Os11g0448000

From RiceWiki
Revision as of 21:19, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os11g0448000

Description

Surface protein from Gram-positive cocci, anchor region domain containing protein

Version

NM_001074361.1 GI:115485370 GeneID:4350438

Length

6867 bp

Definition

Oryza sativa Japonica Group Os11g0448000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:16784633..16791499

Sequence Coding Region

16784633..16786901,16791030..16791499

Expression

GEO Profiles:Os11g0448000

Genome Context

<gbrowseImage1> name=NC_008404:16784633..16791499 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:16784633..16791499 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggagggacgcccgccgcctccccctcctccccttcctcctcctcctcctcgccgccgccgccggcgtcgccgagtcggcgaccgacgcggaagccatccacgacctggccaggtcggtcccggccctagggtgggatggcgacaacgtgtgcggcttcgagggcgtcacctgcgagcggggcggggcggggaaggtgacggagctcaacctcgccgacagggggctctccggcacgctcccggactcgctctcctccctcacctcgctcaccgcgctgcagctccaggggaacgcgctcaccggcgccgtcccttccctcgccaggatgggctccctcgcccgcctcgccctcgacggcaacgccttcacctccctcccccccgacttcctccacggcctcacctcactgcagtatctcaccatggagaacctccccctcccgccatggcccgtccccgacgccatcgccaactgctcctccctcgacaccttctccgcctccaacgcctccatctcggggcccttccccgccgtgctcgccaccctcgtttcgctcaggaacctccgcctctcctacaacaacctcaccggcgggctgccgcccgagttgtcctcgctcattgccatggagagcctgcagctcaacaaccagaggtcggatgacaagctatcgggcccaatcgatgtcatcgcctcgatgaagagcctcaagctgctgtggattcagtccaacaagttcaccggcccgatcccggatttgaacggcacgcagctggaagcgttcaatgtcagggacaatatgctcactggtgtggtgccgccctcgctgacagggttaatgagcttgaagaatgtttcactgtccaacaataattttcaggggccgaagccagcgtttgctgcgatccccgggcaagatgaggatagcgggaatgggttttgtcttaatacacctggtccatgttctccactgacaaccactcttcttcaggtggctgaagggtttggttacccgtatgagctcgccaagacgtggaaagggaatgatccatgcagtccagcctgggtcggaatcgtttgcacttcgtcggatgtgtccatgatcaacttgtctcgtaagaacttatcaggtaggatatcgcctgctttggcaaacctgactaggctcgcgaggctggatctttcgaacaataacctcacaggggtgataccggatgttttgactacattgccgagccttacagttcttaatgtcgcaaataacagactcactggcgaagtgcccaagtttaagccatcagttaatgtgcttgctcaaggaaacctgttcgggcaatcaagtggtagcagtggagggggaggtggttctgatggtgactcttcatcgtcagattctgcaggtggaggaaagtcaaagccaaatactggaatgattattggaattattgtagctgtgattattctttttgcttgcattgcgcttttggtgcatcatcgaaagaagaagaatgtagaaaagttcaggcctgtgtcaaccaaaacctctcctgctgaatctgagatgatgaagattcaggtggttggagcaaatggcattagcaatggaagcagtgcattcccaactgagctttacagccatgtgagcgctgctaacagctcaaacatttctgagctgtttgagtcccatggaatgcagttgtcagtagaagtgctgctaaaagccacaaacaacttcagtgaggactgcatcttaggtagaggggggtttggtgtggttttcaagggcaacctcaatggaaagctggtagctgtgaagaggtgcgacagtggtaccatggggactaaagggcaggaagaattcctggctgaaattgatgttcttaggaaagtaagacaccggcacttggttgcactacttggttactgcacccatggcaatgagagactcttggtctatgagtacatgtctggtggaacattacgtgagcatctctgtgatcttcagcagagtgggtttatccctcttacatggacgcagagaatgacaatagctttggatgttgctagggggatagaatatttgcatggcttggcacaggaaactttcatccatagagatcttaagccctccaatatattgttagatcaagatttgagagctaaggtttcggactttgggttggtcaagcttgccaaagatacagataagtcattgatgacaagaattgccgggacatttgggtacctcgcgcctgaatatgctactacaggaaaagttactacaaaagttgatgtgtatgcatatggtgtgatactaatggagatgattacgggaaggaaagtacttgatgattcgttacctgatgatgaaacacatcttgtaacaatcttccgaagaaatattcttgataaagagaagttcaggaagtttgtagatcccacgctggagctcagtgcagaaggttggacgagtttgctggaggtagccgaccttgcccgccactgcacagcaagagaaccataccagaggccagacatgtgccactgtgtgaaccgactatccagcctggtggatcagtggaagcctacaaacattgatgaagatgactacgagggtgagacaagcgagatgggcctccaccagcaactagagaaatggagatgtgatgatttcactatttctgactcagatacatttggctcattcaacgtgccaaggaagtacaatggataa</cdnaseq>

