagtgtattgacactgaagaaaatgcatcttgtcataattgattgacacatctttggagttgggagcatactagctttcattatgaatgcaacattacgaacttcagcattatgaacgaaaatatttgatgctttcgtattcatcaattgcttacagcacacaggattgcttcaaggaagcatggagctctcataagtctgtccacataaagctagatgcattgacactacaacagactccagagggttggcaatattgtttgaaaaaagggcggacacgcacatcgcagcttcctcgttttgattggacagggtatgtcaccatgtatttgcatttcctttttgttgagcccacaaaccatgcttctgtttcttgaagcttactaaacttgcttgctcgtgaatttattaataacttcatttgcaaaggagactattaaatttattaatgaacctgttagtactgagcatgcttactgatttgctagatttaggaccattagtacatattcttacctgaattctttgcagtccattgagaccatatccaatatcaaagatgtgtgtggtaccagataaaattgagaagcctgattgggcgcttgatgtaagtattaatttgtttttgtgtttgtgttccctcgtgaccttttcatcatgtcttgttaagaataccatttgaactgatagctttgtaaaacaagaaagaggctcattaagttggaccacagtctgttgttatcttctaagctgctctggtacatatcccctgacaggctgacattgtcaaacatttttagggaacccccaagattgaaccagatagcgatttgcagaaaagagtagaggtagagttatggacatatctgttattaccatatatattatgcaaatatatgtctgattttttttactcactgctgtgtagatcaagacccctgagcaaattgaaaggatgagagaaacatgccgagtaagcttgcagtacttacaatttttcactgaaatattattctggcatttccctaaccatttgtgttctactccatgctgctactgttagatcgcaagagaagttttagatgcagctgctcgcataatcaaaccaggaattacaacagatgaaattgatagagtggttcatgaggagacagttgctagaggtctggttaacctttacctgattgtatcatcaatgcttaatgaaaccttgtagtttgctaggttctataggttccatgtacttccctggttatcagatatgtcttgtcttgagttctatatatgcttgtttgtcataatttctgttcttggtcctcaggtggatatccatctccattgaattaccatttcttcccgaagtcatgttgcacgtaggttgcctttaacttattgcttatttagaggcttaaaggaatatgatatgctcacattgttgtcgctggtatccaggtcagtcaatgaagtcatctgccatggaattccagatgccaggttccccttcaatttatacatcaagctaatctttcagtagtgcttttgctaactttgctttgcattagaaagatttaagtttttatctgatctttctctaacaggaaacttgaagatggtgacattgtaaatgtcgacgtaactgtgtattacaaaggagttcatggtaagttctctgcagcctggtattgtatttcgctgctgaaagttgttggttttttgacacaatatataactaaactgcaggtgatttgaacgagacatattttgttggaaatgttgatgaagcttccaagcagcttgtccgttgtacctatgagtgcttggataaagctattgcaataggtgattccttcagtttcaatcttgtgttagtagcaatctaccttgctttatgccttggttatgtttaaacttcaaacatatgattgctcatttatctgaagtttctgttacatttattgaaacatcaaggcaagctatctgtgggaaggagatatgacatttgaacattttcatgtgcagtgaaacctggagttcggtttcgagaggttggggagataataaatagacatgcatctatgtcaggtttatctgtggttagtattacattggcactgacttgatcttaaagtgaagttaattcttctactggtatttcttttgtatatctgccccctaactactctaataaatgccttcactttcaggttaagtcttactgtggtcatggcataggagaattgttccactgtgccccaaatattcctcattattcaagtacatgtcttgcacctcgtttcttatattaagcagtatatgttagacatctgtaaaagttccgtttaatgctacacaatgtcatgcaatcttagtaaatagtctccttctaatgtaggaaacaaggccgtgggtataatgaaagctggacaaacatttacaattgagccaatgataaacacaggcaagtgtttttacactgtcaaattccatatcccgaacctgtcaaatatattgacaggcccctatcacagttttgtaaacagttcttatatttttgtaggagtttggcatgaccgtctatggcctgatgagtggacagcagtgactgcagatggtaaacggagtgctcaatttgagcacacccttttggtgagtgtcagactgacaaactcccttttttgttttaagaagctcatcccagtcctcagtttgataatcatgctaaatctcttttgtgaggaagctatggtctttgatgattttggattatgcatatgaacttgtttcccttcgttatccttttttctcttcaggtgacagaaacaggagttgaagttttgacagcgcgattaccgtcatcacctgatgtctttccatggttgaagccgtgacgccattgctccaggcattatgcacaaactagcaagtgatacgaatacaatgtggtcaatgggacaacacaatttttcaatttactctttttatcattcagttgcccaactctccgaagcagatattgtcccagtgataatacctgttagttctgacgacttgctgcaaccactgttcacctagcaagttgtttctggctgtgttaagtattttgattgatttgttcgagtgacatgaatcataatttgaactggaaatgggatttatccaggagcacatttgtcg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0508400, RefSeq:Os10g0508400