Os05g0521500

From RiceWiki
Revision as of 10:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0521500| Description = Peptidase S16, lon N-terminal domain containing protein| Version = NM_001062611.1 GI:115464952 GeneID:4339355| Lengt...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0521500

Description

Peptidase S16, lon N-terminal domain containing protein

Version

NM_001062611.1 GI:115464952 GeneID:4339355

Length

5465 bp

Definition

Oryza sativa Japonica Group Os05g0521500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26003682..26009146

Sequence Coding Region

26003822..26003979,26004533..26004606,26004691..26004768,26005464..26005576,26005651..26005716
,26006526..26006627,26006710..26007259,26007486..26007691,26008413..26008576
,26008702..26008855

Expression

GEO Profiles:Os05g0521500

Genome Context

<gbrowseImage1> name=NC_008398:26003682..26009146 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26003682..26009146 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggactgggacggggtcccggcgagggagcggcggcagatggaggagatcctgcagctcgatatggaggagctcaacgtggagatggtcaacgacgacggctcctcctccgaggaggcgaacggcggcgacgacggcgccgacgccttcctcagggaaggagtggctagcacttctggacaattcacattcaacacatctctagcctcgttgcacacctatcttggtgaggttgatgatacacggggtcgagtttctctcttagatggtggcacaatcctcagcttgccaatgctatatcttcaaggtgttgtcctatttcctggagctaccctgcctctcagactaattcagggtagatttgtagcagctgttgagaaagctttgaggcaggtcgatgctccatgcacaattggtgtggttctcatgtacaagcgacacagtactcgacattatgctaatgcttcagttggaacaacagccgagataagacaacttgggaggatggatgatggttcattaaatgttgtagcccgtgggcagcaaagatttcgtctgaagcgtcattggatggatgttgatggggtggtgtggggtgatgtccaaatcattgaagaagatactcctttaagaaccccaagggatgcatttgcacagctagcatcatgtaacagtttacggcagcatacctcctcaccagttatcagtttggatgtctctccaatcaaacaacgggatcatgtggattcagaattggattgtggtacaccatcacctaaaagcactgcaagcaatcattcagcgattgattcaaggatgtgccattcagattcacgatccagcagttcaatgagatcttctaatgaagatgggattttcatgcatgagcagttttacagccaggagctacatcctttaaaaggaagtgcagcagttcagtcaggcgagaataccaacatgggtgaggaggatttttgtttaacatcgctcagatccttgtcaagtgcaggaacaagagatactaaggagcagcgtcagtacattcttccaaagcaacattttcaggcaccattatcattttggcctcggtgggcttatcaaatgtacgattcatatgcacttgctcgtagggctgcagacctctggagacagataatcacacacccaagcatggatgattacgtgagaaaaccagatcttctgtcattttccattggaagcaaacttcctgtatcagaatctgtgagacaaaagctactggagattgatggaatctcgtatcgtcttcgaagggagattcagcttctcaaggcctttaatctcataaaatgtagatgctgcaagtctctcatagcaaagcgtagcgacatggtagtgatgtctactgatggtcctcttggtgcgtatgtcaatcctcacggttttgtccatgaaacaatcacagttagcagggcaactgggcttgctcttgatggcaatccttcaacggttcacagctggtttccaggatactcgtggacgattgcatcatgtacggactgtgagtccaacataggctggttgttcaaagcaaccaagaagaatctgcgaccgagatccttctgggggatccgtagctcccaaattgcagatgatgcacaagaactagatcaggacgaatga</cdnaseq>

Protein Sequence

<aaseq>MADWDGVPARERRQMEEILQLDMEELNVEMVNDDGSSSEEANGG DDGADAFLREGVASTSGQFTFNTSLASLHTYLGEVDDTRGRVSLLDGGTILSLPMLYL QGVVLFPGATLPLRLIQGRFVAAVEKALRQVDAPCTIGVVLMYKRHSTRHYANASVGT TAEIRQLGRMDDGSLNVVARGQQRFRLKRHWMDVDGVVWGDVQIIEEDTPLRTPRDAF AQLASCNSLRQHTSSPVISLDVSPIKQRDHVDSELDCGTPSPKSTASNHSAIDSRMCH SDSRSSSSMRSSNEDGIFMHEQFYSQELHPLKGSAAVQSGENTNMGEEDFCLTSLRSL SSAGTRDTKEQRQYILPKQHFQAPLSFWPRWAYQMYDSYALARRAADLWRQIITHPSM DDYVRKPDLLSFSIGSKLPVSESVRQKLLEIDGISYRLRREIQLLKAFNLIKCRCCKS LIAKRSDMVVMSTDGPLGAYVNPHGFVHETITVSRATGLALDGNPSTVHSWFPGYSWT IASCTDCESNIGWLFKATKKNLRPRSFWGIRSSQIADDAQELDQDE</aaseq>

