Os05g0539700

From RiceWiki
Revision as of 10:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0539700| Description = Similar to Nucleosome assembly protein 1| Version = NM_001062710.1 GI:115465150 GeneID:4339460| Length = 3345 bp| D...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0539700

Description

Similar to Nucleosome assembly protein 1

Version

NM_001062710.1 GI:115465150 GeneID:4339460

Length

3345 bp

Definition

Oryza sativa Japonica Group Os05g0539700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26870361..26873705

Sequence Coding Region

26870694..26870762,26870848..26871022,26871111..26871154,26871238..26871415,26871502..26871686
,26871771..26871835,26872019..26872100,26872376..26872468,26873130..26873225
,26873346..26873389,26873501..26873564

Expression

GEO Profiles:Os05g0539700

Genome Context

<gbrowseImage1> name=NC_008398:26870361..26873705 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26870361..26873705 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcgacggcaaggactccctcgacctctccggcctcggcgccgccgtccccaacgccaaagagctcagcgcggaggacaaggccaacctcgtggagtcgattaagaacacgctgcagggattggcggcgcggcacacggacgtgctcgagagcctcgagcccaaggtcaggaagcgcgtggaggtgcttagggagatccagagccaacacgatgatctagaggcgaagttctttgaggagagagctgcacttgaagctaaatatcagaagatgtatgaaccactttactccaagcgttatgaaatcgtgaatggtgtggttgaggtagatggtgtcaccaaagaagctgcagatgaaacccctgcagagcagaaagaggagaagggtgtaccagagttctggcttaatgccatgaagaaccatgaaattctgtctgaggagatccaggagagggatgaggaagctcttaagtacctcaaggacatcaaatggtacagaattagtgagccaaagggtttcaagcttgaattttacttcgatactaatccattcttcaagaactcggtgcttaccaaaacataccacatgattgatgaagatgaaccaattctggagaaagccattggtactgaaattgaatggttccctgggaagtgtttgacacaaaaggttctcaagaagaaaccaaagaagggctcaaagaacactaaacctatcacaaaaactgaaaactgtgagagcttctttaacttcttcagcccacctcaagttcctgatgatgatgaggaaattgatgaggatacagctgaacagttgcagaaccaaatggagcaagattatgacattggatctaccatcagagacaagatcattccacatgctgtttcatggtttactggagaggctgctcaagatgaggacttcgaaggcattatggatgatgaagatgatgacgatgaagatgacgacgatgatgaagatgaggatgacgagggtgatgatgaagacgacgaggatgaaaagaagggcggacgagttcctgcaggggaagggcagcagggagagcgacctgcagaatgcaagcaacagtaa</cdnaseq>

Protein Sequence

<aaseq>MSDGKDSLDLSGLGAAVPNAKELSAEDKANLVESIKNTLQGLAA RHTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYE IVNGVVEVDGVTKEAADETPAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYL KDIKWYRISEPKGFKLEFYFDTNPFFKNSVLTKTYHMIDEDEPILEKAIGTEIEWFPG KCLTQKVLKKKPKKGSKNTKPITKTENCESFFNFFSPPQVPDDDEEIDEDTAEQLQNQ MEQDYDIGSTIRDKIIPHAVSWFTGEAAQDEDFEGIMDDEDDDDEDDDDDEDEDDEGD DEDDEDEKKGGRVPAGEGQQGERPAECKQQ</aaseq>

