Os05g0542800
| Gene Name |
Os05g0542800 |
|---|---|
| Description |
Virulence factor, pectin lyase fold family protein |
| Version |
NM_001062733.1 GI:115465196 GeneID:4339483 |
| Length |
2847 bp |
| Definition |
Oryza sativa Japonica Group Os05g0542800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:27001561..27004407 |
| Sequence Coding Region |
27001733..27001888,27001974..27002105,27002205..27002375,27002453..27002479,27002584..27002791 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:27001561..27004407 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:27001561..27004407 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgattcttcgtgtgtccgtgatgcggctggttgttgcggccatggctgttgcagctggtgttctcttcttctccggcgccggcgaggcgcgcgtgctcctcaccctcgacgacttcggcgccgtcggcgacggcattaccaacgacacgcaggccttcttggacgcctggaacgccgcctgcgcctcgacggagccggccgtcctcgccgtgccggccgggaagacgtaccagatctggccggtgcggctcgccgggccctgcaagaagaagctcaagctcatgatttccgggacgatcgcggcgccggcgagccccgacgagtgggcggggcgcgacccgacgaagtggctctacgtcttccgcgtcgacgacctgtccgtctccggcggcggcaccatcgacggcatgggcgccgagtggtgggcgcgctcctgcaagcgcaagaagaccaagccttgcagcacggtgtctgctcccaaggcgctgcagttcgaggagtgcaggcgggtgagcgtgcaggggatcacgatgcagaacgggccgcagttccacctgatgttcacccggtgcacggacgtcaaggcaagcttcctccgcgtcgtggcgccggagagcagcccgaacaccgacgggatccacctcaacgacaccacccatgcccagatcatggacaacctcatctccacaggagatgattgcgtgtcaatggttggcaattgctctgacgtccgagtgaaggacatatcatgtgggcctggacatggcatcagtatcggaagcttaggcaagaaccggaccactgacagaatagagaacgtgagggtggacacctgcttgctgacaaacacaaccaacggtgtacggatcaagagttggcagggagggatggggtatgctcacaacctgaggttcgagggcatcgtgatgaagaacgtctccaatccaatcatcatcgatcagtactactgtgaccaaccaacaccctgtgcaaaccagacgcaggcggtggaggtgcgcaagatcgagttcgcgggcatccggggcacgtcggcgacggagcaggcgatcaagctggcgtgcagcgacgccgtgccgtgccgggatctggagctgaggaacgtcaacctgaccatggtgggcgtcgtgccggcgtcctgcctcgccaaggcgccccacaggatgctcggcgacgccacgccggcggccagagtcggttcttga</cdnaseq> |
| Protein Sequence |
<aaseq>MAILRVSVMRLVVAAMAVAAGVLFFSGAGEARVLLTLDDFGAVG DGITNDTQAFLDAWNAACASTEPAVLAVPAGKTYQIWPVRLAGPCKKKLKLMISGTIA APASPDEWAGRDPTKWLYVFRVDDLSVSGGGTIDGMGAEWWARSCKRKKTKPCSTVSA PKALQFEECRRVSVQGITMQNGPQFHLMFTRCTDVKASFLRVVAPESSPNTDGIHLND TTHAQIMDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGISIGSLGKNRTTDRIENVR VDTCLLTNTTNGVRIKSWQGGMGYAHNLRFEGIVMKNVSNPIIIDQYYCDQPTPCANQ TQAVEVRKIEFAGIRGTSATEQAIKLACSDAVPCRDLELRNVNLTMVGVVPASCLAKA PHRMLGDATPAARVGS</aaseq> |
| Gene Sequence |
