Os11g0533800

From RiceWiki
Revision as of 21:20, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os11g0533800

Description

Cyclin-like F-box domain containing protein

Version

NM_001074554.1 GI:115485756 GeneID:4350650

Length

4817 bp

Definition

Oryza sativa Japonica Group Os11g0533800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21276811..21281627

Sequence Coding Region

21277053..21277379,21279029..21279178,21279248..21280111,21280272..21280355

Expression

GEO Profiles:Os11g0533800

Genome Context

<gbrowseImage1> name=NC_008404:21276811..21281627 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21276811..21281627 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctaagcgaatgaatccatgtcatgggaaactggtccccaagaacaaaagagccatattacagtttgatgacattcctgaggatgtggtgttcttgataatccggttgctttcgctgactaatgctgcgcgtgtcagcatggtgtcgcaaaagtggctacaatcttggaggctctatcctaatttagagttcacctcgaaggcgttgggtttgaataaacgggtgcacaaacaagggaggagggctaaatttgtcaggtgtgttaacaccatcataaggcaccacgctggaacagggattaactcattcaccttgaagcgcaacctcaacaatcacaagtacgcacactatattgaccgttggatttactttgcagtccgatctggtgcaaatgaactgactattgacctaagtccacgatggtatgctcatcctcgtgatgtcaaatacagctttccatcctctaatgttgctgctccagaaccaacctctatagagcatcttaagctttgctttatgaatttgaggcctttaccaacttttagtggcctaagaagcttgaagactcttgatttggcccttgtatgtataaccacagaagatttagagagcttgttgagttatacccctgctctacaacagttgaagctaaggcaatgtccaatgctggaatacttgaagatcactgatgtactagctaagcttgtctacattgatatcgttccctgcttgtggctgaagattttggagatccatgctcaaaatcttgttgcgattaatacttacaatatctgtcacctaaaaatagtactgagtgaagcattagtgttgaagggggcacacattgagttagttctgtcatcagatgttattgagtatgcttttactgatcttgcaccactcatgccagacctcgagtcattgttcctgagtggctgtactgagatgattatatccaggagacctccaagcaatagattccattgcctgaagcaattggagttaaaattgcaggatatatcgacgaaatatgatcttctatttcttgctaagtttgttgatgctgctccagtcctagaagctctcgtttttcatctggaagatatagaggagccattttgttacatggaaaaggaagcagagttgagaagtctggagaaacattgtccacataaaaacctcaagttggtcaaaatgactggattttcagcaggccgttcaagccttgagcttgctctgtatttcgtggagaactcaccagcactagaactcctgattcttgatcatcggcttgacagatctgtttgccgaatcacttttggtggtgacttggatgcgaaatgctcgaaaggatatgaacacactatctccaaatatgttagcaatgcgattcctcgccgtgttagattatcatattcctaa</cdnaseq>

Protein Sequence

<aaseq>MAKRMNPCHGKLVPKNKRAILQFDDIPEDVVFLIIRLLSLTNAA RVSMVSQKWLQSWRLYPNLEFTSKALGLNKRVHKQGRRAKFVRCVNTIIRHHAGTGIN SFTLKRNLNNHKYAHYIDRWIYFAVRSGANELTIDLSPRWYAHPRDVKYSFPSSNVAA PEPTSIEHLKLCFMNLRPLPTFSGLRSLKTLDLALVCITTEDLESLLSYTPALQQLKL RQCPMLEYLKITDVLAKLVYIDIVPCLWLKILEIHAQNLVAINTYNICHLKIVLSEAL VLKGAHIELVLSSDVIEYAFTDLAPLMPDLESLFLSGCTEMIISRRPPSNRFHCLKQL ELKLQDISTKYDLLFLAKFVDAAPVLEALVFHLEDIEEPFCYMEKEAELRSLEKHCPH KNLKLVKMTGFSAGRSSLELALYFVENSPALELLILDHRLDRSVCRITFGGDLDAKCS KGYEHTISKYVSNAIPRRVRLSYS</aaseq>

