Os05g0533600

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Revision as of 10:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0533600| Description = Similar to Starch synthase IVa (Glycogen (Starch) synthase-like)| Version = NM_001062677.1 GI:115465084 GeneID:433942...")
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Gene Name

Os05g0533600

Description

Similar to Starch synthase IVa (Glycogen (Starch) synthase-like)

Version

NM_001062677.1 GI:115465084 GeneID:4339426

Length

8172 bp

Definition

Oryza sativa Japonica Group Os05g0533600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26547058..26555229

Sequence Coding Region

26547139..26547263,26547759..26547867,26548396..26548471,26548561..26549506,26549598..26549649
,26549979..26550101,26550178..26550253,26550342..26550526,26550649..26550840
,26550929..26550997,26551779..26551988,26552267..26552392,26553636..26553785
,26554317..26554378,26554462..26554537,26554609..26554779

Expression

GEO Profiles:Os05g0533600

Genome Context

<gbrowseImage1> name=NC_008398:26547058..26555229 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26547058..26555229 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtgcttggcggcgggcgccgaggcggcccctctcctcttccggcggcggctagcgccgtccccagtcgccgcgcgccgccgccttctcgtgtcgtgccgagctcgccgccgcggtctcaggactgctgcagaacttcctcggaagagtacaagtaatgataaacaccataatagggtgaatatgcagagagatgaagcatctgtttccagtgataaagaacggcaagagaaatatggagatgaaaatggtatatcaaaccttcaattggaagatttgatacaaatgatacaaaacactgagaagaatataatgcttctgaatcaagctcgtcttcaagcattggaacatgttgaaacagttcttaaagaaaaagaagacttacagaggaagttgaaaattttggagacgagattgtcagaaacagatgcacggcttaagctttcagctgaagggcagttcggtactgagattaatgactctctaccagtactggaattagatgatataaaggaagagaatatgctactgaaggatgacatacaatttctgaaaacaatgcttattgaggttgctgagacagagaacagtatattcacattagagaaggagcgtgctcttttagatgcttcgcttagggagctggagtctagatttatagatgcccaagcagatatgttgaagtctgatcctaggcagtatgatgcatggtgggagaaagtagaaaatttgggggacttgcttgagactgcaacaaacaaagtagagaatgctgctatggttctgggacgcaatcatgatttggaagataaggtcgacaaactagaggcatcgttggctgaagcaaatatatcaaagttctcttgttattttgttgatcttttgcaggaaaagataaaatcagtagaagagcgcttccaagtatgtaatcatgaaatgcattctcaaattgaactctatgagaattcaatagcggaatttcacgatattcttagcaagctagtggaggaaactgagaaacgatcactagagcattcagcaagtagcatgccttcagaattgtggagtaggatatctcttctgattgatggttggttgctcgagaagagaatatcctacaatgatgcaaatacattacgggaaatggtcaggaaaagggatagttgtcttcgggaagcatacttgtcatgcagaggtatgaaagatagggaaattgtggacaattttctaaagatcacattgccagggactagttctggcttgcacatcatccacatagcagcagagatggctcctgttgcaaaggttggtggtttggcggatgtgatatctggtcttggcaaggcacttcagaaaaagggccacctagtagagattattcttccaaaatatgactgcatgcagaatgaccaagttaataaccttaaggttttagatgttgttgtacaatcctactttgaaggaaatttgttcaacaacaaaatatggactgggactgttgaaggccttccagtctattttatcgagccacaacatccagcaaaattcttttggagggcacaatactatggagaacacgatgactttaaacgttttgcatacttcagccgtgcagcactggaattactttaccaatcgcagaagaaaattgacatcatccattgccatgactggcagactgcatttgtggcacctctttattgggaagcatatgcaaatctgggcttcaactcagctagaatttgcttcacctgccataattttgaatatcaaggagctgctcctgctcaagatttagcatgctgtggccttgatgttcagcaacttgatagggaagacaggatgcgggacaattcacatggcagaataaatgttgtcaagggtgcaattgtgtattccaacattgtgacaactgtatcaccaacatatgcactagaggtgcgatcagagggtggacgtggactacaagattcactcaaattacattccaggaaatttgttgggatacttaatggaatcgacacagacacatggaatccttcaacagatagacatctcaaggttcaatataatgctaatgatctccagggtaaggcagcaaacaaagcagctctcagaaagcagctaaacttatcttctacaaatgcttctcaaccactggttgggtgtattacaaggctagttcctcaaaagggtgtacatctcatcaggcatgcaatatacaaaacagctgagctaggaggacagtttgttcttctgggctcaagtccagtaccacacattcaaagagagtttgagggtattgcagaccattttcagaacaataacaatatccgactgcttttgaagtatgatgattctttatcccattggatttatgcagcatctgacatgttcattgttccatccatgtttgagccatgtggcctcacacagatgattgccatgagatatggttctgtgccgattgttcggaaaaccggtggattgaatgacagtgtcttcgatttcgacgacgaaacgatacctaaggagctgcggaatggctttacgtttgtgcatcctgatgaaaaggctctaagtggtgcaatggagagagcgttcaactactacaatagaaagcctgaggtctggaaacagctggtgcagaaggacatgaggatagatttcagctgggcctcttcagcttcccagtacgaagatatctatcaaagagcagtggctcgagcgagggcagcagcatga</cdnaseq>