<dnaseqindica>173..328#414..545#645..815#893..919#1024..1231#1634..1715#1858..1966#2114..2230#2356..2498#2553..2634#attcaaccgcaaaagcaacctagttagtacaaggcagcacatgcgctgctattagtagcagctgctaggtgtcctgctattttgttgccctgcttcctctaatcttcctcttcttcttctccttcaatcgtgtcgtgtcgtctccttgttcggttctttggtgcaggaagcaatggcgattcttcgtgtgtccgtgatgcggctggttgttgcggccatggctgttgcagctggtgttctcttcttctccggcgccggcgaggcgcgcgtgctcctcaccctcgacgacttcggcgccgtcggcgacggcattaccaacgacacgcaggtgaggtgttcgagctcggtgcaatttttttttttggtcggcgagaactctggcacgacggtgcactctgtcttttcgtgtctaggccttcttggacgcctggaacgccgcctgcgcctcgacggagccggccgtcctcgccgtgccggccgggaagacgtaccagatctggccggtgcggctcgccgggccctgcaagaagaagctcaagctcatggtacgtacgtgcttgccccgtgtcgcgccgcgcgccggcggcggcggcggcgttcgtctgttcgattcgatgacgcgagctgcattgtgtttgtgacagatttccgggacgatcgcggcgccggcgagccccgacgagtgggcggggcgcgacccgacgaagtggctctacgtcttccgcgtcgacgacctgtccgtctccggcggcggcaccatcgacggcatgggcgccgagtggtgggcgcgctcctgcaagcgcaagaagaccaaggtaacaacaacaaccaattcgccattgttaaccatcaaagcatcatctgaacgtttgctcttcttgcgttcttgcagccttgcagcacggtgtctgctcccaaggtgagcgagagcgaacgctcctccattccggccgccggagtacggtcgccggcggcgaccgtgactgattcttctctctgcgattgcattgcattgaattgcaggcgctgcagttcgaggagtgcaggcgggtgagcgtgcaggggatcacgatgcagaacgggccgcagttccacctgatgttcacccggtgcacggacgtcaaggcaagcttcctccgcgtcgtggcgccggagagcagcccgaacaccgacgggatccacctcaacgacaccacccatgcccagatcatggacaacctcatctccacaggtcagtgtgctgtgcatgccaatgccatgacaaaattcggaatgtacttgcttgcaagcttggactaatcttcagtttcagatgctgactttctgagacagtgtgtcagtgtctctcctacttctggtcaaactaattcagctatctgattccatttttcgcattttgttattcaagataagatcaaatccgccaagtcggcgcccaaaatcgaataattgacctggaaaaggaatacttgaaagttgttaaattaatgtagttgattgataagagatcaggtcatacattgctgctcttggtcagaatcttgggcttcctttgaagtttgaagcaggcagtgattaccgctgatatttggatgattggttaattaatctgctgtttaatcactttcttcaggagatgattgcgtgtcaatggttggcaattgctctgacgtccgagtgaaggacatatcatgtgggcctggacatggcatcaggttgcagtactttccaggattccatgccagtctttgcccatgatctctgatcagtataacaatagatttttctgtttctaaagaggattctgttactggaactgccaatgtcactgacacgtggcacttgtttgattgacagtatcggaagcttaggcaagaaccggaccactgacagaatagagaacgtgagggtggacacctgcttgctgacaaacacaaccaacggtgtacggatcaagagttggcaggttagttgcaggacatcacacttctgaattctcacaagaacaatctgatgaggggaaaaaacacttgcagttcttggttctgacaagaacaatctattcagaaaaaggagtaattatatgacaaaatgcaactttgtgcttgatcagggagggatggggtatgctcacaacctgaggttcgagggcatcgtgatgaagaacgtctccaatccaatcatcatcgatcagtactactgtgaccaaccaacaccctgtgcaaaccaggtaataatctgcattttcacctgcaaagcatcgtatcatctctgaaactctgaacttttgccattgttcagagcactagttcatcatctctgaaacttgggaatttttcgtctctgtggatgcagacgcaggcggtggaggtgcgcaagatcgagttcgcgggcatccggggcacgtcggcgacggagcaggcgatcaagctggcgtgcagcgacgccgtgccgtgccgggatctggagctgaggaacgtcaacctgaccatggtgggcggcggcgcggcgtcggcgttctgccacagggcgtccgggaaggcggccggcgccgtcgtgccggcgtcctgcctcgccaaggcgccccacaggatgctcggcgacgccacgccggcggccagagtcggttcttgatcgccgccggcaatgcccgatcctggcaacgatcaccggaaaaaagctgaagtataaataccgtacacgtaggtgtagaaactgttgccgtatttgggagagtgtatgagtacagagagttgtaagctgtatacgacgtttgtgtcaagaattttttagagggcattatgtgaagttaaaatggatacaaaaaaacataattttaccggagtt</dnaseqindica> |
| External Link(s) |
