Os05g0516900

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Revision as of 10:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0516900| Description = Protein of unknown function DUF300 family protein| Version = NM_001062584.1 GI:115464898 GeneID:4339325| Length = 58...")
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Gene Name

Os05g0516900

Description

Protein of unknown function DUF300 family protein

Version

NM_001062584.1 GI:115464898 GeneID:4339325

Length

5812 bp

Definition

Oryza sativa Japonica Group Os05g0516900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25690456..25696267

Sequence Coding Region

25692476..25692691,25692833..25692889,25693375..25693483,25693876..25694060,25694142..25694230
,25694424..25694679,25695170..25695412,25695502..25695813

Expression

GEO Profiles:Os05g0516900

Genome Context

<gbrowseImage1> name=NC_008398:25690456..25696267 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25690456..25696267 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaatgaaaaatgttgtccgtttctttttcgtgttaatacatgtgagcagttgtttgggtcgatcagggaaaatgttttctcctggctttgtttcattgtcagagtcattaccgagctggccaattgtgagtgcaggaatatctgtgaccgcttcacttgttttatccttgtttctaatatttgagcatctctgcgcataccatcaacctgaggagcaaaagttcttgattggtctcattctgatggttccagtatatgctgttcaatcattcttctcattactgaactcaaatgttgcatttatatgtgaactgatgcgggactgttatgaggcattcgccatgtattgctttgagagatatctcatagcatgtttaggtggggaggaaagtacaatcagattcatggagggtcgatttcaattcagtgagagttctcctctgctagatgttgattatgattatggtattgtgaagcatcctttcccattaaactggtttatgagaaattggtaccttggtcctgatttttaccatgctgtgaaggttgggattgtgcaatatatgatactgaagcctatttgtgccatcttggcaatttttatgcaacttattgggatctatggggaaggaaaatttgcatggagatacgggtacccatatttggccattgtcctaaatttcagccagacatgggcattatactgtctaatacaattttatactgctaccaaggagaagttggaacctattaagcccctgtctaagtttctaaccttcaaatccattgtatttttgacatggtggcaaggtattgctgttgcatttcttttttcaactgggctttttaaaggacatttggcgcaaagatttcaaacacgtatccaggattacatcatatgccttgagatgggggtggctgcagtggttcatttgaaagtatttccagctaaaccttacagacgtggggagagaagtgttagcaatgttgctgtgatgtctgattatgcatctctgggagcttcagatcctgaagaagaacgagagattgacaatgtagcaatcatgcaagctgctcgtcctgattccagggaccggcgattgagtttccctcagagtgttcgcgatgtcgttttaggaagtggtgaaattatggttgatgatgtcaaatatacagtttcccacgtcgtggagcctgtggagcggagtttttccaagataaaccggacacttcatcaaatctccgaaaacgtcaagcagcttgagaagcaaaagagaaaggctaaggatgatagtgatgttccccttgaaccattttcagaggaattcgcagaagctcatgacaatgttttcggaggtagtgttagcgacagtggattagctaggaaaaagtacaagaacaccaaaagggcaccgtcgtctctgaaaccgttcgagttcagattaggtagatggttccagtag</cdnaseq>

Protein Sequence

<aaseq>MAMKNVVRFFFVLIHVSSCLGRSGKMFSPGFVSLSESLPSWPIV SAGISVTASLVLSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAF ICELMRDCYEAFAMYCFERYLIACLGGEESTIRFMEGRFQFSESSPLLDVDYDYGIVK HPFPLNWFMRNWYLGPDFYHAVKVGIVQYMILKPICAILAIFMQLIGIYGEGKFAWRY GYPYLAIVLNFSQTWALYCLIQFYTATKEKLEPIKPLSKFLTFKSIVFLTWWQGIAVA FLFSTGLFKGHLAQRFQTRIQDYIICLEMGVAAVVHLKVFPAKPYRRGERSVSNVAVM SDYASLGASDPEEEREIDNVAIMQAARPDSRDRRLSFPQSVRDVVLGSGEIMVDDVKY TVSHVVEPVERSFSKINRTLHQISENVKQLEKQKRKAKDDSDVPLEPFSEEFAEAHDN VFGGSVSDSGLARKKYKNTKRAPSSLKPFEFRLGRWFQ</aaseq>