Protein Sequence

<aaseq>MACLAAGAEAAPLLFRRRLAPSPVAARRRLLVSCRARRRGLRTA AELPRKSTSNDKHHNRVNMQRDEASVSSDKERQEKYGDENGISNLQLEDLIQMIQNTE KNIMLLNQARLQALEHVETVLKEKEDLQRKLKILETRLSETDARLKLSAEGQFGTEIN DSLPVLELDDIKEENMLLKDDIQFLKTMLIEVAETENSIFTLEKERALLDASLRELES RFIDAQADMLKSDPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDKL EASLAEANISKFSCYFVDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSK LVEETEKRSLEHSASSMPSELWSRISLLIDGWLLEKRISYNDANTLREMVRKRDSCLR EAYLSCRGMKDREIVDNFLKITLPGTSSGLHIIHIAAEMAPVAKVGGLADVISGLGKA LQKKGHLVEIILPKYDCMQNDQVNNLKVLDVVVQSYFEGNLFNNKIWTGTVEGLPVYF IEPQHPAKFFWRAQYYGEHDDFKRFAYFSRAALELLYQSQKKIDIIHCHDWQTAFVAP LYWEAYANLGFNSARICFTCHNFEYQGAAPAQDLACCGLDVQQLDREDRMRDNSHGRI NVVKGAIVYSNIVTTVSPTYALEVRSEGGRGLQDSLKLHSRKFVGILNGIDTDTWNPS TDRHLKVQYNANDLQGKAANKAALRKQLNLSSTNASQPLVGCITRLVPQKGVHLIRHA IYKTAELGGQFVLLGSSPVPHIQREFEGIADHFQNNNNIRLLLKYDDSLSHWIYAASD MFIVPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPKELRNGFTFVHP DEKALSGAMERAFNYYNRKPEVWKQLVQKDMRIDFSWASSASQYEDIYQRAVARARAA A</aaseq>

