Os10g0565600

From RiceWiki
Revision as of 21:13, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os10g0565600

Description

Zinc finger, RING-type domain containing protein

Version

NM_001071953.1 GI:115483501 GeneID:4349420

Length

7057 bp

Definition

Oryza sativa Japonica Group Os10g0565600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:22843975..22851031

Sequence Coding Region

22844467..22844628,22844724..22844811,22844902..22845132,22845226..22845393,22845663..22845856
,22846006..22846089,22846170..22846289,22846383..22846569,22846668..22846828
,22847570..22847641,22848092..22848168,22848593..22848787,22849342..22849414
,22849490..22849576,22849761..22849898,22850036..22850238,22850324..22850486
,22850716..22850847

Expression

GEO Profiles:Os10g0565600

Genome Context

<gbrowseImage1> name=NC_008403:22843975..22851031 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:22843975..22851031 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatgccgcagctcttcagtatgagaaccagaagctggtgcagcaattggaggcacagaagtccaaaatgcgtgcattggaaggcaagttcaaggagctgagggatgagcaatgttcttacgacaatacattgatttgtttgaataaaatgtggaatcagctgattgatgatttagtgctgcttggggttcgagctggtggggatttaaacggtttgcaagcgcttgatcatgaagagatgtcagaagaatctcttgagtcatgtccttctgaggagatatttctcttcagactcttgaattccaggaatttcagaaataatgatgacagtagcctgtcaaaattagttgaggaagctcttgccttgcgctattcaacaacagttactctgatgaagtccctgcaagaggcttttgctgtacagcaggctagaagtgaatctttatcattagctttaaatggacagaactccagtgaagacgttattgtggcccttgaaaaccataatgattacttgaaagaagtggttgacaatttacgtcaagctgtgtctatcatcaacaggaagcacgaaaagtatctggatgagattgaggctttcaaaaacaatcaatcaagagaactacatgaagtaaagtgtctttcaggtgagctagaggaaagcatggcagagcttgaggaaagccgtcgaaagttggctgttctccagttgcaaacgggtggaggctcactgatgaacacatctgctcctaacggtgtgaacggtagtgtttcaactgataaatcttcagacaagggtatgggctggcgagatctgaaagatgctgttgaggaggctaagactcttgctgcaaaccgcctatttgaactccatgagactcaagaggataatctgatactatccaagcagttggaagatattcaggatcaattaaaagatgagaactatattgttacatcaaaaccatatacgattctcagtgaccagttacaccatctgaatgctgagatagagcgatacagggggttagttgaagtgctacagaatgaaaaggaccagctcatgcaaaaggaagaagaaatgcttgcaaaggcagaatcagtggacgctgttcaacaatccattaccacttacaaggccaaaattgaggacctggaacatgaaatccagaaacttatggctgaaaagaatgatcttgagatcaaggctgaggaagccttgcaagattcagggaaaaaagacttcaaggacgagattcatgttatggctgcatcactctccaaagagatggaattgttggacaatcaaatgaatagatccaaggatgcggcttctgaagcacttgcactacgtgaggaagctgactatttaagaactttgctagctaagaagattgatgaacaaaaggagatatctgatagatacaacacacaagtcaccgagatcaaatccctcaaagcattgattgagacactggaccaggaaaagcaggagttacaatttatagtggatatgctcggtaaagaatgttctgagtcgagggcaatttcagagattgaagaatcagaaaaccgagctcgcaagcaagctgaatatttgagaaaatgtttagaagagcataatcttgaacttcgagtaaaagcagcaaatgaagcggaaactgcatgccaacaaaggctttcaattgctgaagcagaactggaagacttaagggccaaagtggatgcatcggaaagagatgttatgaaactcaaggagtcaataagaattaaagaagctgaagtagatggccatatttctgaaattgagacaattggtcaagcatatgaagacatgcaaacccaaaatcagcaccttcttcaacaggttgctgatagagatgattttaacataaagctagtatcagatagtgtaaagatgaagcaagcctatggttcccttcttgctgaaaagaatatgctacagaagcaacttcagcatgtcaacagttcactggagtcatctaaactaaaaatcaccagtggtgaagagcagatgaagacctatgtagcacaagctatgaaatcttcttcagagaataggcatcttgcaattagccttgaaaggactatgctggaggtatcagatgcagagaaggagctcaagtggcttcggtccgctactggatctgctgagaaagaatatgagataaatcagaaaaaaatagctgagctaaaaatggagctagagcgtgagagaaatgagaggataaagcttgaggaagaatacgaagaggtgaaaaacgaagtcagtgagctaacctcagaaactgaagagactactatacagaagctccaagatgaaataaaagaatgcaaggctattctcaagtgtggggtgtgcttcgaccggccgaaagaggtcgtgatcaccaaatgcttccacttattctgctcgccatgtatccagaggaaccttgagatccgccaccgcaaatgcccaggttgtggcaccccctttggacagagtgacgttcgggaggtgaagatctga</cdnaseq>