Gene Sequence

<dnaseqindica>4249..4575#2450..2599#1517..2380#1273..1356#gttccggcgccgccgtgtactcgccttccggccgcggccggcgtcgcatatcatttcgcctccctctgtatcatcactccgctccaccccccacgtagaacatctggcgccaactccttctcgtcatgcccatgcggtgaaatcagtttcgtggtaagagtccgtctcaaagttatcgcctttttttcacccctccgtcctctctggttccgattcggtattgatttggattgcttatttatacaagaagggaaaaaaaaccaaggccactcctagctttggcatcgatcggcccggttgtttggggatcttgcgctcagtagcgaagccaccagtatggcgaggtatggcggccgccatacctgcccaccggctgatcgcctcatcgcatcggctgttcgcctcctctcgtcgacagttgactcgtctcctgccgcgtgccgcccgatctccgactccaggtccaggacaccgccggacgccgttgccacgctggacgccgccacagtaatcactccgagacaccagttggttccatctctcgcacattagcaactatatcctgttgaatcagacaatcagttgttacgagtagtaatgttaaactagctcgtaatatctgtagttacccagattgcgccatggaagaggaagaaccatctaataatcgccgacgccgactgcgcccaatttcagaagctacccagattgggaaaaaaataaaaggtgagaatttaatctacccttgttggtactgttatttattcactttaacgtatctcttattttaaatttttatgtttgttagttgtcagtataaagagattttttagcagtagcactgctaatatatcaggaggagatggaaatgaaaatatagaagcaagagatgataatgaaattcagtccattattttattatatatgtatgttttcttatacaaactagagtactagactagtacttagtccgtagtaagttcgccataggtgaatttttatcctggcttcgccactgcttgcgctgcttctgtttgtatctagaggggatcgatcgaatacttgggagactcaaatccacaaatttcgtcagcattgcgtgctgctgctgcaatactgtggtgagtagatgtttaaagctcccatcttttctctctcttgttttctttctgttctgacatcagtagcacccatccaacgctaataatggcctattacaatttacagtttattaacttccagttgactgcagatcagtgtttttttggtctaatggctaagcgaatgaatccatgtcatgggaaactggtccccaagaacaaaagagccatattacagtttgatgacattcctgaggtaaatactagtagaatctagtgtcaatttccattctatgtacgttatataggtccacttatactgactgtgctgtttttctttttatgaatgtgagtatggagttctgtatatatatatatatatatatatattcaactgacttcttcttgatgtataggatgtggtgttcttgataatccggttgctttcgctgactaatgctgcgcgtgtcagcatggtgtcgcaaaagtggctacaatcttggaggctctatcctaatttagagttcacctcgaaggcgttgggtttgaataaacgggtgcacaaacaagggaggagggctaaatttgtcaggtgtgttaacaccatcataaggcaccacgctggaacagggattaactcattcaccttgaagcgcaacctcaacaatcacaagtacgcacactatattgaccgttggatttactttgcagtccgatctggtgcaaatgaactgactattgacctaagtccacgatggtatgctcatcctcgtgatgtcaaatacagctttccatcctctaatgttgctgctccagaaccaacctctatagagcatcttaagctttgctttatgaatttgaggcctttaccaacttttagtggcctaagaagcttgaagactcttgatttggcccttgtatgtataaccacagaagatttagagagcttgttgagttatacccctgctctacaacagttgaagctaaggcaatgtccaatgctggaatacttgaagatcactgatgtactagctaagcttgtctacattgatatcgttccctgcttgtggctgaagattttggagatccatgctcaaaatcttgttgcgattaatacttacaatatctgtcacctaaaaatagtactgagtgaagcattagtgttgaagggggcacacattgagttagttctgtcatcagatgttattgagtatgcttttactgatcttgcaccactcatgccagacctcgagtcattgttcctgagtggctgtactgaggttagtgaaaacaatatcacttatttgagatactttacgttctttatcttgactacatttcctatgcagatgattatatccaggagacctccaagcaatagattccattgcctgaagcaattggagttaaaattgcaggatatatcgacgaaatatgatcttctatttcttgctaagtttgttgatgctgctccagtcctagaagctctcgtttttcatgtaagttacttctctctagcacatttagcagcatgaactttagacagtactaaaattaaataactggttctccaagaaatgggataagcagcctcgaggcccttaacttgataactgttgaactgttctgttatattgcagttttaaacaaaatttttgaaaagtaaatgatgccatcagtggaatgcacattaagtgtaaattccagtgttgacactcttcgttgtatatgccatattataggcattttttagaacatcactctataacttacatttgtctagataatatctaatgttaagctatatgatgttggtatgttgatccacttatgccccccaaccccccccccccccaaaaaaaaaaaaaaaatcttatgttcacctttgtccttctgccataaaattttttatcatgtttcctttcttgtcacctctgccaaccccttcagttgaaatcgacataaatttgcccccagatgacagatcctaacacatcatattctctccaccttagctgccatggccacagcctctcaccgttatcaccatgctccttcacccattgctaaaccctaaaccccagacctgctgtgatgtgttgtataacgaatctggctgcctccaaccctataatcaccgccggttgttacagaactagtcaagagtgatcgaccggcagcatggtttccaggaacaagaaaagattccagagctgcttcaggaagcaagaaccaaattggaagtgaaccatgggagcctgaggctcagagcctgagacgctcagtagcttgcaaggccttttatcccttcatgttaactatgaaagagtcacaagaaattggacacgaatatggggcatgaatcatatggcttcctctccaacatcttttccttcccaaatgtttaagggaataagtggaccaacaatcgtttgggggaatagtgggatttattctccttaacccttgtggttgtgtgtacagaaacgtttgtggtgtcattatttcgagccctgtgtgatcttcatgtaatacttatagtagaagctgaaacagtggataggtcatgtctgattaattgagtaatactccttccgttccaaaatataagcatttcttaggttgtttattagcaaatagtaaggttaagtcaaaagattccttttagtcacctcagtggtcaatttttgaattttaaattgcttagattccctttctaagcatccaattgactttggaatcattggaaccatgggaatcagcacagcaatgcttatattgtggtacagaatttgaatcctggaaactcttgtattttggaatgggtggtatattgtggtacataatctgaatcctggaaattcttacattttgaaatgggaaggagtaagaaattaagaattcgaacaatgtacaattgttgcaatgtgataccaaaaccacagccgtgctacacaacttttcagttcatagcagtatgaaattgtggactgctgtagcttttttaggccatttgtgtattctgaatgtgctaatgttcaaatttcaagtccaacttggtttatgagcacatacttttaaactttggtgtctggtttgagactcataattttcctaagcaattcatctttgttgaaactttatgtagctggaagatatagaggagccattttgttacatggaaaaggaagcagagttgagaagtctggagaaacattgtccacataaaaacctcaagttggtcaaaatgactggattttcagcaggccgttcaagccttgagcttgctctgtatttcgtggagaactcaccagcactagaactcctgattcttgatcatcggcttgacagatctgtttgccgaatcacttttggtggtgacttggatgcgaaatgctcgaaaggatatgaacacactatctccaaatatgttagcaatgcgattcctcgccgtgttagattatcatattcctaatgtagcacaaacaagttgcacgtggtgcgagttgcagtgctaggactgctacagtagaaattaaaattgcaacgacagctgtataaattgtaagatgttttggtctctcaatctatgatgtgatcaggtaattaaatgacacatgagtgcagtaaaagtgcaagtatatagtagatcaatggcaatgggcaatgagatgtactacctccatttttttaatagatgacgccgttgactttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0533800, RefSeq:Os11g0533800