Gene Sequence

<dnaseqindica>82..206#702..810#1339..1414#1504..2449#2541..2592#2922..3044#3121..3196#3285..3469#3592..3783#3872..3940#4722..4931#5210..5335#6579..6728#7260..7321#7405..7480#7552..7722#actccgctactttttccaaccgtcgccccacgcgaaccccgacgccgcgccccccttccccagcctccgcatccgattcccatggcgtgcttggcggcgggcgccgaggcggcccctctcctcttccggcggcggctagcgccgtccccagtcgccgcgcgccgccgccttctcgtgtcgtgccgagctcgccgccgcggtctcaggttggtagcccagagcgcaggatcgcgtggttgcggcgtggtcggtgcacccggttgtgattactggtgtgttgcgtggtctcgttcgttcgttctcagtagtctgctcctgcggcgaaccgggggaatggccttttggggtttgggttgggttgggttgggttgggtgacaggggatcgaggaattcaattcccttggtggtgcgtgcttgtatgcatagaatgcttcgatcgtgaccaagtggggatcatcaacctctgaatgctgctctcctaatattgtttggcttaggttctgaaatgcttcttaatcaccggaatgttccacctatctgagaaaatatcctagcttatgttgtgtaatcatgatcattgatcaaatcatcagaaatcgatactgtcggaacgctttatatttgtacatttttgttgttttgattcatagaatatgtcaagaaattctgttaagcttagcttcatttttgcgggttctaggactgctgcagaacttcctcggaagagtacaagtaatgataaacaccataatagggtgaatatgcagagagatgaagcatctgtttccagtgataaagaacggcaagaggtaccacagcacattcattagcaatttcatatgttttccgattttgtgagattgatataatatttgggccaatttcacgatactatgtatgtggtgtagattgaagtccccaaacactcaatatcccccttttaatacaattttctgtgtttttatattatttttacataagaaactgaagtgaaacacattgtcactaaactagctaaacaatttaatatccaaaggcaatacctgatattggcaggctatcttcacagaaaaatgccgggtcggccaaaggttggccgaccaatttcttaagattggggagaaaaacaaaggaatgttacagcgacattacaatgtcgcgctagtccgggagagatcccagacacagcgtgaacaagcgaaagagaaagagacaccatggatgcagtagttatcatgaagttactgtttgcgtcaatttcgtctttatttttatgtatgctcctacttgttcactgttgcttcttttaatattttgggctttgtgtgtttcaacagaaatatggagatgaaaatggtatatcaaaccttcaattggaagatttgatacaaatgatacaaaacactgagaagagtaaggggctcctttcttttggataaatgatatttataatgttgtaggcatgcacataataatcattatcttcaaacgtatttgtttagatataatgcttctgaatcaagctcgtcttcaagcattggaacatgttgaaacagttcttaaagaaaaagaagacttacagaggaagttgaaaattttggagacgagattgtcagaaacagatgcacggcttaagctttcagctgaagggcagttcggtactgagattaatgactctctaccagtactggaattagatgatataaaggaagagaatatgctactgaaggatgacatacaatttctgaaaacaatgcttattgaggttgctgagacagagaacagtatattcacattagagaaggagcgtgctcttttagatgcttcgcttagggagctggagtctagatttatagatgcccaagcagatatgttgaagtctgatcctaggcagtatgatgcatggtgggagaaagtagaaaatttgggggacttgcttgagactgcaacaaacaaagtagagaatgctgctatggttctgggacgcaatcatgatttggaagataaggtcgacaaactagaggcatcgttggctgaagcaaatatatcaaagttctcttgttattttgttgatcttttgcaggaaaagataaaatcagtagaagagcgcttccaagtatgtaatcatgaaatgcattctcaaattgaactctatgagaattcaatagcggaatttcacgatattcttagcaagctagtggaggaaactgagaaacgatcactagagcattcagcaagtagcatgccttcagaattgtggagtaggatatctcttctgattgatggttggttgctcgagaagagaatatcctacaatgatgcaaatacattacgggaaatggtcaggaaaagggatagttgtcttcgggaagcatacttgtcatgcagaggtatgaaagatagggaaattgtggacaattttctaaagatcacattgccagggactaggtacactttctcctttgctagtaggagtaaagcctgtttataggataatactctgtctttatttagttttacaatttattgattaatgtagttctggcttgcacatcatccacatagcagcagagatggctcctgttgcaaaggtgatccttggtactcccttcaacctttcatcacgtgcatttcatttcattactactcctgacacaaatacatttctagttagtatattttgatatggttctgctgattagatgtgaaactactgatgtgatagttgactaagggtctaattggtagcctgggctgcggctgtgctgcagtcagctgctacagtcccttgcatgcagcatggcccactgctgctgctgaggctgcagctgtagttttggaatttgatttgttgttaatgctgattaattgaaatcctatcagttactctttaagtttgcttatatgcatgattctttaggttggtggtttggcggatgtgatatctggtcttggcaaggcacttcagaaaaagggccacctagtagagattattcttccaaaatatgactgcatgcagaatgaccaagttaataaccttaaggtatatagtttgtttctcaccgaagtttttggtcgcttcttttgtttgtttaagattttatttttctatcatgcaggttttagatgttgttgtacaatcctactttgaaggaaatttgttcaacaacaaaatatggactgggactgttgaaggtttgaagcatccctcagttcgacctttctgtaaaattaagtcataacattgaatcttcatcgacctgactaaatttagcatatgcaggccttccagtctattttatcgagccacaacatccagcaaaattcttttggagggcacaatactatggagaacacgatgactttaaacgttttgcatacttcagccgtgcagcactggaattactttaccaatcgcagaagaaaattgacatcatccattgccatgactggcagactgcatttgtggtacgtgtcaaatgcacttggctgtattggctaattgaccactgaaaatggatcatgctcttcttggttgatttgccaagttaaagatattaatttgctcatcttttactttgaaattccaggcacctctttattgggaagcatatgcaaatctgggcttcaactcagctagaatttgcttcacctgccataattttgaatatcaaggagctgctcctgctcaagatttagcatgctgtggccttgatgttcagcaacttgatagggaagacaggatgcgggacaattcacatggcagaataaatgttgtcaaggtactgaccattgaaaccgtgcaatagattgaattcaaatttcacctgtatgataccaacaaggttgttttgggttcattgttttcagggtgcaattgtgtattccaacattgtgacaactgtatcaccaacatatgcactagaggtgcgatcagaggtaattttcttgtaactttagttgtgtgtatttgattaactttagtttcagtagtaccttctaatggcgagattagtgtttctcaaaatttatataccagttttttttttttgtgtgtgtgcatgtgttttatgtgtgtgtgtgtgtggtggggtgggggtgggggggggggtgagagaagggaagaagaccataagttgatgcacaattcatgggaaactaccacactaccttgttgttcattatgcagtttatttattccagtggcattcctacatgaactgaaataagctgctgcatcataacatagggagttgtttaagagcttgactgcttgataaatccctttatatgtaatgctatacatatcactacatcagcatatccatagaatgcctcaactatcctggactcctggtgtttctagtttccattattcaatatgtcttataccctatattgttacaagtgttctaaaagcagtacactaggcaccaggtagctgccacgattagcatttaatggtgcattaggcgtctgcccagctttgggggctccagtgttgctatattaatgttctattgtctttcttttatgtcatatgctaattgcttggaagccccttgttaagttgatcctaggcgcacctaggcactaggcagcgtcttgccgaccatctaacgtctagtgccttctctgattagaagttcattgtagtagtttcagtttgtaagcgaagtctgttggcattctgttattgacaagctcttctggtgctcagggtggacgtggactacaagattcactcaaattacattccaggaaatttgttgggatacttaatggaatcgacacagacacatggaatccttcaacagatagacatctcaaggttcaatataatgctaatgatctccagggtaaggcagcaaacaaagcagctctcagaaagcagctaaacttatcttctacaaatgcttctcaaccactggtacgatttttaatcccctcatctactgctaaactggatacagaaattatgaccatgtacctgtacttgaattaagaattttccctcttgtcagctttgcagtttattttagctatctggttttattatattcccttttttttttcaagtatggtttacctatgtatattgataaaacagaagtgaaatatttacaaggtttattgctttctttcatttgttatagaagtttcgctttcaattcaagactaactacacactaaagtttccttgagcaggttgggtgtattacaaggctagttcctcaaaagggtgtacatctcatcaggcatgcaatatacaaaacagctgagctaggaggacagtttgttcttctgggctcaagtccagtaccacacattcaagtacattttcttctgaactatagtagggtcagctaacatgatcatatttgaatgtagagaaaaggaaataaaaaaaaaaacttaactagctcgtgaacaatctatatatctaaagctggcgggtctccccgccagctgattggtggattttgccaccatcaatctgttgacacgtgtccatttcacattggcgcgcagtaaacggatcctactaggcttcgctggtcttgcgcatcagcccacgccgattggcttgccccgcctggacgctctattgatttgctgacagatgggccatccttaaaatatcctaattattaatcctctgaaaaaacaactgagatgggccatccttaagagctacggcagcacggttagaagtcattgggaaaaatatatgcatgtaaaaacatgcatgtgaagatatatacgtgcaccaatttgaaataggaaattttaatatatatgtgtatatataagccctattttattattcgtacatatgacaaaattatactaccgtcacataataaaggatgacaatatcacaaaaataattcttattcttacgtaaaaataacaaatgtataaaaaacaatccaaaataattttaatgtaaaactgcatacctctaatcagtaaaaagaacaaagaccaaaaaatacaaactatgaaaaaagacacaaaatcaatctaaaaattatgttctaaaattttaaatttttaacaaataggctatgagagtgcttaccagtttacaacttcctttaatactattagtccaaagtatttcctccagttccataattcttgatgttttgaaaaaaaaatgagatcaaataattaatttgatgacactaaaacttggtgtggtgtacagattggttaaaatactttagtaaaattaaatattgacctatttattatttatattattatagaaattaatagtaaattatagatatatattttgaggtccatttaattgtccaggggtacagagtccccgtcaaatgtagcatttttaatgaatcttatataaaataaataaatttgggtaaaatctataaagagaaataggctaatcagccggcgtgccaaaaggcacgcctattttctagtctgtttatatggatggagcttgttttttatttgaaaaatagttgctcttgctccttttgttgaacacctctttacttattgttgctatagtgaacatgtttggtgctaatttactttgcagagagagtttgagggtattgcagaccattttcagaacaataacaatatccgactgcttttgaagtatgatgattctttatcccattggatttatgcagcatctgacatgttcattgttccatccatgtttgagccatgtggcctcacacaggtgtgcctttacatacttatattacgtagtttgtattaaatgtaaatactgaaacgtgccatttagcattatccgtaatctgtttctttatttactatgcactctatgattgtcttgataaattatattcctagatataaatatgcaatgcaagcaatttctctgatcgtacttccatcttttttttcctatttggtagaggatttattcttgccttattttttttgaggtgtatgatatatgatccaatacctcataatatgatcattgaaaacttttgaacacaattcagaagtacagagtgagaaaaataaaatgtgccaagatgtttttccaattagtcaatgaaattctgccctttacccttgaaacccacagtagaatatgttctcagatttgaagaatttcatcaacacaaaaataaacatgtttccagagctttccaaaattcatgagcacaagcttgcagttctgcaaagctgttcttggttcattcctgttgagcaattctgacatgttctgtatccacagatgattgccatgagatatggttctgtgccgattgttcggaaaaccggtggattgaatgacaggtaaatagttattaattaaccaactatctcccaatattattctccttaataatgtaaaatgcccccactcacctgctttgcagtgtcttcgatttcgacgacgaaacgatacctaaggagctgcggaatggctttacgtttgtgcatcctgatgaaaaggtggatgtcgtttcagttcatctctcctcttttggtggacacaactcatgtgggtgttccttttttgacaggctctaagtggtgcaatggagagagcgttcaactactacaatagaaagcctgaggtctggaaacagctggtgcagaaggacatgaggatagatttcagctgggcctcttcagcttcccagtacgaagatatctatcaaagagcagtggctcgagcgagggcagcagcatgaactctggcggtttagtgagacctgagcctttctctgacgcggcgcttgatgccacaggcacagattctgccttctgaagaagccgcaccatgcacctctctgatgtgcgaacatggcttcatctgcagcttcgattcttggaatggaacccaagatatttaaagacatgatccgtcagactcatgcaggaagccgagatgttccatagtgcagttatggaatggtcgaagaactaaaatcttggcacccattgtcgtgtcccagtgacagtgtggactatacagttatataacttatagtacgtgattgctcagtcgtgaaatttcactagcctcgatatatttatcatgcgctacggtgaaatgataagttttgttctttgtatcacttgcagtgtgctttgttatttgtgcaaagtcgtgtgtgttgtctatagaatattctttcgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0533600, RefSeq:Os05g0533600