Gene Sequence

<dnaseqindica>141..298#852..925#1010..1087#1783..1895#1970..2035#2845..2946#3029..3578#3805..4010#4732..4895#5021..5174#acagaaagctgggcctcgacccggcccagaaaggaaggaaggggaaaccaacccaaatctcgcttgcgcgtcaggccggcgtctccgtgattctccccgtcccgcggcgcaccggcaccggcaccggcaccggcggcgagatggcggactgggacggggtcccggcgagggagcggcggcagatggaggagatcctgcagctcgatatggaggagctcaacgtggagatggtcaacgacgacggctcctcctccgaggaggcgaacggcggcgacgacggcgccgacgccttcctcaggtcgggcgacgcccctccctcgtttcgccatttttttaccctctctgatgcgacctagggttctctaagtagaaactgggtcgcagcgtacttggttacctgctaggggtggtggtactgtgcatttctactaggattgaaatacgtcaacctaagaattcaattcaaccgatagcatttcctgtccgagagagtgaggatgggaggcgttagcttatgatttgatgtttgtttccctgatctcgcatgtggaggattggtgatttcagctcgggtagactagagagcgtagggatttgagggaagggggttactaggggaagccacgatccttgtcagtgtgtacccttgagccttgaccaaagtttcactttgggcatattgatttactctctgattttttcaatttattggtgggtgtgctgtgtgccacgatatatctgtagctcatggccagatacctggaaaatttttgtttgttagtcttaactatggttttgagagatttcacattgttcatttcctaattcctgattatcagagataccgacagggaaggagtggctagcacttctggacaattcacattcaacacatctctagcctcgttgcacacctatcttggtggtaaatgtcctcgctatccttgctatatgatgtttgatgctgatagaaaagaaagtgtaataagactctttatgtgtcactcagaggttgatgatacacggggtcgagtttctctcttagatggtggcacaatcctcagcttgccaatgctatatcttcaaggtaggtcttgtatgtttgtattttatttcgttaatccgcaatcttgattatcatgccagcgttgaagacacactaattagtgatcacaatttttttttcatgccatcatttctccatattattttgtctgcatgccagcccttctaagttacattcttttcttttgaactcacttgacataacctggtctattaacgtatccactgttattgttaatgttaaaaagagcttgagcaatactactatctatttatatagacttattatttcagaggaattgcacataccatttttagtcactatttcctttatattgcagttatacagccatgtgaatatacggagtactttgtagtgagtttaggacctgaggtttcttttgataattgataatttcttaatgcatatgactagagaagtggcatccaataatctaaaaggctacaagcatccctaaacagtgttgttatgtcgacatttttctgttccagtcctgcgggttcatgatacaattggatattaactccatgggcagtgaaatatattcttaattttaaatctggaacataagaacaggcacaaatccttacctgtctctctcctgactaatgcataacagtgatagtgtaaatgcgacaggatttttctggtaggttatcaagcatcaaatttattataatatgaatttgtttcaggtgttgtcctatttcctggagctaccctgcctctcagactaattcagggtagatttgtagcagctgttgagaaagctttgaggcaggtcgatgctccatgcacaattggtgtggtaggtgccagtctgttgaaattaactaattttatttgttgaattcctttccaatgacgcagtttaattttcaggttctcatgtacaagcgacacagtactcgacattatgctaatgcttcagttggaacaacagccgaggtgttgtacattttctctgctgtgcttcaagttagaatttgtttatcagttagtcattttcaccgattcttcatgtggtttggttgttttctgtgctgccaattgagcttttccgtagccagttccatcatccttgggtgatttgttattatttctacaggacacataagttaccctctcgtcacattttgtaattaagatgatctgcttaataaataaaaacatgagggagttaatttatatcattcaagaatcaggacccagtcttagcagttagcatttaatatttcttgtaaatgggacaattgaatcattcatttagaatagactgatatccaatatttcagaatttccttcacttggtcacaatatctctatcaaacttttggagaatcatgtactcatctagttttctgatacttcacaagatctagaagaccaacagaacatataaagccccatcgtttggcttatctgcggaataagccaaacggcgtatttgcaaacgaaaagtaatttgtgaataaaacttttatatacgtgtccttagtgatctaaaagcaaaggctgaaaaataaacttcgatgagaaaacctcaaaatcggcttcaaatttaaggttgaaaattcaaattttggctgataagcataagcataagtgaaaagatgaggccgatatgcactgtgatgtcttgtttacatgtcaagctcggtcattagccccttagtatgatttatgtataaagtgatgtataattcctttcgaacagcctcacaaggtaagctggtattttgttatttctttaacagataagacaacttgggaggatggatgatggttcattaaatgttgtagcccgtgggcagcaaagatttcgtctgaagcgtcattggatggatgttgatggggtggtaagtataaatttaattgaagatatattattctgaattaggagctggagagaagttaggttcattttttctcactcaacaggtgtggggtgatgtccaaatcattgaagaagatactcctttaagaaccccaagggatgcatttgcacagctagcatcatgtaacagtttacggcagcatacctcctcaccagttatcagtttggatgtctctccaatcaaacaacgggatcatgtggattcagaattggattgtggtacaccatcacctaaaagcactgcaagcaatcattcagcgattgattcaaggatgtgccattcagattcacgatccagcagttcaatgagatcttctaatgaagatgggattttcatgcatgagcagttttacagccaggagctacatcctttaaaaggaagtgcagcagttcagtcaggcgagaataccaacatgggtgaggaggatttttgtttaacatcgctcagatccttgtcaagtgcaggaacaagagatactaaggagcagcgtcagtacattcttccaaagcaacattttcaggcaccattatcattttggcctcggtgggcttatcaaatgtacgattcatatgcacttgctcgtagggctgcaggtaaagtgctcccatattcatcaaactgagccttacaatgcattcttgtcattcatggattcttagcccaacgattgtaaattcttatgttttatagataccactccactagtgtttcccatcaaaaaagaacttcttattggatgattgatcgttttgagtgttattgagcatctcgctctgtatgtttattttaaccaaaatacactattgtcatttgctgcagacctctggagacagataatcacacacccaagcatggatgattacgtgagaaaaccagatcttctgtcattttccattggaagcaaacttcctgtatcagaatctgtgagacaaaagctactggagattgatggaatctcgtatcgtcttcgaagggagattcagcttctcaaggcctttaatctcataaaatgtagatgctgcaaggtaactatctaccatgtttggaattgctaatttatcgagcttctgattggaagtaatggacttattgttggccatttcgttactactttaaaagaaggtgaattgtttatggtggtgttgtatgttaatcatatgagtctgtcacccgacagctcaccattgcaattttttggacaaccccttaatttttcttgaattgcacagtagttaaatatctaactgaatacacatacacagacacacagtatatgagttggtctataatcaaggagtttaagcactgtcaagttctccctgtagcgaagttataattctgttaattggtatcaaccacaagtatttagctagttttccatataaaatggataactattctaggtcatctgtatcgtagcaatttcatttaccatgtcatggcctgctaaattatctgtatgtacatcccattttcatttttcagcagggtatgacatggtacagtttgtcgttgtagaatgctgcagctgcagcattggaagaattagcactaacataaaatcaaactacttgatagttcatattgatttgctgattaggctcatttggctgctaggaaaacaatgctccatgtaacctggttttcgttgatcataaacattatttggaaatggcgtgtagttacatcaaagaatttcaatacaaagtttatcactctgtgttgacatgatttgaactatggcagtctctcatagcaaagcgtagcgacatggtagtgatgtctactgatggtcctcttggtgcgtatgtcaatcctcacggttttgtccatgaaacaatcacagttagcagggcaactgggcttgctcttgatggcaatccttcaacggttcacagctggtttccagggtaaatctacagtttctccttgttctttgtaatcttcatgtccatcatacaccctttaactgtaaaaaactaagttcatgcatgattttcttcttgtaaccaactttgtttctgctgctatgcagatactcgtggacgattgcatcatgtacggactgtgagtccaacataggctggttgttcaaagcaaccaagaagaatctgcgaccgagatccttctgggggatccgtagctcccaaattgcagatgatgcacaagaactagatcaggacgaatgatgctccgtgtacagtagtaaactttgtgtgcccctccctttttcttatgaagttatggaaaacactttattctctggtccataggcctagttctccgtacctgagtagtggtcgttgtgacgatcgctatagaataaccacttcctcctgtgtgtattacacaaccattgccttatgctaaagttccgtcacagaattttctgaaatgtagtgttactagaaatccatagtacaagatgaatgatgatatgatcagatgtttcaagcaatggtttgacatgtcttatgagc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0521500, RefSeq:Os05g0521500