Os10g0560900

From RiceWiki
Revision as of 21:12, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0560900

Description

Aminotransferase, class I and II domain containing protein

Version

NM_001071913.1 GI:115483421 GeneID:4349380

Length

3746 bp

Definition

Oryza sativa Japonica Group Os10g0560900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:22560646..22564391

Sequence Coding Region

22560889..22561084,22561319..22561431,22561623..22561730,22561822..22562060,22562156..22562195
,22562301..22562390,22562472..22562605,22563129..22563217,22563456..22563606
,22563685..22563753,22564071..22564194

Expression

GEO Profiles:Os10g0560900

Genome Context

<gbrowseImage1> name=NC_008403:22560646..22564391 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:22560646..22564391 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcagtgggacgcgctcgtggacgccgcgctggcgaggctggcgtccaggagcctcctgcgcgccacgcgccccatcgccctcgcgccgccgcccgcgccgccggagaccttcccctgcccaggcccgtgggaccgcgcagccgtcgagatccggctcgaccgcgcaacgctccaccaatggctggctgaaggtggtgaggggagtggccaagaagagaaagtggacgagaaactgattcttttctccgggaatgattacatgggcctcagctcgcatcctgcaattcgccatgccgcagtgaaggcagctgaagagtacggcatgggccctagaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcagagctgaagaaaaaggaggattgccttctttgtcccactggattttctgccaatatggctgtaatgacggctctgggaaacatcagctctctgttggctgctgggagaaaacctgcggaggacgaaagaatagcaattttctcagatgctctgaaccatgcttcgatcattgatgggattcgccttgttgagcgacagcaagaagtggtatcatttgtgtacaagcactgtgacatgtcccatcttgaacttttgctatccagttgctcaatggaaaagaaagttgttgtcacagatagcctgttcagcatggatggtgattttgctccattgcctgagcttgtcaagttgcgcagaaagtatgggtttttgttggtgatcgacgatgcacatggaacacttgtttgtggtgagaatggtggtggtgcacctgagctgtttgaatgtgagaatgagattgacataagtgttggcaccttaagcaaggctgctggctgccagggtggttttatagcatgcagtacccgatggaagaggctgattcaatcgcgaggtcgttccttcatattttcaactgctttaccagtgccagtagttgcttctgtgtatgctgccctctatgtatcaagggaggagagatggcggagatcagtgatctggaggcatgtgcagtattttgcctctttgacaaaactcaacataacaagtcccataatttccattgtagttggaagtgaaaaagcagcacttagagctggaagggatatgctaagatctggatttcatgtcacgccaatccgaccacccacagtaccgcccaactcatgcaggttgcgaataactctcagtgcttctcattcttcggatgacatcaaaaggctggtggatgcgctgacgccgtggctccctcacaaacatgatattcagatatatgctgtggcatcaaagctctaa</cdnaseq>

Protein Sequence

<aaseq>MAQWDALVDAALARLASRSLLRATRPIALAPPPAPPETFPCPGP WDRAAVEIRLDRATLHQWLAEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAV KAAEEYGMGPRGSALICGYTTYHKMVEESLAELKKKEDCLLCPTGFSANMAVMTALGN ISSLLAAGRKPAEDERIAIFSDALNHASIIDGIRLVERQQEVVSFVYKHCDMSHLELL LSSCSMEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGA PELFECENEIDISVGTLSKAAGCQGGFIACSTRWKRLIQSRGRSFIFSTALPVPVVAS VYAALYVSREERWRRSVIWRHVQYFASLTKLNITSPIISIVVGSEKAALRAGRDMLRS GFHVTPIRPPTVPPNSCRLRITLSASHSSDDIKRLVDALTPWLPHKHDIQIYAVASKL </aaseq>

