Os11g0311300

From RiceWiki
Revision as of 21:18, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os11g0311300

Description

Exoribonuclease domain containing protein

Version

NM_001074290.1 GI:115485228 GeneID:4350355

Length

7581 bp

Definition

Oryza sativa Japonica Group Os11g0311300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:12025009..12032589

Sequence Coding Region

12025011..12025060,12025144..12025294,12025410..12025479,12025582..12025687,12026233..12026299
,12029751..12029826,12031325..12031614,12032167..12032259

Expression

GEO Profiles:Os11g0311300

Genome Context

<gbrowseImage1> name=NC_008404:12025009..12032589 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:12025009..12032589 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>accaaaaagaaaaccccctttgtcgacaaagccagtcccaagctcctttcccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgccccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcctccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgccagtcatctccaagaacctagaggacattctcatgagctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggttagcatacctggatgtctattgtttgaatgctgatgggtctctattcgacgctgcactaatctcagctgttgctgcatttacacatttggaaattcctttggtatctgtcggtgatgatggtagagtatttactgttgggggcaatgaaggcaaagccaaatatgaattggtaaacagagaaaagaggaagcttacgattactaatgttccattttcccttacatgtgcacttcacaaggataatgttctagcggatccaactgctgaagaagaatcaataatagagacttctgtgactattgttctcgattcttcagaccagatagtgtcaatacaaaaacctggaggtgcagtgacatctatgacaactattaaggaatgcattagcttggctaaggacaggagaagaaagttaagagaaattctcatggacaatgttgaagcaatggaagtcgaccaaactgattaa</cdnaseq>

Protein Sequence

<aaseq>TKKKTPFVDKASPKLLSRLFPLAFLERHLRESVRPDARRPAEAR PTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSP LVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKASWLAYLDVYCLNADGSLF DAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAKYELVNREKRKLTITNVPFSL TCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPGGAVTSMTTIKECISLA KDRRRKLREILMDNVEAMEVDQTD</aaseq>