Gene Sequence

<dnaseqindica>2944..3012#2684..2858#2552..2595#2291..2468#2020..2204#1871..1935#1606..1687#1238..1330#481..576#317..360#142..205#atcccctccgcctccactcccctctcccctcctctcaacccccacagctcgcgccgccgccgcagctagggtttctctccgccctagcctacctcgcggagacctaccacccgaagcttcgggaaccctcgcatagccgccatgagcgacggcaaggactccctcgacctctccggcctcggcgccgccgtccccaacgccaaaggttcgcggctcttctcgctctctctctagttcgatctcggttgctccgttttgttgttgttgttggtgtggttggcttatactggatttggattcggtggctgtgatgcagagctcagcgcggaggacaaggccaacctcgtggagtcgattaaggtgggggtttctgcggtggtgtttttgtttttgctgcttgctgcttctatcggggtttgggcgggcttgggaggggttttctgatgaaacttgtggtgatttcgatgtttgcttgcgcagaacacgctgcagggattggcggcgcggcacacggacgtgctcgagagcctcgagcccaaggtcaggaagcgcgtggaggtgcttagggagatccaggtataggagatttccactttccctgcacgataccttttttatggtcgtttcaaccatgcttgatgtggcactttgcacgatcctggatgattaatggttactgatgaagcgactcatactgtgattcttatgtcacttgcttaaacagcacagaatggcgtgtactagtacgagaaatttcattcctagttggggctaggactgacttttagtgtaggttgcacgcttgcttataagttggattactccggtgctcttattaattgtatgggagattctggaaaaatgccacaaactatgcgtgtgtgttactagtaactactgtaggatgactcacgtttcaacttgatgttactggtgatgccagctctagattttttttgtacttcgttgaactattttgtttcaaacccaaacgatgaatattgatattgagtccaagcagttacaaaacagtttagctgtggagtttcttgaaagccttgttcttttactttatgtgaattgtttccacctagctattgtcaggttatgttactaactcaaattgctttatctgtgctgtatcaacactaattgtggaactacaaagcacaatggttgaattttggaatatccctgttgcatctggtgctaagctgcttcgtttaatatctgccagagccaacacgatgatctagaggcgaagttctttgaggagagagctgcacttgaagctaaatatcagaagatgtatgaaccactttactccaaggtaaactatttttaatggcctgctattgcctgtgttatgcatttttgctgtctcaccctgctgtatgtttactcttaactctttgatctgttggaagcatgtatcacctcaccatggaaacaactgcttgaatagctcgcagaccttgacttttcgtttttgcatggttcatacttcatcgcctcacacaagacagatatctctaacatttgccatccctgtatcatatggatgtcatgatctgtctgagtttttttccatctgtgtgttgacagcgttatgaaatcgtgaatggtgtggttgaggtagatggtgtcaccaaagaagctgcagatgaaacccctgcagagcagaaaggttctcatattcttcctttactaacatgtttgtctattcccagttggcttaatgcttactactccttccgtcccaatatatagcaacctagggtatcccatcctaggctgctacatattgggacggagggagtagaaatcatctttttttatttttcaattaaaatttaatgcttccttgcagaggagaagggtgtaccagagttctggcttaatgccatgaagaaccatgaaattctgtctgaggaggtgagacttcgcacttttataaaacaaaattcttctaatttggtctagcatgtcttaagtttcatttgtctggctcgtatgcagatccaggagagggatgaggaagctcttaagtacctcaaggacatcaaatggtacagaattagtgagccaaagggtttcaagcttgaattttacttcgatactaatccattcttcaagaactcggtgcttaccaaaacataccacatgattgatgaagatgaaccaattctggagaaagccattgggtaactaatatttcaactcgtgaagttttactcttttagatgaatggacagtttcaccaacatatctctgacattcttgttttcagtactgaaattgaatggttccctgggaagtgtttgacacaaaaggttctcaagaagaaaccaaagaagggctcaaagaacactaaacctatcacaaaaactgaaaactgtgagagcttctttaacttcttcagcccacctcaagttcctgatgatgatgaggaaattgatgaggatacagtaagtttcatattttctgtgcatgttttaaagtttaaagcatgtattcatgggcatgcttcttatgtttatctcctgaataggctgaacagttgcagaaccaaatggagcaagattatgacattgggtatgcccttgtgtattctgttacttgcagtggctgctttctgtccagtacactgtactagttctaaatgtcccttttttgttgccagatctaccatcagagacaagatcattccacatgctgtttcatggtttactggagaggctgctcaagatgaggacttcgaaggcattatggatgatgaagatgatgacgatgaagatgacgacgatgatgaagatgaggatgacgagggtgatgatgaagacgacgaggatgaaaaggtgacggaaaactcatggttctcatgcactttctagtttcaaccaaactctttttcttactattttgctttccttcctgaaacagaagggcggacgagttcctgcaggggaagggcagcagggagagcgacctgcagaatgcaagcaacagtaagatgcttcctacctgagcgtttccaaagtccggtcctggagtgaagaagaatgtttggttcggcttgatgcaatgtctcgtccatttggtttggagagccagttggggaagtgttgggattgagttggtttagtggaactggcgggggatatttttttcgggacatggtattatatgtttggtagctttttccattgttgtattgggtcgacatatcttgtgcgaagcttatggttgagtgatgaatatcgccggtttggtattatcatattgccaataccactggcatagtgctgagaaattttgatctaggagaggcaatgtttttgtgcg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0539700, RefSeq:Os05g0539700