Gene Sequence

<dnaseqindica>244..439#674..786#978..1085#1177..1415#1511..1550#1656..1745#1827..1960#2484..2572#2811..2961#3040..3108#3426..3549#actcgcctccgtcgcggtgagcgagcgagcgcgagcggcgatggaggagacgaggaggaggggtggtcgaatgtgagaggcgaatccacgtcttgccgctgagaaggcggcgggagggagcaacgtcgtgagacccaccacgcggtcgctgacgggtgggcccaaccacccggccgccgccactcccgcgcccttatcatctatctgcctcgtcttctccgccccctcaagctgttcgacggaatggcgcagtgggacgcgctcgtggacgccgcgctggcgaggctggcgtccaggagcctcctgcgcgccacgcgccccatcgccctcgcgccgccgcccgcgccgccggagaccttcccctgcccaggcccgtgggaccgcgcagccgtcgagatccggctcgaccgcgcaacgctccaccaatggctggctgaaggtccaacctttttttatcatctgctttgcttccatgcatatcaaattttcatttttttattattatttcttccatgtaataactgcctttgagataagcctaaacaacatgttctagtttctttcaatatcatttttaatgggaaaggtgttatcaacaattctagttgttatcaatatagtttcgttttgcagaaactctaccaacttctcatgtatcgttttacttgattaggtggtgaggggagtggccaagaagagaaagtggacgagaaactgattcttttctccgggaatgattacatgggcctcagctcgcatcctgcaattcgccatgccgcagtgaaggtgctcctttcttgcacccatggctattgtttggtgcggaatttttttgacactctaggatttgcaccatgtttcattgaggggcaaatcctagactggcgcatgatcgatttttccttgtttgatctatggagtggactgaatcaatgcttcggtggttaactttgccaacattctggtgtatctactaggcagctgaagagtacggcatgggccctagaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcagagctgaagaaaaaggaggtactgttgcgttcaaaatttaagcaaccacatgtgcccggtatacaaaataaaataaaaaacttgcagccttactagagtccttctacaggattgccttctttgtcccactggattttctgccaatatggctgtaatgacggctctgggaaacatcagctctctgttggctgctgggagaaaacctgcggaggacgaaagaatagcaattttctcagatgctctgaaccatgcttcgatcattgatgggattcgccttgttgagcgacagcaagaagtggtatcatttgtgtacaagcactgtgacatgtcccatcttgaacttttgctgtatgtttttcactttccagtcataactcataacatacaaaatgctaagcactaatttacttagttataaaccatgtttgtgattacacatgcagatccagttgctcaatggaaaagaaagttgttgtcacagataggcaagttatacatccaagtaaatttcatcatttaagaagcatttattctctgtattagtgagtagtgtaccgaactcagaagctcttttgattggtaaaatgcagcctgttcagcatggatggtgattttgctccattgcctgagcttgtcaagttgcgcagaaagtatgggtttttgttggtgatcgacgatgttagtatattatcttccctgaaatacagtatttttctggcctaatattaatcaagttatgttgcaaatttccttttcaaggcacatggaacacttgtttgtggtgagaatggtggtggtgcacctgagctgtttgaatgtgagaatgagattgacataagtgttggcaccttaagcaaggctgctggctgccagggtggttttatagcatgcaggtattctattctaaggcatgtccatattatctggcaaggaagaactgctcatagtgcatattaaactgtggaaatgaatcatagatgccttgaaataaaggacttcataaaatacctgagacaaaacctacttgataatatgtaaacagtagcggcatgctcatcacggccaacaggaaatgttagaacaaatgcttggatgacttcaaacattttccatatctgttgctgtcctgagtaacttatgggcatcggcgattatagtttaggaattacgctaagtgcttaacttttgatgttaatagatgctctggacaccacataatattatttatcagggtcttggttatgaaatttgcacttcagagcctcatgcttataaactcaataaatagaagttctcttgaattagcctctcttgataatacttcatgccataatctctgcattttggatgcatgccataatctgtctttacaatttccaatcttatgacgaataataatttgaaatttgtttgcagtacccgatggaagaggctgattcaatcgcgaggtcgttccttcatattttcaactgctttaccagtgccagtagttgcttctgtgtatggtaatactctacacattgtgttctaataatttaaaatattgatatgggaatctggtattgattgctacatatacctgtttgtgttacactgttttcacgaggaagggcatagaaaaccttctctatcacattaatccatagaaggacgaatttaaataaaacattaactaacgtaaaaattatctcattgtcaaagtaaatatcaggaattcttctaaacagaatcaattaatttcagctgccctctatgtatcaagggaggagagatggcggagatcagtgatctggaggcatgtgcagtattttgcctctttgacaaaactcaacataacaagtcccataatttccattgtagttggaagtgaaaaagcagcacttagagctggaaggttctcacttcctcccatttttgtttcttgataatatcagtagttgtgtgttctaatcttttcattttgaaactgcagggatatgctaagatctggatttcatgtcacgccaatccgaccacccacagtaccgcccaactcatgcaggttgaaaattttctgttcctagcattttccatcctaatctctattcatagacttcagcaacctaaagcatcagtgttcctagggaccatagactgtaattggattaggaaccagggtatatatgcatttttattaatgtgttttcttggtctttgctactgctctccaaagatggaatccctgctagactttttttttgaactgcttgctataatttgttgtccagatattagatggtcctagtgttcatcgacataaggtcgggcctgtttcaaccaagattaactgttttatttctttccatgaattctttgcaggttgcgaataactctcagtgcttctcattcttcggatgacatcaaaaggctggtggatgcgctgacgccgtggctccctcacaaacatgatattcagatatatgctgtggcatcaaagctctaaacaatgattcatccgagtgttcagctcatcaagcttcaagaagtaacattagctgagatcccaccggatgatatgggagaaaaggggataagttagtgctggttgacgcgattaatactgggatatctttgtattacagcacaatcaatatgaatatgaaacataactgatgaaacagtactacatcttttgccctc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0560900, RefSeq:Os10g0560900