Gene Sequence

<dnaseqindica>3..52#136..286#402..471#574..679#1225..1291#4743..4818#6317..6606#7159..7251#aaaccaaaaagaaaaccccctttgtcgacaaagccagtcccaagctcctttcccacccacccgtgagatggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggaggcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgccccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcctccgcccacggctccgccctcgtccgcctcggcgacaccgtacgaccccccaagccgccgctctccacccctccctctccccgccactcttcctgatttaggcgtccgtgcaccacctatttgacgaaatgcctcccgtatctgtttgcggcaggccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattggtatgtttgccgttgatttatcttctcatagtgcttttgctttgcgcgtttggctaatttatctgcgtttctattgtggcgtggtgccgtggtgttctgcagctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggccggcagaggtggcgccagtcatctccaagaacctagaggacattctcatgaggtatatcgtgccttgctgttgctccattcgtcacgtaccatgtcctttgactgaatgggcatatcattgtgctttccatgtgtataatctgcattttgcttgaatggatgaatgcctgtctgcaggagtgaatttaatttatttattttctgcagtaaatcatgctgatttgctatattgtagcaattggactttagagtttaatcatggggttcctttttaatcagcaaagtagtcatgtgaaactgcattagcacaaatggaactattgaagagtattttgttgattcgcttttagctagccaatatgatctatatgtaggattgggcatgataaaatggcagttcgtttgcatactgtacagtggggctggttcatcttgttctacttgttagtagaaaaccagaaatggggaatttaattttgtggaatcagtcttgttgatcatatgacttatctatttttctgtatgcccgtgaaacttctatatccgtttgcatacatggcatatacagaggtggctttatttaatcctctcgtgcagctcagggatgctaaatttgaaggagctctgtttgatcagtgggaaggcatcttggttagcatacctggtaatcactgatttcattattggttccttctctttgtaaggcttactgggcatctccaataagtcaaattgaaaagcttcacctgaaatctagtcgtgatacattaaataagatgcgcaaggcttctcatccttgaagcctggtccaagcatcaattgcttgctgcttgcctaatgtcaagtagtcagcaatagccttcctcaagggatgatagttattttgtcatgattgtggacattaatgtttagagcactttcatagtggtctctactggaatttatctacttccagtaatactaccagtagaaacaacctaactcacagctttataaggatcttcattggacaattatacccccattggttgtaccactggtattgagtcagtactataaacaaatatggtccgtttaatgaaaaaagccagaaggtctagatcagttctactttcaatagaaccactgtaaaagttgtccaatgttttatggctcggatgatcgacacgaagtaacttgcttgcaacaacaaacttttcatctgggacaacaaacttattattagtgaattttgtcccccagataagtcggaactaaataaatatcttatttgggctcttttcttagtgcttcctatccttaagtatttctctaaaaaagtgctgaatattttcttggaaaatgtatgaataatgatatgctttagtctgctaccctgttttccctttttcttttcccttctaggcttgtacataaaactaaatcttttagagcaaatctgctcaataccatcgcatagaaattggagttggaaaatgccatagtgaatgtgacatgctgccaaataccattcgcgaaccccacaaatgctggagaataccatcaccagtgcattttcccatgattgttaataggggtgggcataaaaaccgaggaccgaagaccagacccgaaaagaccgaacccgaacccgaaaaaaccgaaatcacggtcttcggtcactagttcggttgtacgattttaaagaccgaacttagttcggtgtattcggtcatcaggcctttccgaccgaagtaaccggactgaccgaagtggcccaataccttctcttgctcacgtatatatggcccacaagcccattagcgtagcacatatacgttcagctggtgggcaacatctctaaaaaaaaaaaaaacaagaaaggggagtagagcggcagtgccgccagtgctagggttagcagcttggcgcctgctccctcccgtctttggcggcggcgcttcatctgatccacagaggcagcgcgagatctggtggcaggacggcacaagatgatggctgtggctgctgctgaggggtctccgtcggtgcggtagcggtgaggtcatcgtcgtcgtcttgctcatatcctgcctgctgtgcgtgtgcagcctgagcgccattgtcagtagcgccgtggcctgctgtcgagaggattgtctctctcgttgatgattgtttctcctatactctctatccttcgattgttttttttttcagatttctaacacgtaatctttgaatgattgaatcccattttcttgaacgattgaattccatttttgtcagatctgggtttttgtgcttaagagcaatagttgcgtgtgtatgcttgtgatttactacctgcttcgactagcatctcatactaattttttttctcgccctcgtccctatatgcaagtctgcaatccagtgccacaaaggatacttcagtttggtcggtcagactgaagaccgagaccgaagtatcagttaaccgaactgtcggtccacaagtttcttgagacaacttcggtttcctttttataaagaccgaaaaaaccggaccgaaatgtcggtcctgaccgaacgcccacccctaattgttaatgacccattctttcttttttcttcttatatttctactaggtgggcccacattatgccttttcctcctttctcatgtgcttcccttttttctctgtaattcatatcacatagacgtgcctattcttctcatgctgcatggccacagacctcttctccccatggtgcgtggtaggatgatgccattagcgtctcccagctgccacatcctgtgaagccactgtcaccaagagcaaatgtgaggtcagatttcatgatggcgttggcgtccacccagagcatcttggccatgacagcgatgacttccgcattgggcaggtcctcaagcatggtggctggcaacatcgtactgcctttatctgtgacatggatccagcgactggagttctgtagcatgatgtaaaagggtgtggacaaagtgggaatcttagatcaccactgccacttgtcgcatttccttggtgctcaacaactgccgcatgacattagaacgtattgccaatcttgccatgtcacctccatgctgctcctgtcaatttttctctgatctcttctatatgtccataaaaatggaaccttcttgtcgtgttctatgccatgctcaccatttgttgctatttcagtcattggagcacgtcatgtgtggtcgcgcatgctcggtgcttgtcctcaatcacgctatagcagctcccagaacgtcaagagatgaggagaatgtcagataacctgtatcttttatttttatctttgtcctagtaggatggaaacattagatatggatgaaaaaagtttacggggatggtattctcaagaattttctgtgttaatggtctttggaagctttggtttcttgatgttattttcctactccaatttcctttttatggcattgaacaaatatgccccttttttaacggaaactccaacagggactttccctgctgtttccctaaaatacagttcatgtggcagcaccaaatctgttatctgcggttgcttgctgcaatagaactgagcgcatgatgtgagatttgccagtatactattattgtacctgagcattgtgataaatgccaactagtaccctgaaatcagaaaatcatatataccactagatgagattaatcaacaacctaaacgcacatatttgcaaaattgcaatttttgcagaagatattgcaatatgcaaacaacacacacatgtttaaaagaatacacttttttaatggaagatattgcaaaaatgcaagcaacacaacatttctacgtacatctgtcagctgaaggtctttaatagaggtgggtgtaaagtacaacatcaaccacagctcttgtaaaggaacaaacaatggcataaaaataagttcaggcagtgctcgtccaaaaacaagtttgcaaaaagtatttgtgttttatacaaccacagctcttgtaaaggaacaaacaatggcataaaaataagttcaggcaatgcccgtccaaaaacaagtttgcaaaaagtatgtgttttatacttctgttgttttcttgacatctcaactttacaggatgtctattgtttgaatgctgatgggtctctattcgacgctgcactaatctcagctgttgctgcatttacacattgtacgttccttatttctgatagcttatcttgatttgacatttttcactacttaattactcttcattttgaaatgtaaatatgctattgtaatatgtgctagcagttagtgctttattcagtcagtatgaatcaaattacagatttagtgcccccattaaatactctttttgataactacaaactcatggaattgcctattcttctccattagttaagcttttgggtgaactttctggtgcatgcaattcaattttgtatcactaccaagaggtcttgagttcaaatcttgtcaggcactgtttaaataaaacgctggcaagccttgtaagtgtgaggtaggagggatcctagattgacgaggagtgttaaaggataagtgaattgtccatccttctccatcagcttaagcttttggttgaactggttggtgcatgtgactgagtgttaaacatccatagttagtttaattttttattgctaatcatctaaatattgtacgcattggtttatgagacagttcatagcacattttgagattattagatgagaaccatataaaatagagtagtttaacatgtaaatattgttgatttttctattctacctagtgaaacttcaggaagaccgcaagttttttatgtatatataaaactagttaatagccataaatatatgccctcgtctatttcattttacatggcgtatagtttttcctcatttatcatatcatggcattttctgttggttttatagacttatttaatcttatgcaaactcgtatgatttcttatatgctaaataaaatagagggagtattacttgccatacttcttagatttgtaaagtttgttgacggggaaaattttcaatggaaaattctcccctaaagtaaacattgagaaacgggactcatcaagattggggtaacttgatccacattctgttttgtatcatttgaaagattgtaatgttggagtcgatgtcgtgaatgaagatgttaagtggtctttcatttaatatggtttcatgtggctgtctcacaaacctttttcttatgtttggtggtttatgtgcgtgagaagcttgcctaaatagagtaatggaaggtgtgttttgttttgaccttatgagctctgggcggagtgtggagtgaggctatatgtgatcctgttatcataaccaaccctgcattggtgaaaaaaaaagatgaaaacattgtaggtacaaagagatttttatgtacaggatattactgattatttcctggtcatttatgattcttgaaattcaacaaaaaacttcagatggcaaggcaagtcctgttagatttgacatggaagtattatctggtcaaaactcgctgctctatgcctgttcattttccattttatagaaagtttgtgcatctgaagttcttggtctgttccattttcttcatgttaacatctcaaggtgctttagttaattttcattactaatactatgttatatttgcagtggaaattcctttggtatctgtcggtgatgatggtagagtatttactgttgggggcaatgaaggcaaagccaaatatgaattggtaaacagagaaaagaggaagcttacgattactaatgttccattttcccttacatgtgcacttcacaaggataatgttctagcggatccaactgctgaagaagaatcaataatagagacttctgtgactattgttctcgattcttcagaccagatagtgtcaatacaaaaacctggaggtgcagtgacatctatgacaactattaaggtctgttagctaatccgtgcttaataaaaatttccatagtatctgtggtagtttttttttttggcttttggtaaagtattcaggcgcgaaacaggcttcatgtatttgacaacaaaggaattacatttgtatatttgattcaggacgaaatagcagctgtctgaagttagatactactgagttttatgttttggtgatatttcctattcttatactgttatcaagggttggcttgtctctctactctaccaaaatttagatgccaaaattttggcattgataaattttaatagggtgtagagatggagaactattgcttagttttgtgccaaaattatcttaatgttagaggaatatataggctctaccaaaattttgatatgctagtcttgatggagtacattttgacaaggtagcaaaccaaactagccccaagttaagcacatatattttcactaatttgttagttctatttgattctgaaaactttgcacaccatgtggcatagacaaccatttgaggatacacctgattgacctttaatttctgcaggaatgcattagcttggctaaggacaggagaagaaagttaagagaaattctcatggacaatgttgaagcaatggaagtcgaccaaactgattaagtttgtcacagttctgattcagtgaatctaaccaaattatttttgtagtagctctttcctatctcttggttgtactcgtagcgtgataaattttagcacctttggctactatccgtttaattaaataagtaacagtccgtacctgcctatgattttattgaattaaagtggtatcataattttatttgagtctgtcttatgtcttctttgtattcgtagtatgaggaattttagcgtctatctaccttcggcttaccttctgtgtttagttacacacaacaatacaagtatgtaacagtctttgcctgcctatgatttttttttcttact</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0311300, RefSeq:Os11g0311300