Gene Sequence

<dnaseqindica>2021..2236#2378..2434#2920..3028#3421..3605#3687..3775#3969..4224#4715..4957#5047..5358#aagcgccagacaaattcgtctccctcgttggaagtggaggcgcggaggcggaagcttttcctcctcctctcctctcctctctaccctaggcgcgatctgctcgtccgcctcggcgatccacaggtgccccccgccttctccctctcctcccccccatctcggctcggcttcccgatccaattcgccaattcgcttgctgttcgattcgccgggagtgtcgggtagagatgcgttgccgccgaccccgccgccgcgtggttttggactttggaataggatggtttgggcgtgcggcggagggggagcgggttgccgcacgaattgttgattcctttcgtcaatgcagtgtgatttttgcgcggaggttatgggggggggggggagggggatcgggagcccaatgtgctagtagagttttgagtggttctgaacaaatgcgtgttctgaattttttttttcttccacggagccatggaatctgtaatcgtgaattattactactatactaagttagttcgtgtagatgactagatgttggtcccgtgctatagctcctgcggtcagtggagtggtcgccaaattgctatttggttggagcagggggcttaatttgtgattactaacccgtgcgatctgtttgtaagttgcgtcgtggactttgtaaacgctgatttagttattccatcaatttgcagttgctctcgtcatttccttatctgtgatgctgttgattggttggtggtttggttgtggaccagttgttgagaagagcagttagatcttgttaatagttttttttttctgctgtacatggtaacctataacatgcagtgtgtcctgaagtcttatgttgcttatcgaatcaaattaggtaagtatatgagcagtcgccattcactagtttgaattggagggctaagttaatcattttctctcttacaaagattagccacacagttcttaggaatgaaaagaagatgtatcattattaatattaataattagagcatgctttaagcgtatgacaagagtcaccaaggtttgccgctatggttactggtatgtgtttgtattttgctttgatcctttgcttgatgcctttttctttctggagactcatgaattctagagtttaactaatagctatgctttatggctttgttcttggaaaccgggacacaggatctttgaacagtgaattcagatatgtatttttagataacaatgatctttgtaattctgcttttattaaaacctcccgttattggctatcatgtttatacaccatctggtaactaataatgaacaatgtggatataatttcaaaatcaacaggaaggagttgtttgtaacatgttggataacaatttagttatagctgtaagaacagtttttggtggtctgtttgttacttttactgaatcgaagggagcaatgtgctcatgtgtggaaattttataatgtactatttcatttgcaggtaatagaattgtgcatatccagactttgcttgaagtgaagtccataattcagtattctaattattcaaaaacttaagaaaattgggaaactggctatgctaggtttgatagtggaattatctgaaatggatgggttttgagtgatcttttagatgttgacaatttctttccttgtttacttttacgctctataattccgtgataactaatagatatttatcattgctcctttatatttctgccagaagttgtgtcacaatattttaaaagcaaaagacagtttttagcctaaaatcatcactgttatgcctctgattttaaatcattcaaaaattgaatttgtagggaaggagcagcatgctccacaaagacgcactacagaagactaaagagagctttttcataccaaagaagtacaacaaaagatttgctcctcattttctgaatcctgggactctctagcctgtagaagaagaaaggcaggaatttcagctcaagagaacagatcacaatatttacccacggcactgtctcgcaatatggcaatgaaaaatgttgtccgtttctttttcgtgttaatacatgtgagcagttgtttgggtcgatcagggaaaatgttttctcctggctttgtttcattgtcagagtcattaccgagctggccaattgtgagtgcaggaatatctgtgaccgcttcacttgttttatccttgtttctaatatttgagcatctctgcgcataccatcaacctgaggtagtcttctttcattatttcatcagaattattagaataattattttgatatagaagattttagacaggaataagggatcccttcctgttcttttcacctgtgctgttattttggtcaattaattactttgtctgttgcaggagcaaaagttcttgattggtctcattctgatggttccagtatatgctgttcaatcagtaagtatacccagatgcttttaccttccttccagcatattggtggtgtactgctattgcggttaaattagtgtgtcacagttctgatacttggaataagaataggactccaaatattttgggaagggataagataagcttcattttaaccgttttactacatactgtgtggtagtaatccatgttatatcttgctagagtttagaatatatttgaccatttcattatatagtcacactgttttagttgtgtccatcttgagcatgggaaatcgagctagtccaaaattatttacttatttaaagtagccagtaactctgttctctgaaatgtattctctttaagatacattgctatcactttgtaatgtatggttcccttcctgtaccacattttgtttttgccaacttgaatgtgttgtatataaaaacttcggtttatttctttcattcctgatagaatgacctttcttgttctttttgcagttcttctcattactgaactcaaatgttgcatttatatgtgaactgatgcgggactgttatgaggcattcgccatgtattgctttgagagatatctcatagcatgtttaggtgggtatatatgatttttttttttggtcaggattcttagctgataagttttgaacttttgagcaatagttattcataatcatgaccttagtgtttcacttgcacgtataaaaataaatctcatcatctaatgcaacttaactgaattgaagtttcactttggggtatattttttctatgctttttaaaagttgtactgacatactataaagttccataagagtgctgatgaagtacattattctgcttcctgctttaatttggccaatgcatagcgcttgcttcattagagggttagtgtgaaaagtataatcttttagcatacgatgcttccagctttgctaagatattttccttcaacgttcatttgaccggaacttctgtcatttaaggtggggaggaaagtacaatcagattcatggagggtcgatttcaattcagtgagagttctcctctgctagatgttgattatgattatggtattgtgaagcatcctttcccattaaactggtttatgagaaattggtaccttggtcctgatttttaccatgctgtgaaggttgggattgtgcaatatgtaagtgtaatcatgaaggcagctctctttaccatttgctgattccgctgaatggttctgattgagcatgcttttctgtagatgatactgaagcctatttgtgccatcttggcaatttttatgcaacttattgggatctatggggaaggaaaatttgcatggagatacgggtaggagtcatttcctcttcctggggcttctgttccattaattttcagtcccgccctctgtttgtcctgctctgtaataagatggatggtgtattatttaagtcattctatgcaaaagccatgattcttgttggaggctggccaagatgtttcaagtttctgcattctcaccaaatttccaatccttctgcaggtacccatatttggccattgtcctaaatttcagccagacatgggcattatactgtctaatacaattttatactgctaccaaggagaagttggaacctattaagcccctgtctaagtttctaaccttcaaatccattgtatttttgacatggtggcaaggtattgctgttgcatttcttttttcaactgggctttttaaaggacatttggcgcaaagatttcaaacacgtatccaggattacatcatatgccttgaggtatgcattatccattatggcttttcatacttactagtttcgggttggttgctagcatgtaccctgtacgtagttgtaagcctgcatagtctgcatagtccttatcagtgggaccctggtattgtctagatcatcatatttgttcatctttttaaattggttctctatggctttcttttatgctgttttcaatatagttgtagctgcatgagaatgtgactgagagctcaatacctgcttatcaatattgctgcgcttgtattttctgtgaactttattctgccatgttttgcactaggcaacctttttttttcttttttattttctgcactacatcaacttctattacacaattgaggatattttgttttttgcttcattagcatgggatatactgcagagaatgaccctactctgatatctaatttcttaataaataatgttttatgtaagatgattcccaaagcattttgtatcccttgtatggcagatgggggtggctgcagtggttcatttgaaagtatttccagctaaaccttacagacgtggggagagaagtgttagcaatgttgctgtgatgtctgattatgcatctctgggagcttcagatcctgaagaagaacgagagattgacaatgtagcaatcatgcaagctgctcgtcctgattccagggaccggcgattgagtttccctcagagtgttcgcgatgtcgttttaggaagtggtgaaattgtatgcttctcattttgatgttatagtcacctgtacctatcatattatttctcttccaaattcacatttttctctcttttacctttcagatggttgatgatgtcaaatatacagtttcccacgtcgtggagcctgtggagcggagtttttccaagataaaccggacacttcatcaaatctccgaaaacgtcaagcagcttgagaagcaaaagagaaaggctaaggatgatagtgatgttccccttgaaccattttcagaggaattcgcagaagctcatgacaatgttttcggaggtagtgttagcgacagtggattagctaggaaaaagtacaagaacaccaaaagggcaccgtcgtctctgaaaccgttcgagttcagattaggtagatggttccagtagtcagccagttgtggtttattgggttttgtttctgaccaacagggagctaacctcaaatccagcagtttatacaacataggacatactgggggcaaagcgatgacatttccgaaaactaacagttcacaggaggatgatgtgcactggagcttcagtttccttcattaactttcctcttgtgtttatacagctcgtcctggcccttgtcaatttcaggaggcagttactagaattttttttgtcatgagagcagccttgtttagtctagttaactacacttactacaggcaaagaaatattaagccgcggcaaagcaactactactgaatactgatgtaaccctccttaagtttctttgaattaacatgcatagaagggatacatttgtaaactgatgaacaacatgtttcaaatcggtaaagtgataatagcaccaatgtgaagttctgttgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0516900, RefSeq:Os05g0516900