Protein Sequence

<aaseq>MGRDARRLPLLPFLLLLLAAAAGVAESATDAEAIHDLARSVPAL GWDGDNVCGFEGVTCERGGAGKVTELNLADRGLSGTLPDSLSSLTSLTALQLQGNALT GAVPSLARMGSLARLALDGNAFTSLPPDFLHGLTSLQYLTMENLPLPPWPVPDAIANC SSLDTFSASNASISGPFPAVLATLVSLRNLRLSYNNLTGGLPPELSSLIAMESLQLNN QRSDDKLSGPIDVIASMKSLKLLWIQSNKFTGPIPDLNGTQLEAFNVRDNMLTGVVPP SLTGLMSLKNVSLSNNNFQGPKPAFAAIPGQDEDSGNGFCLNTPGPCSPLTTTLLQVA EGFGYPYELAKTWKGNDPCSPAWVGIVCTSSDVSMINLSRKNLSGRISPALANLTRLA RLDLSNNNLTGVIPDVLTTLPSLTVLNVANNRLTGEVPKFKPSVNVLAQGNLFGQSSG SSGGGGGSDGDSSSSDSAGGGKSKPNTGMIIGIIVAVIILFACIALLVHHRKKKNVEK FRPVSTKTSPAESEMMKIQVVGANGISNGSSAFPTELYSHVSAANSSNISELFESHGM QLSVEVLLKATNNFSEDCILGRGGFGVVFKGNLNGKLVAVKRCDSGTMGTKGQEEFLA EIDVLRKVRHRHLVALLGYCTHGNERLLVYEYMSGGTLREHLCDLQQSGFIPLTWTQR MTIALDVARGIEYLHGLAQETFIHRDLKPSNILLDQDLRAKVSDFGLVKLAKDTDKSL MTRIAGTFGYLAPEYATTGKVTTKVDVYAYGVILMEMITGRKVLDDSLPDDETHLVTI FRRNILDKEKFRKFVDPTLELSAEGWTSLLEVADLARHCTAREPYQRPDMCHCVNRLS SLVDQWKPTNIDEDDYEGETSEMGLHQQLEKWRCDDFTISDSDTFGSFNVPRKYNG</aaseq>

Gene Sequence

<dnaseqindica>1..2269#6398..6867#atggggagggacgcccgccgcctccccctcctccccttcctcctcctcctcctcgccgccgccgccggcgtcgccgagtcggcgaccgacgcggaagccatccacgacctggccaggtcggtcccggccctagggtgggatggcgacaacgtgtgcggcttcgagggcgtcacctgcgagcggggcggggcggggaaggtgacggagctcaacctcgccgacagggggctctccggcacgctcccggactcgctctcctccctcacctcgctcaccgcgctgcagctccaggggaacgcgctcaccggcgccgtcccttccctcgccaggatgggctccctcgcccgcctcgccctcgacggcaacgccttcacctccctcccccccgacttcctccacggcctcacctcactgcagtatctcaccatggagaacctccccctcccgccatggcccgtccccgacgccatcgccaactgctcctccctcgacaccttctccgcctccaacgcctccatctcggggcccttccccgccgtgctcgccaccctcgtttcgctcaggaacctccgcctctcctacaacaacctcaccggcgggctgccgcccgagttgtcctcgctcattgccatggagagcctgcagctcaacaaccagaggtcggatgacaagctatcgggcccaatcgatgtcatcgcctcgatgaagagcctcaagctgctgtggattcagtccaacaagttcaccggcccgatcccggatttgaacggcacgcagctggaagcgttcaatgtcagggacaatatgctcactggtgtggtgccgccctcgctgacagggttaatgagcttgaagaatgtttcactgtccaacaataattttcaggggccgaagccagcgtttgctgcgatccccgggcaagatgaggatagcgggaatgggttttgtcttaatacacctggtccatgttctccactgacaaccactcttcttcaggtggctgaagggtttggttacccgtatgagctcgccaagacgtggaaagggaatgatccatgcagtccagcctgggtcggaatcgtttgcacttcgtcggatgtgtccatgatcaacttgtctcgtaagaacttatcaggtaggatatcgcctgctttggcaaacctgactaggctcgcgaggctggatctttcgaacaataacctcacaggggtgataccggatgttttgactacattgccgagccttacagttcttaatgtcgcaaataacagactcactggcgaagtgcccaagtttaagccatcagttaatgtgcttgctcaaggaaacctgttcgggcaatcaagtggtagcagtggagggggaggtggttctgatggtgactcttcatcgtcagattctgcaggtggaggaaagtcaaagccaaatactggaatgattattggaattattgtagctgtgattattctttttgcttgcattgcgcttttggtgcatcatcgaaagaagaagaatgtagaaaagttcaggcctgtgtcaaccaaaacctctcctgctgaatctgagatgatgaagattcaggtggttggagcaaatggcattagcaatggaagcagtgcattcccaactgagctttacagccatgtgagcgctgctaacagctcaaacatttctgagctgtttgagtcccatggaatgcagttgtcagtagaagtgctgctaaaagccacaaacaacttcagtgaggactgcatcttaggtagaggggggtttggtgtggttttcaagggcaacctcaatggaaagctggtagctgtgaagaggtgcgacagtggtaccatggggactaaagggcaggaagaattcctggctgaaattgatgttcttaggaaagtaagacaccggcacttggttgcactacttggttactgcacccatggcaatgagagactcttggtctatgagtacatgtctggtggaacattacgtgagcatctctgtgatcttcagcagagtgggtttatccctcttacatggacgcagagaatgacaatagctttggatgttgctagggggatagaatatttgcatggcttggcacaggaaactttcatccatagagatcttaagccctccaatatattgttagatcaagatttgagagctaaggtttcggactttgggttggtcaagcttgccaaagatacagataagtcattgatgacaagaattgccgggacatttgggtacctcgcgcctgaatatgctagtaagtgtacttctctctgctgttaatttttttattctaaattaccagtctgtagtttctttttgcacacttttctcctctgttacaatctgttttttttttggagtgattgcagtttgattacatttgtcttggaacaaattttcagctttgcatattcactagtatcataattcaaggacgagcacaattgtgttgcactctgacacttcctaggaggacccatagggcatttccaattagaaatgacttggccatttctataggatttcatatcacccaggaacaatgatagtaacagccattacaaagggttccttgaagaattactgattggtaggctttattcaaaatttattttgaaataggatgggttcagtcctataaatatgtgaggtgtgatttgtttaagtagtttcataagtcgaaggagctaatagcattaattgtttcatggaatctcttagtgtagtgaatttggtgttggcctaggtttctttttgtttctatccccaaaagagttctctctatagagaaacaacttgcttctctctcctctccatctctctgcctaataaaaataatgatgctgggcttatagaaactaggatacaaggttagtatagcatagggattatcgattaggaaatagaacatcgattagtaggaacatagaaatgttttatatgcatcaattattacatagatccttttgaaatgctgcacttggaattctgggcgcacctagaataatggaccagcatatggtttttttggtacatggtataatacgtggttaattgtaatgggagcattgcgcttgtgaactgcacaaagcaatgtcttggcagagtattagcattggcctcagtttgttcttttaacgtgagtagttttacctttggccttgtttgtgaaatcttgtttatgacttagaacatataagtatcttatgcaggactgaagtgtccagtgaagtattggatgtactacaatgctgtattatctagccatttacattctaggaaacaaaatatagatcttagacacctagagctttcctctcctttattctaagagcttctgtgggatgtgcagttattttatgatgtcacttttcagagtaggtgttgataagttaaccatattgcatctttttactcctgttagctggacagcactactggtttcttggatacatgagcaccattttttttataaggatgccatagtgctttgcagatcctagccttgttatgcttcttaaagtaatgcaaatttcataaccactccgtatgttgcttttttcatagtagaggtttgactaccttgttcatactatcaatccattagactaaagggtacatcaatgtaataggagagaaataaatatggaagggtaagtgggtaacccgattgtttagtctgaggggagagatcaatagtactattcataaatggttttcttcaattggggcatgtttatatcctttaattgaacagctaatatttgtgtatccttcgaacattgaacttcttactttgttgacacataatctcttgtgacaatgaacgttgcccaaaccaattatccaggtttctgctggagataattttaatctgttaagtcctcttaacggaatgggggaagagttcaaaaaaatgagggcgaaaccacaaagttgggaaagtaggggtaaaaatcacaattggagttgaaaacaggctcaattgtcactttactaggggttttattgcttttctttatccaaactctaaaacatgtctcaaatccacagccagtggttacactaatagctggtcgtatttgttagggaaacactaggtcactagttatccttgcggtgacacatttttgtattgttcattctactgttctatcaactcaagttttcacatgcatcatgtctattagcagttattccttgactgtgtacctccatgatgcagaggctggagatatcttctgttatctaaaaaagttatgttttcctagggacaggaaatgcattatcttgatattgtgaaatttggagcttctcagttcacatgttgttttttcctcctagatgcttgagcataattatgacatcaataaatcattccatagaaattattagttctggttgctgatatacttacaaagaatagctattatcaattgatatgctcagagaaaataagggtcctacttaactcatgacatgtgatcaatatagttgtagtttagtatatatgaagagccatgatacattcctgggaatacaacgaatattcccttatgtgccggtcgaggtaacttagcctggtaaaggtggtagggatggagacgagtagcagaaggatgaaaagggagtgaacagctagggaactagcacaaggtatgttgcaaggtaggaggggagagtttagttgtgagacgagcatatgcataggttgacatgggaagtccgaaacaatatattgaatgcaactagcagataacaaatatttatttgttttcaactaaaaaatcagcttcgagcacaccacatactgttgctgctggtgtgatgcttgtccttgggccttgttgagttattctatttctataggctacaagaagtttttgcattgatctataaaaaaatgctggatatgggaggaggggctctcatatcgaaatttattaagagcggtgaggctcgaacttgcgtcggctagcccacaccttgtggtgctagccggaaggcccccaggcctttcttgcattgatctatctgtttaaagtaaaaataggtgactgtttgaatttgagtaagttggagacaaatgaaaaaaaagtgactgaaacaaaatactctgatctcatggagttaatctatatgttggaagtaaatgcagatgactgtttgaatttgagtaagttggagacagatgaaaaaaaaagactgaaataaagcactaagatctcatgggattaataagttggttctggaaattttcctttttcccgagcaagtttcgtgacaattcagttggtttcccaattggcttagtttttcgtatttcaaccctaagttcattcgtccatccttaattattccgcatctaccgatctactccctccatcccaaaatgtaacaacttttgaacggatgggacacatcctagtaatacgaatctagataagggcctgcacagattcttagtactaggttgtctcatccattcaaaaattgctatactttgggacagaggtagtacataaataaaagaaaggaaaaaaatcaattctctgttccttaactcactcagttcagttttcatctctcaattgccaaactggtttaatctgtccctcaactaccaaaatgtgtaagctgtaaagtccatctcttcactctacttgatagtggttctgatcttcatagagaattggccatcaatgatccataatattctaatttactgtttgtcatatgaacctatcacttatacagtctgtatgaatgtggaccccgctatctacttaactgaaaaaccacagttaaacaggcaaagtgatttgttaaactactcactcacagccactgggatttgaaacttgtttatccatcctctaaaatgtaggtaatacaggtggtcatgttacatagttggggctacaatgaactaaatgttctgtttatttatttcttttaagttaagttactctgttatttctttttctgtttatacaaaaggatgagcttgttaatgaaaaagttcttctgaatttattctacgatttttttcgcaataaatatttgcgaaagatttactgaattctattgccattgtaagccatagtgcttagtgtgtattcattaaattcctttgtttgaatgcatctccacataaatatgtgagcacatacattatcactccatctttatttaataaagaatgggttattaatttggattttttatctatctttgagtaacattttagcggtgattataatgcatatacatgtgcctatggaaaaccaaacctttatgtgtgattgtgtgtattgtacacatttccatgtgtctcattctttgatggtgtaatgactaacatgccatcttatctttacagctacaggaaaagttactacaaaagttgatgtgtatgcatatggtgtgatactaatggagatgattacgggaaggaaagtacttgatgattcgttacctgatgatgaaacacatcttgtaacaatcttccgaagaaatattcttgataaagagaagttcaggaagtttgtagatcccacgctggagctcagtgcagaaggttggacgagtttgctggaggtagccgaccttgcccgccactgcacagcaagagaaccataccagaggccagacatgtgccactgtgtgaaccgactatccagcctggtggatcagtggaagcctacaaacattgatgaagatgactacgagggtgagacaagcgagatgggcctccaccagcaactagagaaatggagatgtgatgatttcactatttctgactcagatacatttggctcattcaacgtgccaaggaagtacaatggataa</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0448000, RefSeq:Os11g0448000