Protein Sequence

<aaseq>MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNT LICLNKMWNQLIDDLVLLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNS RNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSE DVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGE LEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDA VEEAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHL NAEIERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQK LMAEKNDLEIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALA LREEADYLRTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQELQFIVDMLG KECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEA ELEDLRAKVDASERDVMKLKESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQV ADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKT YVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELK MELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDR PKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI</aaseq>

Gene Sequence

<dnaseqindica>493..654#750..837#928..1158#1252..1419#1689..1882#2032..2115#2196..2315#2409..2595#2694..2854#3596..3667#4118..4194#4619..4813#5368..5440#5516..5602#5787..5924#6062..6264#6350..6512#6742..6873#gtcttccaccttgagtcgcgtaaaagaaaaagaaaaatctcccgtctcgttctcgtcgtctcctccgctccgctcgttgcgccgccgccaagacgagcaggggagggccgggcggcgatctccatccggcgagcagcggaggggaggggatcctggtgcgtcctctttctgattcatctctctctcccaccccaccgggacctggctggaacttgcttgcgttcgtgaaccctactagcttctcttctagatctcctcctcaatttgatagccttaaacatcttaattcaagcaataacagtttgtttgttcacccaaaatgtcccaagtactactgcctgacatcatctgttggctatgtgtgttatgggaggaggcagaagtctgccacaccttgttatgttgttttcgtttttcttgtggagtttactatgtagtaagttaattgcaagatatcattcatcatcatataacatccaagtagaataacagatggatgccgcagctcttcagtatgagaaccagaagctggtgcagcaattggaggcacagaagtccaaaatgcgtgcattggaaggcaagttcaaggagctgagggatgagcaatgttcttacgacaatacattgatttgtttgaataaaatgtggaatcaggttcattcatctgtctttcatactgatgtaaattctattcgatgcatttttttttccagttcaatatgtttctgatgcacttctgtgaattatagctgattgatgatttagtgctgcttggggttcgagctggtggggatttaaacggtttgcaagcgcttgatcatgaagagatgtcagaaggttggctacttggctacttgttttactttgctctctgaggtttgtttttctttcagtactgtcattgactattctttctctattccgcagaatctcttgagtcatgtccttctgaggagatatttctcttcagactcttgaattccaggaatttcagaaataatgatgacagtagcctgtcaaaattagttgaggaagctcttgccttgcgctattcaacaacagttactctgatgaagtccctgcaagaggcttttgctgtacagcaggctagaagtgaatctttatcattagctttaaatggacagaactccagtgaaggtaaagatgaaagcaatatttgtgcccttcttttttttttttggtctaacattgcaactctattatttaatcaaataaatttatttccttcagacgttattgtggcccttgaaaaccataatgattacttgaaagaagtggttgacaatttacgtcaagctgtgtctatcatcaacaggaagcacgaaaagtatctggatgagattgaggctttcaaaaacaatcaatcaagagaactacatgaagtaaagtgtctttcaggtgttaaagaatgccacttcttcccccatttgtgttggtttgtttaaaattttgctgcattgcatttatgttgatctattcacagtttttggctgttgtctcatgtactaaatgtaaatcagttctactaaatttaaaaacaccattttttaaaatagcttgattgcataaaattgtattttggcacataccctgactttgcattttggattggattactcttgcacaccaaaacaacctgtaatgcacattcatatgttgtattttaggtgagctagaggaaagcatggcagagcttgaggaaagccgtcgaaagttggctgttctccagttgcaaacgggtggaggctcactgatgaacacatctgctcctaacggtgtgaacggtagtgtttcaactgataaatcttcagacaagggtatgggctggcgagatctgaaagatgctgttgaggaggctaaggtactgtgataagacattattattattattattttcttttcaagttttcatggatgctttgaaggctgaagagtgttattttctcacttcttatcttattgttgtttttttttctttcttttcctgctaatttctcctatggagatcagactcttgctgcaaaccgcctatttgaactccatgagactcaagaggataatctgatactatccaagcagttggaagatattcaggttcatacctttttaatttttctgatttgagttcgctttcttatttctttttaatttgcgcttctttgctatgtgtgcaggatcaattaaaagatgagaactatattgttacatcaaaaccatatacgattctcagtgaccagttacaccatctgaatgctgagatagagcgatacagggggttagttgaagtgctacaggtatgctgcttttcctcagttgtgctgttttacaatggtattgttgtttgatcaaacccctgccccccccccccccccccccccccgagttagaatgaaaaggaccagctcatgcaaaaggaagaagaaatgcttgcaaaggcagaatcagtggacgctgttcaacaatccattaccacttacaaggccaaaattgaggacctggaacatgaaatccagaaacttatggctgaaaagaatgatcttgagatcaaggctgaggaagccttgcaagattcaggtagagtggacctgatcacatttatagcttgctagctggggatggctcatctcttcgtgaagagcgtaacataagtttttcttaattccactgtatagggaaaaaagacttcaaggacgagattcatgttatggctgcatcactctccaaagagatggaattgttggacaatcaaatgaatagatccaaggatgcggcttctgaagcacttgcactacgtgaggaagctgactatttaagaactttgctagctaagaaggtatttctttgatttgggtaaccatatctttctgttttctgtgatggtctccaatctgcatctattacggtggtttggaattttcttaggcttctgtaaattttgttctaccttctaaaaacatcatttatatctcttccttgcaatttcatgcacttgttcagttgccatcgattcattatgttgcattcccccgtttcagctcatgggacatttttccataaattcaccatttaaattcaaggaacaagtgcatttatattcactctgatggtctccacagaactgtccatggctatattcaaaacagtatttttcacactaaaactggcatacatacttgttccatttttctcttcaaggttgatgatcattttacacaatcagaatgaacttaatgctccagggtaccttcttgtcaccaggtgctagcatggtcatgcataaatgattttaggtccctttgaattcatttacttcatgatattgattctgtaaatattcatggcaaaactttgttttttgttttgtttttttttttttggggggggggggggggtatgtgtgtgtgtggatgctcttatgcatagttgtggacttggtgtttaatgttcaaatacattgttttttcagtagtctttacctgattaggcctccatgtgttgcgttcttcttgtgataatagctatctgaacctctaatacaattaaaacatctgattgaagtgtctggagttttcagattgatgaacaaaaggagatatctgatagatacaacacacaagtcaccgagatcaaatccctcaaagcattggtaaagtatcctgatcttcaccttttcttctagggcactgatttgcaacaatcgaatggtcagccaacatataatgatatttaggtttcatcattcagaaatgaaggcagacctctctattaactggtggatagcctgatacatgagagcttataattcttggaattgggtatcctaggtcctaaaactattgttcaaattttagcctaaaattagattagccactttattttagcctacaaactccatattctgcagaaatccatgagttcgagcattcccaaacaggcccttaactgctattactgttaaataattgaaaatttaattgtcattcacagtgtgcataaatctgagcatcatttgtgggtaaaagatgttttggaacaaaaatgcaattaacagggcttctagttctgtcattcatttttctccatataatttcaacagattgagacactggaccaggaaaagcaggagttacaatttatagtggatatgctcggtaaagaatgttctgagtcgaggtataatttgtttgctagtaccttttctgctgatttatgattgttatgggttgtattgttctcaaaagtggtgaaccctcatcatctattcttaaaaattctttatcagtaatacacaaaagactcgtgtataattgcattaagattgggaaacgaaatttcagtacacttggtctagatgcacaaccacatcagacccaaaaagaatacgaaaagaaaaggataaacagacactcacgcaactgaatcatgcgacctattcatttaatatttaagcatgttcaaaaaaacagatatggttctaagatagtataggtaaaaacatatcttgttaggaaattttcagctttcatctatttgacatgcatattacatatggtagatccttccagtttgtttcttaccatactctgttgtgcactagggcaatttcagagattgaagaatcagaaaaccgagctcgcaagcaagctgaatatttgagaaaatgtttagaagagcataatcttgaacttcgagtaaaagcagcaaatgaagcggaaactgcatgccaacaaaggctttcaattgctgaagcagaactggaagacttaagggccaaagtggatgcatcggaaaggttagtattggtgaaaattttgttttctcaacccctccgtgcaaaattgttctccagtttattgggacttgccttttcaaaataattctccattgagggaatttatagtgtagttgtattctctaaccctgctatccataccaagtaccctatttaacaaggggttaatcagactctagaaaccgggggaacttctatacacgaatctggacatagcctctgtccagattatgaacgttgctttttttctgggatgaagggagtaaaaaataatatgtgctggcttgggggctctaaactgtcctggatgaaaattgtagttgaccagctctcaattctagcccccattttccccaccacacaagcgcacaccaactcccaaaacaaaaaagatccctaaacattactttgatcttttgtctcccttgttctgtgagcatagactatgtggacaactatattgaaatgagtagttataatttgatatagctcaacaatcttcaattagtttcctgcattgaatccttttcatcacacgcattctgttttgccagagatgttatgaaactcaaggagtcaataagaattaaagaagctgaagtagatggccatatttctgaaattgaggtaggcgcggttttctcttcttatcagcagtcctttttgtgtgtgaaataaaagcatatgatattgtcattgcagacaattggtcaagcatatgaagacatgcaaacccaaaatcagcaccttcttcaacaggttgctgatagagatgattttaacataaaggtatttagatatccatcaatcttgttgcttgcctttgtagagttcctggtagtctgtagcaccttacacggctagtaggtgcagggatttatagactgttctagattctagaaccaaagctaatctgctcttttttccccaatcacaagttggttcctgtcctaacatggttctcatctaacagctagtatcagatagtgtaaagatgaagcaagcctatggttcccttcttgctgaaaagaatatgctacagaagcaacttcagcatgtcaacagttcactggagtcatctaaactaaaaatcaccagtggtgaagagcaggtagccttttatttatgcctaaagtcgttctttctgcgtaaggcccttggagatattgttaaaacaagtgttgatttacaagaaataaattgaagatgtatcggattacttgcatcttatactattaactgttacagatgaagacctatgtagcacaagctatgaaatcttcttcagagaataggcatcttgcaattagccttgaaaggactatgctggaggtatcagatgcagagaaggagctcaagtggcttcggtccgctactggatctgctgagaaagaatatgagataaatcagaaaaaaatagctgagctaaaaatggagctagagcgtgagaggttaggctgctctgaactccaggattggtcatgctatgctgccatcaccatcatgtgttcattacattttttttggttaattcagaaatgagaggataaagcttgaggaagaatacgaagaggtgaaaaacgaagtcagtgagctaacctcagaaactgaagagactactatacagaagctccaagatgaaataaaagaatgcaaggctattctcaagtgtggggtgtgcttcgaccggccgaaagaggtgatgggccattgggccactgaatcaacttattctggattatgtcgatttgtctctgaacctagatgtagatatctgggatttaattattatttacacccatcacaaattcacgtttctttgttatactcttacatgcgacagccaattctgttaccgccgctgatggcatttctgttcctttctctcttttttcttcttcttcttcttcttcttttttttttggcaggtcgtgatcaccaaatgcttccacttattctgctcgccatgtatccagaggaaccttgagatccgccaccgcaaatgcccaggttgtggcaccccctttggacagagtgacgttcgggaggtgaagatctgaagcgtcagcaaaacagcttgaatgactgacttggtagcgagcatgtaaatatatagtagtagtgctagtttctgttttcttggaggacagatattagatcgaattgtcttggtgtgcctctgccaagactgccatgtagaaactattattattatcacctaaaaatagtgcaattgcggggatc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0565600, RefSeq:Os10g0565600