Os05g0545200

From RiceWiki
Revision as of 10:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0545200| Description = Pleckstrin homology-type domain containing protein| Version = NM_001062745.2 GI:297604847 GeneID:4339495| Length = 5...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0545200

Description

Pleckstrin homology-type domain containing protein

Version

NM_001062745.2 GI:297604847 GeneID:4339495

Length

5635 bp

Definition

Oryza sativa Japonica Group Os05g0545200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27118823..27124457

Sequence Coding Region

27122996..27123127,27123384..27123473,27123557..27123643,27123767..27123784

Expression

GEO Profiles:Os05g0545200

Genome Context

<gbrowseImage1> name=NC_008398:27118823..27124457 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:27118823..27124457 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacaccagatgataatgcccttattactttaaagaaaggcagcaagcttatcaagtatagccggaagggaaaacccaagattcgtgagttcagactttctagtgacgaaaatacattagtttggtactcccacaacaaggaaaagtgcctcagactgtcttctgtgtctaaagttatacctggacagagaactgctgtttttaggaggtttttacgccctgagaaggattacctatcattttcccttatatacaagaacggccaacgttcccttgatctggtaaaatataaattctttgtactcgttttcattaactggggttaa</cdnaseq>

Protein Sequence

<aaseq>MTPDDNALITLKKGSKLIKYSRKGKPKIREFRLSSDENTLVWYS HNKEKCLRLSSVSKVIPGQRTAVFRRFLRPEKDYLSFSLIYKNGQRSLDLVKYKFFVL VFINWG</aaseq>

