Os10g0559400

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Annotated Information

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Structured Information

Gene Name	Os10g0559400
Description	Similar to Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA, complete sequence
Version	NM_001071902.1 GI:115483399 GeneID:4349368
Length	4063 bp
Definition	Oryza sativa Japonica Group Os10g0559400, complete gene.
Source	Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome	Chromosome 10
Location	Chromosome 10:22470316..22474378
Sequence Coding Region	22472122..22472151,22472251..22473015
Expression	GEO Profiles:Os10g0559400
Genome Context	<gbrowseImage1> name=NC_008403:22470316..22474378 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>
Gene Structure	<gbrowseImage2> name=NC_008403:22470316..22474378 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>
Coding Sequence	<cdnaseq>atgattgttggtgatgggtctcggacttccttctggcatgattgttggattgcttcagaatgcttagctactaaatttcaggcactttacactcatacaatggacaatcaaatttcagtcaaatatgcacttcaacagggtttaacagcaagtttggtgccgcgactctctgaaacagctaggcaagagtgccaatgtctgcaggacctgctacaagacttttccttaaacaatgagcgggacattcgcacggggggaatcatgggaaaattcacaactaagaacatttatgacactaggttacccccaggaatttcttctcctaattggaacctaatctggaagtgccgagcacctttgaaagttaaattgtttgcttggcttcttgtcagagaccgtctgtcaacaaaacaaaacttgctgaagaaaaagatagttcaaaatggggtttgcgatgtctgtcaacaaggggatgaaacggcagatcatatgtgttttacatgtccttttgtgcagagtttctgggaacggattagggtgaatccgacaattcaggatgtgtggctactacaccagcttaaaccttctcccaatgtcccggagctccatcatcatgtcttcttcttgctctgtatgtgggcgatctggaatcatcggcatgatgtcgtcttcagggggcaaactccatcgattcgatgctgcctacaaagatgcatcaatgaagcagccctctgggcagaaaatttaaaaatagaggatagacatgtggggaagctctcccccccggtgatttag</cdnaseq>
Protein Sequence	<aaseq>MIVGDGSRTSFWHDCWIASECLATKFQALYTHTMDNQISVKYAL QQGLTASLVPRLSETARQECQCLQDLLQDFSLNNERDIRTGGIMGKFTTKNIYDTRLP PGISSPNWNLIWKCRAPLKVKLFAWLLVRDRLSTKQNLLKKKIVQNGVCDVCQQGDET ADHMCFTCPFVQSFWERIRVNPTIQDVWLLHQLKPSPNVPELHHHVFFLLCMWAIWNH RHDVVFRGQTPSIRCCLQRCINEAALWAENLKIEDRHVGKLSPPVI</aaseq>
Gene Sequence	<dnaseqindica>2228..2257#1364..2128#gaactggtaaaaaagtctatctttcctccctcgaggacttgggaggcgacggcgctccgccgccgcagcgtcggaacgaatccccggcggcggcggcggcggccaacaaggggaagaagaagaagaagaagggcggcgctgccggcggcagaggcggtgggaggtggccaccgattttagccgaagaaagatctccatatcaatcgtctcaagggcactaacctcctcacagtaagccaaagcttccccttcaatagtttgatgaccccaaccatgtctgcatccagtatactgcttcttgaatcagtgcttctatgagggcaactagatagtagatgcttgatttttgcgacgaccttgccctggatccagtgctaatcatgaaatgtcccatggaagagttcttgaattgtgtactgcacatgatttaattatccagtataccgctgcttgaattattcaactatgtgtattgatagtcagtagagttgagggtgacagccactgacagagcctctctgccttcatccagattcatttggaatgtggtaaaatgcacccttaatctgaagaaaatgaataatatccaccacattttttggggatggctatatagtttgaacaaaaagacaagaaactagtagtacttgggattgttgaagtaatctgggctatatggaaagccaaaaatgcctgttgtgcgcttgctttaggaacaaggtgcctgttgatcgcactgaactaataaatgatgtgtgttattggatctcttcgtggcagataacggaggaagaacaatgaagctgcaacggggagtggtccacctaaagaaagtagcagacaatggggagtgatcgttctaaagaaagtggcaggtgagatgttcaactccaaatatggatagaatcggtagctgaaagactgaaccccactgtctttatttgtctctcggtgtgtatcattcatatgcagtgttggctttcgtcataaatcaataacctagctatcttgcaacagttttttttaaatatatatatatatatcttgcctggtttgatatatatgtagaagccattgcataaccgtacaaaacattcatatcctcttgaagccaaccatcaagtacatcaggaaagatggccagtagtatctttgacaaattgcaagtggagttcatcgaccaagatgagggtgtgcaggttgttgcagacaccattggaagctctggcgaggttcctgaaaggtatgtgaggcatgagattgaggccaatattgtcataattgacaacgccaatggttatagtctaccagtaatagacatgtcaagattgatcaatcctgacttctcggacttccttctggcatgattgttggtgatgggtctcggacttccttctggcatgattgttggattgcttcagaatgcttagctactaaatttcaggcactttacactcatacaatggacaatcaaatttcagtcaaatatgcacttcaacagggtttaacagcaagtttggtgccgcgactctctgaaacagctaggcaagagtgccaatgtctgcaggacctgctacaagacttttccttaaacaatgagcgggacattcgcacggggggaatcatgggaaaattcacaactaagaacatttatgacactaggttacccccaggaatttcttctcctaattggaacctaatctggaagtgccgagcacctttgaaagttaaattgtttgcttggcttcttgtcagagaccgtctgtcaacaaaacaaaacttgctgaagaaaaagatagttcaaaatggggtttgcgatgtctgtcaacaaggggatgaaacggcagatcatatgtgttttacatgtccttttgtgcagagtttctgggaacggattagggtgaatccgacaattcaggatgtgtggctactacaccagcttaaaccttctcccaatgtcccggagctccatcatcatgtcttcttcttgctctgtatgtgggcgatctggaatcatcggcatgatgtcgtcttcagggggcaaactccatcgattcgatgctgcctacaaagatgcatcaatgaagcagccctctgggcagaaaatttaaaaatagaggatagacatgtaatttctgcttggaaaaacattttcacctcccccttaagatctctaaacctgatgtaatgaaccttttcactcctttcttgtaatgacaaaattcaggtggggaagctctcccccccggtgatttagtcaaaaaaaaaaatcctgacttctctgaggaggagatcgcgaagcttggatctgcatgtgaggattggggatacttccatgtatgtgttctctctgatctcacatacatttttttttctataatggaattgaactcacataataactgattcagttcaagtaaaaaagaaggcaccaactgtttttactctgcaatagcgaggactttccacatcaattagactgcagcaacagcaagtgatcttcagaaatgtgcaatttttgcagcttgtgaaccatggggtggatgcagggttgctgcaacagatcaaggctgacatcacggaattcttcagactccctctgcaggagaaggccgtggcgatcccacccaatggcttgcaggggtttggccaccactttttctttccaaaggagcagaagctggactgggcagatttgctgttcctcgtcacacggccagttgaggaaaggagcaatggatttctggcctacaaagccttccacattcaggtgagcaaatgcttcatttaccagtttgctgctgtcatctgatgccagtctccagagcataattttatctgtcaaaacaaaaatttgatcagaaagtatagcattaggattggggaattgggaatagctgaactaagcatgaattatcatatggaagaaatctatttaatggaaaatgctcaatgctgcagaaatatgctcattccccatggatgctggtgtgagagaaccccatgaaatccagttgattccctttctgaaatttggtcattacagggactcacttgacaagtactcgttagagattgcatgtgtctactaagctgttcaagttcatggccatcaacctgggagtcgatgaggaagcactccttggagtattcaaggggcatactcagagtgtaaggatcaaccattacccccactgccgtcaggctgacaaggtgctgggcttttcagcgcacaccgatggcgtcggcttgacactgctcctccaagtgaacgacgtgcaagggctgcagatcaggaagaacggcaggtggttcgctgtgaagaatctccctggagccctcgtcgtcaatgttggtgacattcttgaggtgaatgcatttggttaattaacaccttccttggcaatgtttttaatgacgggcaaaagctttgtgttatgcatcatgccatcattggttgataggaagaaaataaacagctgactgaaattgttgacaaaatttcctaagagccataaatatgttggtgaaatagagtatgtatcacccttcttttttttccttaacaaaatgaatgagtgacacttgatcatctttcagctaattctctacatactaagttgctttcgttctcatcagatcctcacaaatggcaagtacaagagtattgagcacagagcggtaataaaccccgataaggaaatgatcacccttgctgcattccataaacccccgctttcctgcacagttggagttggcccactccaggagcttctaatgaaaggtaaggcgcactacaagacggttgatgtcgttgagttcaccaaaggctactttactgcgaagctggaaggcaggagctacctggagagattgaagctgggagtgtgatgatgtcaggatgggatttttctgcctctcttgatccttttgttttcgtgaaaggctaatgacactgtatcttcctcatcctggtacagttcagctggtatttgccttgaccatacactcaagtgtacctttcactatttatatatgatatttgctattatttgtgtactct</dnaseqindica>
External Link(s)	NCBI Gene:Os10g0559400, RefSeq:Os10g0559400