Os11g0572100
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Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os11g0572100 |
|---|---|
| Description |
Similar to DNA ligase (EC 6.5.1.2) |
| Version |
NM_001074655.1 GI:115485958 GeneID:4350754 |
| Length |
9851 bp |
| Definition |
Oryza sativa Japonica Group Os11g0572100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 11:23285592..23295442 |
| Sequence Coding Region |
23285994..23285996,23286119..23286253,23286825..23287442,23287512..23287579,23287728..23287803 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008404:23285592..23295442 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008404:23285592..23295442 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcttcggacatcaggaaatggttcatgaaggcgcaggacaagaatggtggcgcagcgaagccggctgggacgacggcgttggcgaagaagcccgtgctcagcattccggagaagccgtcggcggcgccatctatggcggcttgtgatcaagattgttcagctagaaggaagactagcaagtactttgcatccaaaacagaaaaggaggaagacaccagtgcaggaaaaggtaccgggagaggtttgcctaaaagaaaacttcagaaagtcagtgatgagcttgaggatgacatgaagcctttgccagcaaaggaagtccataaagaagaagaagatgatgatgacgacgactttgtggcaccttcaaaaaggaaaactccggtgaagccaccaccatcaaagaagttgaagggtgcatctactgctgaagctcatggaaagactggtcttgatgatgataacgaggacaagatggatgaagacgctaagaccccttccaaggcatctggaagtggaaggggaaggggaagggggagagggaggggaggaagaggagcaggagcagcccatggaaagacaattggtcttgatgacgacggtgaggaggataagatggatgaagatgccaagaccccttccaaagcagctggaaggggaaggggaggagcctctgggggaagagggagaggagggggtgggagaggcttcatgaactttggtgaaaggaaggatcctcctcacaaaggggagaaggaagtcccggagggtgcccctgactgtttaactggtttgacatttgtcataagtggcactcttgacagtcttgaacgtgaggaggcaactgatctaatcaagcgttatggaggccgtgtgaccggctctattagcaaaaagacgaattacctattggctgatgaagacgttggtggagtgaaatcaaataaagcgaaagaactgggcgtcccattcctaactgaagatggtttatttgatatgattcggaaatcaaagcctgcaaaggctactgtggcaaaacatcaaagcgacaaaaattcagaaaagcagcaaaaatcaccaatgaagagttctccagttaaagttgaaagaagagatggtaatcaaattaccacaggcaaaaatatttcaccaaagagtaataaaggaagtgcctccattgacaaccaaaaggtcaacattgttgaccgtggttctttgcaatggactgaaaagtatcggcccaaagttccaaatgacatagttgggaaccaatcaatggttaaacagcttcatgattggttgagaagttgggaggaccaattccttcattctggccagaagggtaagggaaagaagcaggctgatagtggagctaaaaaggctgtgttgttgagtggacctccaggtattggtaagaccacaactgctaaagttgtcagtcagatgcttggattgcaggctattgaggttaatgcaagtgatagccgtggtaaggcagactctaagattgagaaaggtgttgggggcagtacatcaaattctatcaaagagcttattagtaatgcaactctgaattatagtaacaaccgattaaaacgacccaaggctgtactagtcatggatgaagttgatggtatgtctgctggagatcgtggtggtgttgctgatcttattgctagcattaagatgtccaagattcctataatttgcatttgcaatgaccgttatagccagaaattgaagagccttgtaaattactgcttgctactcaacttcagaaaaccaaccaagcaacagatgggtaagaggttgatggaaattgccaagaaggaaggtcttcaagctcaagagaatgcaatggaagaacttgcagaaagagtacacggggatattcgcatggctcttaaccatttgcaatatatgagcctctcccagtccgtggtcaaatatgatgatataagacagcgacttaatagtagcacaaaagatgaagatatttcccccttcacggctgttgacaagctgtttggttttaatggtgggagactacggatggatgagagaattgatttgagcatgagcgatcctgatttagtccctctgattatccaggaaaactatatcaattatcggcctatcactgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatctatagcggacgctgatattgttaatgtacaaataagaagatatcgacagtggcaattgtcccaagctgcttgtttgtcttcatctatagttcctgctgctttgatgcatgggaatagagagatccttgaagcaggtgagcgaaacttcaataggtttggtggatggttgggaaagtactcgaccacaaataaaaacataaggctactggaagatgcccatagtcatattcttgcctcccagcaagcaaatttggacagggagtcattgaggctggattacctcactcttctcttgagacaattgactgatccactgaagacaatgcccaaggatgaagctgtgcaaaaagtggtggagtttatggatacctactctttaagccaggaagactttgacacaattgttgaattatcaaaatttaagggtcatccaaatcctatggatggtattcaaccagctgttaaaagtgccttaacaaaagcatacaaacaaggaagtagttctcgtgttgttcgagcagcagatctagtaaatatcccaggcatgaaaaagccattaaagaaacgagtggcagcaatccttgagccagtgggagagagtttgcctgaagaaaatggagtagcgtcatctgaaggcgatgaagaggattcctctgatgctgaaaataatgatgaactggtgcctggtgacacaaaaccaaaactggacctgcagagtgataagaagaaagggatccaagtgcagctcgacctgaagagcaatggcaatggcttgaactcgaagaagatgccggctggtagatcaaaagcttctggctctgctgggaaggctgctggaggctcaggtgggaagaggaagaggtaa</cdnaseq> |
| Protein Sequence |
<aaseq>MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAP SMAACDQDCSARRKTSKYFASKTEKEEDTSAGKGTGRGLPKRKLQKVSDELEDDMKPL PAKEVHKEEEDDDDDDFVAPSKRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMD EDAKTPSKASGSGRGRGRGRGRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAG RGRGGASGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSL EREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMI RKSKPAKATVAKHQSDKNSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSAS IDNQKVNIVDRGSLQWTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKG KKQADSGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVG GSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKI PIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELA ERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDKLFGFNGGR LRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAESIADADI VNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNK NIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMD TYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGSSSRVVRAADLVNIP GMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDELVPGDTKPKLDLQ SDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRKR</aaseq> |
| Gene Sequence |
<dnaseqindica>403..405#528..662#1234..1851#1921..1988#2137..2212#2289..2350#2430..2581#2867..3030#3107..3295#3395..3516#3598..3805#4216..4269#4435..4604#5243..5333#5988..6169#6254..6293#6383..6507#7350..7422#7800..7892#8460..8706#9283..9342#9439..9572#gatccatccatccagccctcccggccccgcccatctcgccaaaatcgcgcgccgcttcccctccttttcccccaaacccgcgaccccctctcctcttccccctcgcgcgacgactcttccgaagcacacccccgccgccgcccgcctcctcctcctcctcctcctcccctccatcccccccaacatccggtggtgactccgacgaggaagcgccccaagaagcgaggtgaggtcggagggagggagggaggaagcagggatcggctcgctcgctcgctcgcttccgcccccaaccttaaaccctagggcccccgcacttcacctgctcatcggctcgaatcttgccgcgctcgggtgtggggaccgggaagatccgggtcttctcttttcgggggattggagatggtgagtttcttgggttgggtgttcttcaatctcgcccgcattgtttcctcgttcgacgcggggagggtttcttggctgattctttctcctcccttttttgtgttctttgtggggggcacaagtcttcggacatcaggaaatggttcatgaaggcgcaggacaagaatggtggcgcagcgaagccggctgggacgacggcgttggcgaagaagcccgtgctcagcattccggagaagccgtcggcggcgccatctatggtacaatgccaatccttttgcttgtgcccttttgagttcttcctgctgtacatgttcccttttgttgaggaatttctatgtaatctgttgtatggtgaattggcttagcagatcaattattgctaacaatagacaattttatgtaacctgggagtttcttgtggccaatagtctcaccatatgatgatgatatcatgtgcctgttcatactcctcctgctgattaaatctgggcattattttgtgcaaatgtttgatgatatccctggcatttacaaactacaaagaatgtacaatggtggatttagtttttggcgtagaatatgtaggcgataaaagtgatgaattatcttcagtatgtcatgttccattgcgcatcatgaatctaatacaataacgtgtaacagggtactctgctctgatcctaggtttattgtactgctgcattagcctctgttagtttggctacaaacttactgcagtctgcaaattatacactgcttccattaccttaattgtttgatacatcatggtttcctgctgttgagtaatttaattactggatcatccaggcggcttgtgatcaagattgttcagctagaaggaagactagcaagtactttgcatccaaaacagaaaaggaggaagacaccagtgcaggaaaaggtaccgggagaggtttgcctaaaagaaaacttcagaaagtcagtgatgagcttgaggatgacatgaagcctttgccagcaaaggaagtccataaagaagaagaagatgatgatgacgacgactttgtggcaccttcaaaaaggaaaactccggtgaagccaccaccatcaaagaagttgaagggtgcatctactgctgaagctcatggaaagactggtcttgatgatgataacgaggacaagatggatgaagacgctaagaccccttccaaggcatctggaagtggaaggggaaggggaagggggagagggaggggaggaagaggagcaggagcagcccatggaaagacaattggtcttgatgacgacggtgaggaggataagatggatgaagatgccaagaccccttccaaagcagctggaaggggaaggggaggagcctctgggggaagagggagaggagggggtgggagaggcttcatgaactttggtgaaaggaaggatcctcctcacaaaggggagaaggtagcttattccttcttgttataatttgccagaaaactcaatcctaaacttgttattcgtgttctgtaggaagtcccggagggtgcccctgactgtttaactggtttgacatttgtcataagtggcactcttgacaggtgctttctattgtcttcatttcttcatattttaatttgttttatgttcatgtaaatggtggatggtcggtgcaccattaatatcctcaaatttcctgattgaaacaatgccgcgaataagctatcataagtttatatacacttgcagtcttgaacgtgaggaggcaactgatctaatcaagcgttatggaggccgtgtgaccggctctattagcaaaaagacggtatgaaataatagtatgatacttgcattggtaatgttttttagcctatagtttgcttacatcgcttatttgacagaattacctattggctgatgaagacgttggtggagtgaaatcaaataaagcgaaagaactggggtatcatttgctcttttcactcaagaaaactatattttcttaattgtcatttctaacacatgactgtacttgtttgcagcgtcccattcctaactgaagatggtttatttgatatgattcggaaatcaaagcctgcaaaggctactgtggcaaaacatcaaagcgacaaaaattcagaaaagcagcaaaaatcaccaatgaagagttctccagttaaagttgaaagaagaggtaactgaaagcgtaaaaatgcttcttagttgtatagcgcatgcacaatcctgcttagcataacctaactattagatacttgtattctcaaagttgcatgaatttgagacatgattctagtgttcattgtgtcttttacccattgtagatgctagctttatccagcgattgttgtatccattgctgacatcatctgatgactaagttttatttgatttatttgtttgatattaacatttcgcaggttgtttatgcttacatatatcttgattttccaattttcagatggtaatcaaattaccacaggcaaaaatatttcaccaaagagtaataaaggaagtgcctccattgacaaccaaaaggtcaacattgttgaccgtggttctttgcaatggactgaaaagtatcggcccaaagttccaaatgacatagttgggaaccaatcaatggttagtgcttctgctttcggttaagctggtcacatacatctatgcacaattacttagtatgaacttatacatgcaggttaaacagcttcatgattggttgagaagttgggaggaccaattccttcattctggccagaagggtaagggaaagaagcaggctgatagtggagctaaaaaggctgtgttgttgagtggacctccaggtattggtaagaccacaactgctaaagttgtcagtcagatgcttggattgcaggctattgaggtaattctgctgttttgcatactttgcaaccttccaggcaactctttgtttcttactcaactattgaggcataaatgcaatgactaatgttcataacaggttaatgcaagtgatagccgtggtaaggcagactctaagattgagaaaggtgttgggggcagtacatcaaattctatcaaagagcttattagtaatgcaactctgaattatagtaacaaccggtcagtattacatgaagtttcatcaacctttttggacctttggttttatcttgtatataaatttggcaagaattttgacagattaaaacgacccaaggctgtactagtcatggatgaagttgatggtatgtctgctggagatcgtggtggtgttgctgatcttattgctagcattaagatgtccaagattcctataatttgcatttgcaatgaccgttatagccagaaattgaagagccttgtaaattactgcttgctactcaacttcagaaaaccaaccaagcaacaggttatctgttgacctctggacatattctcaatttcttgcaatttttaggcagttacgatacagttgcatgcagcaacttatttaggggtaatataagtcctatttgtttgtcaatctgaagttaaacaatggctatccccaagatcactcaaatactcgtacgtacggcagatttcacagccaacatagcttttcacgcacaaatgtattcctgattgcatagaaaccttctttataggcaggaattcttgctgttctaagtagcacatttatttcttattttaatttttccatctccttacatcgtatatattgtagactgttacatggaagggtaagcattattactcttggtgctcgtgacccaaaagttgtaatatagggttggttttaacttctgtgtttaacagatgggtaagaggttgatggaaattgccaagaaggaaggtcttcaagctcaagaggtgtgtttagagttctctgcttctaaacttccatcaaaagttttgggaaaaagaaaagaaaacacaacaaaaataaaagcaaaaccatttatagttctttttctcttcttttcttgtcattaccttttctccatgttactaatatatggtttcctcatctgctagaatgcaatggaagaacttgcagaaagagtacacggggatattcgcatggctcttaaccatttgcaatatatgagcctctcccagtccgtggtcaaatatgatgatataagacagcgacttaatagtagcacaaaagatgaagatatttcccccttcacggctgttgacaagtatgtgcattgattatactttttataaattctattcaattgtcctctatttcctcatcagtatttctagatatttttatgttcttattgactgacatgcaataatttcttagtgtataaatgtgaattatgtgaattttcgtattccaatcttgtattgattatattaatattttctgtcaaattgtacatccaagtttcattgtatttctactttgttatccattgataaggcgcacggcaaatattcaattgctagtttcattcattgataaacaaaagagaaagcttgtagatatacttggtaacttctccatatatttgtttattttaatggattttttttgacatggctttcagaggggctaaaaaagtaatttcttactctatactcatattttatttacctggaagttgtagctattttggctcttttgaactgttaatgttcatgctgtctaccgatttttatctgaatgatgtgttttgctcaagtgcatacgctctgctattgaaccagctgtttctggatctataatttgtggatttttggatgactttataatttgcaatgcaagagttgggttgtatttttcccgctactttaaattcataatagatattgattcaactttcaggctgtttggttttaatggtgggagactacggatggatgagagaattgatttgagcatgagcgatcctgatttagtccctctgattatccaggtaggggacactgatggtgcaaatctgtttttgtttatttttctgtagaattcttgtgggtcctgtgtcctgagatattttctgctatgaattgtttcccgatactttttgtattaaaagtagctcatcaggcttgcaacttggtttttccttcatttttgaatgagcatcacagccttctcatatcattgacatgtatcttgctagtgggttctgtagttgcaacagctgaagcgccattatttgttgcaatgctatttatgttctcttagtaccaagcaatcgttatatagtttgtgcgccaggtaacttgatcattacttttttgttggttgatacataggcgtgcacactccctactgaatgcgatatcccaacttttcctctaatggcaccccattctttttgaaagctgggatgctagccatctataatctatgcataaatactagctattatggtaagtaaattccagatgtgttgcattggtgtttggcccaattttttgctgtgtaaaaatatgcgctttattatgatctttttcaattgttatggtcatttgtagcatgttacttcatgtaactgttttcaatcacttctgtttggtccttaactgtgtgattaagcttgcatattaacacatgcctggtataggaaaactatatcaattatcggcctatcactgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatctatagcggacgctgatattgttaatgtacaaataagaagatatcgacagtggcaattgtcccaagctgcttgtttgtcttcatctatagttccgtaagtatatggtggttattatctgctgtaatcgatttaattcaaatgtctcactgatccactaatctatttcacatcttacagtgctgctttgatgcatgggaatagagagatccttgaagcagtaaagctcaaaccttatcatcaattactttttttgtttagtttatttttggtaattctggctcattgaattggataataaatctgtagggtgagcgaaacttcaataggtttggtggatggttgggaaagtactcgaccacaaataaaaacataaggctactggaagatgcccatagtcatattcttgcctcccagcaagcaaatttggacaggtggatatacttttacatattctacaaatttatcctttctggcattccatggattctgtttttactcttcacacgtatgatgcatcgtgtatcaggttgtaaagcaaggtgattgattgttttcttctcttgttttattctgtcacaagcggcatcttaaatatctgactaactatataaatttgccaaacaaacccaagcttttttttttagtttggtaaggatttgaatattgttacatctttgggttgatatgatcttaatcttccattgtgcttataaatctgaatggatttaggccagttcatggtttcaaatagattttcatgttattatctgaataaaaatgttttgtgtattagtcctaaatcgtaattccaaaccctaaggataatcagctcatcagtgaatcggctaattagtttagcacttggaagttagaacttaatcaaataacatggaattccagcatgatataccttgatacctccatctatgctcaagaagacaggcactaaatttccattgaatttctttcaatggctggcaacatattaattgatggacatgtcatgcttgtttcctgatgttactatgtttgaaaatcatggttttcttaacagtgagcaaattaaacaagccttacttttcttaacttgcctgaatcagtcaataagccaaggaaaatcaccattggtttttgaactttgttttagcaacattgaataaaaacccatgccttttcaagatgttgtggtccacatgagtacaatctgatctttaagatgattttcgatggtttatcatgagataatccaatcttatattgttgagaactgcagggagtcattgaggctggattacctcactcttctcttgagacaattgactgatccactgaagacaatgcccaaggtatatgtagatgtgatctattaattaactccttgttttgttctatggcattatacttgaatgtttcatgatgaggataatgacctggacactggcattttagaaatttatcttgatacctctaaatgcattagtgtactagccatcttctggagtattctgaagtaaggagtctctttaatttcatttgctgaaaaaaaaaatctgcaggagagcgtccataccttgacttgtgtacacggctcatcaattctgagttttaacatactgttatcttgcctttatgtaatagtattaccagtcttcttacaataattccctgttaagaatctttacctgagctatctgctggttatcttatatttgtaaaatcacaggatgaagctgtgcaaaaagtggtggagtttatggatacctactctttaagccaggaagactttgacacaattgttgaattatcaaaatttaaggttggtagttattctaatagaagccctatgtttgtgccatctattttatgttcattattaatctctttgaatggttttatacttattacaatatgtaatgtgctactgctaggtttgcccccttgtgtttgaaaatacttactctagatggtaggttctaggttgcatgcaaagttgcaaactgtatatttcactacactaatgatggcatttcaattgatttcgggaatgcaaaagctcatttgctataagttcttattgtgcaatgcaattttttgagaaccaaattgaaatttataaacatgtgatcgtgtagatatgaaatcagagaacaaacattttccaaagtactgaaagggagtgtttgcctgtgaatctttagtgccacaatggttgcatctcttgactgtttgtctatactcaactccctgcttgatatattttttctagaagcattaatgcatgaatcttttagctgagtaaacttgctgacttggttgtcatgattagtaatgccttgtcattatacttccaatggtgtttctgaatacatattttgttctgtagggtcatccaaatcctatggatggtattcaaccagctgttaaaagtgccttaacaaaagcatacaaacaaggaagtagttctcgtgttgttcgagcagcagatctagtaaatatcccaggcatgaaaaagccattaaagaaacgagtggcagcaatccttgagccagtgggagagagtttgcctgaagaaaatggagtagcgtcatctgaaggcgatgaagaggattcctctgatgctgaaaataatggtaagtttttctttttcagcaaatgaaatgactatcacataggaggctatagctgtgttttgcaaaaattgaaataatggagtactttctccgttttacaatgtaagtcattccagcattttccacattcatatcgatgttaatgaatctagacatatgtatctatctagattcattaacatcaacatgaatatgggaaatgctagaatgacttacattgtgaaacggagggaatacatcggatgaggacatgcgtgaaacgaagggaaacagaagttgataagtgagcatttgtaaatctggactagttttgtttcatactgggaaaactgtggtacagtaacatgtcatactgccatatcatcttcatatacatttgtgcttttattctcaatctttagttatgcaacttaggcctatgtttgtcagctgttgtgctagtagtgtttggcataacaatgccatgtcatgtcaattatattagcttcagcccaattttcattaggacatttaaatcgataatttgtattcagtgtatgttttgtttgaccaacctgctttgtttatttctttcagatgaactggtgcctggtgacacaaaaccaaaactggacctgcagagtgataagaagaaaggttctcgtactttgactagttggattctccaccagtcttaccttctgctatttacggtcgggcctgactctttggtaattttggttttatatccagggatccaagtgcagctcgacctgaagagcaatggcaatggcttgaactcgaagaagatgccggctggtagatcaaaagcttctggctctgctgggaaggctgctggaggctcaggtgggaagaggaagaggtaaacgtccgccggccgccgtcatttagtcggtggtgaatctacatgaacatcctctgatattctggggcagaatgcggttcaaattttcttgcttgtacataagtcccaatcatctttgtaggcagtagtaggcaattggtatctgctccagatattttgtttcctcccacttgtatgagcttcatttcgctctactggcatttggccagttttcagctttgcaagacaacgtccattattgttgacttccgttcaatgaaattgtgtcatgtttgttgtc</dnaseqindica> 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