Gene Sequence

<dnaseqindica>1331..1462#985..1074#815..901#674..691#ctcttttttcgtcgtcctcctctcaacgggaatccggtgatgcgcaatcatcgatcggcgacctcaccgccggcgaccggacacgggaacccacgcggccttcctccgccggagtatcctcctctcctaggcgccgccggctcggatcgttctcttctttgttggtaaggaacagtacgctgcccctcatgtccatcccatctgcagtagattcagcatttacatttcgttttgtgtatctgtggcgacgtgttcttggtgaaaaatatgtatcgttcaaatttcaagcaacccaacgaaatacatatcataagtttgaaatttttcacattaaaaaaacaaaaaaaatcccaaaacaggacgagcattttatccagcactaataatatgaagcaaaccggccgctacttgtcatttgatatcgagattgtgaaggttgtgtacatatacatcgcttgcagtgtttttcgttttgttgctgtctgaaatgctcttctagcaaacgggatgaaggatctctgtctccctgggcacaaaaaccacatcaactctctcatatatgtcattgaaaacaaaatccattattgtctctctgataactcagtgttagtttatctgcatagtttcaggtgatcaagagttgcaaatagaatgttgacctgttgctgtttagatgacaccagatgataatgtgagcttctacacaatgctttcctgtttcatttccctctattttgcctcaacacaaatttgtccgctaaagatttttttagtgttgatcctggctatttttcacattctctgaaatctgaaggcccttattactttaaagaaaggcagcaagcttatcaagtatagccggaagggaaaacccaagattcgtgagttcagactttctagtgtaagttcatatgtatgttcgtttgcaatcaatgtcagctctttgctacaggatgaaagtaacgatatttttttttatcgcaggacgaaaatacattagtttggtactcccacaacaaggaaaagtgcctcagactgtcttctgtgtctaaagttatacctggacagagaactgtaagttgaattgccaccggacagttaactgttggtggttaatttgctggtaaacatgaagcaagaaaaatatatgttgttggtgatactccaagagtaaactgtttcattttaaacatgcagcaagaaaaatatatcttgttggtgatactccgagagtaaattgtttcattttaatgaatttttacattttttttcgagccaaagaacttttacgttttaagttgtgatcttatggattttcaatttttaacaggctgtttttaggaggtttttacgccctgagaaggattacctatcattttcccttatatacaagaacggccaacgttcccttgatctggtaaaatataaattctttgtactcgttttcattaactggggttaaatgattttacccctaggtgctatagtttatggaacacaataattttcttacaggtttgcaaggatcaagctgaagtagaagtgtggttttcgacacttgagtcactgattacttcatgccgtctaaattttctgaatgatggtcaaactgatagagtatcattttctgaagtgagttattctcctttccccatttacattattttaatttatattaaagtcgagtacaaacaaaaattcaccttcattttctacaacaatttataatccaatccttgtacaaatgtggccatcccttttaaggatttgattggactgttggaggtttcagcttccttgagattccgatgagctaataaaaatataggatgcacaaaaaccatatttgagcatacaaaatcattattgttaaacaattatagagaattaatatacctagtaaatcacttctgtcattatgacaccgactaattctgtaatagttgtttgacttagctagaatatcatcaccttactgttcttgtttaacaaatgtttcttttttcaggacgtaacaatctatcaagatagcacttcctatgatacaacgctagatatcgcctcaagtattacacgtagttttaactcagctggttatagcacaccgaattcattgaattctattagagcagatgttggatcagaccgcgtaaatatgctaagagcaagtacaggagacaatagccgagttagtatttccagtgcccctagttcttccagtcaaagttctggactagatgacatcgaatccctcggcgatgtttatgtatggggtgaggtgtggactgaggtgctaccctctgaaggatcctccaactatttgtgcagcaaaacagattttttaattccaaaacctctagaatcagatgttgttttggatgttcagcaaatagcatgtggctctaggcacattggccttactactcggcaaggagaagtattcacttggggtgaagaacttggtggacggctaggccatggtactgatactgatatctgtcgtcccaaacttgtcgaatccttggcagtgtccaatgtggaatacattgcgtgtggggagtttcatacttgtgttgtaactgcatctggtgatctgtatgattggggtgatggatcatacaatgctggattacttgggcacggaactggagttagccattggcttccgaaaagagtttcagggcctctagaagggcttcaggtactctctgttgcatgtggctcatggcattcagcactgaccatgtcaagtggaaaacttttcacatttggtgatggcacatttggttctcttggtcatggagaccgtgaaagcgttgcatatccaaaggaggtagaagctttgagtggattcagagcaatgaaagttgcatgtggagtatggcattctgcagcaattgtggaaatcagtggtcaggcaagcacaaatgcaatgtcaagaaagctgtttacatggggagatggagataagaatcgcttgggccatggcgataaagaagcgaagctagttccaacatgtgttcaagcactcgttgaccataatttccatcaggtggcctgtggacatagcatgactgttgctcttgccacatctggccatgttttcacaatgggtagctctaacaatggccagcttgggaatccaaaagctgatggtaaacaaccatgtatggtgcaagataagttgggtaatgagttggttgaagagatctcatgtggctctaaccatgtagcagccttgacttcaagaagtgaagtatatacatggggcatgggagccaatggaaggttgggacatggtagtgttgaagacaaaaagaagccaactcttgttgacgcattgaaagatcgtcatgttaagagcatttcatgtggttcaaatttcactacatgcatttgcatacataagtgggtttcaggtgcagatcagtctgtttgctctggatgcaggcagccatttggtttcacaagaaagaggcacaattgctacaactgtggacttgtccattgtcatgcatgcagttctaggaaagtgctcaaggctgctttggcaccaactcctggcaagccacaccgtgtatgtgattcatgtttcatgaaactgaaagccgcggataccggcgttatcagttcatataacaaaaggaatgtcatcaccaggcgatccattgatatcaaagataagttagagagaccagaaataaggccttccagacttgcaacgacatcaccagcagagccagtcaagtatcaagaaacaaaaaatgttagaaatgagacaaaaccagccgatcctatgtccatgatgaaagcatcacaagttcctgccatgttgcagttcaaagatatggcttttgcaggaacatttggtacagttccaactaccgtaaaatctatgacaatgggaggtcaaatgcaaatgggcatgccaatgttttcaccatcgccaccgtcaaagaagccaagtccacctccagcgaccgcaagtcctctgatcggtaaagtggacaatgatggcttgaagaagactaacgagttgctgaatcaagacatttccaagttgcaatctcaggtatgaaagaacactctagattgttctatttcttcaatgtgattagctgaatttgttaaaaccattttttatgttgacaggttaataagttgaaacagaaatgtgaaactcaagatgagcaactacagaaagcagaaagaaaagctaaacaggctgcctctatggcttcagaagaatctgctaggcgcaatactgtcttggattttgttaagcatcttgacagtgaggtacattaaactactattactgtgcaactcttcatctattattatactttccatgatagtgtacgtatttgttctactgtatagtttggagtatagtagctctattgtgttccatttatattactgacacgtttctatagctcaatcaaaatacaataaagggcgcacgatataaaatcatgtttatcatgttatcctagtgtcttgtatgatcataattgcttcaaagttcatgtttatttatcattattagaggatatactcatgatatcacaaccctccattcttcagctcaaggttattgcagacagggtgcccggtgatgttgctgacaacttaaaaactttgcaaagccagtcggagagatttcttgcaggacaaagtagtaatctagtggagattactggccttactggacatgatatcggacaccataggtcaagtagcacgggtagcctgccagtgtctcaagatggcagttctggaaatgctagtggctcttccattgccatggctagtgactctccatgtcaccgtatcatggaaaacaacttgaaggctccaggtgacttcgcaccaaagtatggtactcatggagaagtgcagttgattgagcagtttgagccaggagtgtatgtgacgcttatccagctgagggatggcaccaaagtattcaagcgtgtcaggttcaggtattccatcctcaaatccttcttggatgtaaaatatatcttccaacttgattaatctatcaatagtccatctttcaaaaaacaacacttgcaccatccacacttttgaaggaaaaacttcgaagcttttgtttacaattgaagtgtgttcagttcaagatgtgcactgaaagcatagttctttctatgtttttgtttgaagcaacaactccaggtgatcatttatttatggttcattcttctacaatcttttttttttgtttagcaagaggaggtttgctgagcagcaggctgaggaatggtggagggaaaaccaagagagagtgttcaagaaatacaaccatccaactaactaggttccaaagaaatagcagtgaaagcaacaacccatgtgaaattacttgtcatttttagaatgagctactgggtaagaatcttgtttttctcttatgcttagtaaatttcttttcttttttaagataatggaagtataacttctggcctctagaccaattagcaatgcacacaaccatatttgtggatgaactttggtggatagagtcagatactaatgcctccacaaccacacggatggtgcctactgaattgctgatatacatcttgaagagtattgatgattgtcc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0545200, RefSeq:Os05g0545200