Os11g0599500

From RiceWiki
Revision as of 21:22, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os11g0599500

Description

Similar to RNA helicase (Fragment)

Version

NM_001074753.1 GI:115486154 GeneID:4350856

Length

4495 bp

Definition

Oryza sativa Japonica Group Os11g0599500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:24791971..24796465

Sequence Coding Region

24791971..24792720,24792836..24792919,24793637..24793879,24795110..24795277,24795470..24795583
,24795953..24796465

Expression

GEO Profiles:Os11g0599500

Genome Context

<gbrowseImage1> name=NC_008404:24791971..24796465 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:24791971..24796465 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaccccctcccgcacctcctgggccgacgtcgccgacgccgaccccgccccggcccccgcccccgccgccaacggccccgcccgccccgaccggagctcctacgtgcccccccacctccgcaaccgcggggcttcgtcgggtgggggcgcggcggcgcctccgccctcatcatcctcctcctccgcgccgccccctcgcgccgcccctggcctcctcgccccccgccccgccgccgccggcatggggaggatgggcggcggcggtggcggcggaggattcggtgggccaaggaggtgggaccgggagccgaacccgttcgggaacgacggcgacgccgcggcgggggcgggggacgagccggaggtgttcgacgcgcaccagaacaccgggatcaacttcgacgcgtacgaggacatccccgtggagacgagcgggagggaggtgccgccgccggtgggcacgttcgccgagatcgacctgggccaggcgctcaacgacaacatccgccggtgcaagtacgtgcgccccacgcccgtgcagcggtacgccatcccgatctcgctcgcggggagggacctcatggcgtgcgcgcagaccgggtccgggaagacggccgccttctgcttccccatcatcagcggcatcatgcgcggcccgcccgcgcaaaggccccagcgcggcgggatgaggaccgcctgccccctcgcgctcatcctctcccccaccagggagctctccatgcagattcatgaggaggcgagaaaattttcctatcagaccggtgtcagggtggttgttgcatatggaggagcacctattaatcagcagttgagagatcttgagaggggtgttgacattcttgtggctactcctggccgtttggttgatttattggagagggcaagagtatctttgcaatctatcagatatcttgcccttgatgaggcagatagaatgcttgatatgggttttgaaccgcaagttaggagaattgttgagcaaatggacatgcctccgccaggtgccaggcagacaatgttgttcagcgccacgttcccaaaagaaatccagagaatggcatctgacttcctggagaactacatattcctggctgttggaagagttgggtcaagtacagatttgattgtacagagagttgagtttgtgcaggaggcagacaaaagaagccacttgatggatctgcttcatgcacaaagagacagtgctactccaggaaagccaactcttacacttgtctttgtggaaaccaaaaggggtgctgattcgttggagcactggttgtgtatgaatggatttccagctacttctattcacggtgatagaaaccagcaggaaagagagtatgctttgagatccttcaaaagtggacatactcctattctagttgcaactgatgtggcagcccggggccttgacattcctcatgttgctcatgttgtgaactttgatcttcccaatgatatagatgattacgtccacaggattgggaggacagggagggcaggaaaaagtggtcttgcaactgctttcttcaatgagaataactcttccatggcaaggtctttggctgagctaatgcaagaatctaatcaagaggtacctgcgtggttgtctcgctatgctgctcgcccatcttatggtgggggtggtgggaggaacagaaggtccggtggtgggagccgcttcggtggccgtgacttccgcagggattcttcctctggaagaggtggcggtgactactatggtggaggcagcagcggtggagctggtggatatggtggttcctctgcatatgggggtggcggctatggtggcggcgcgggtgctccaagtgcctgggattaa</cdnaseq>

Protein Sequence

<aaseq>MATPSRTSWADVADADPAPAPAPAANGPARPDRSSYVPPHLRNR GASSGGGAAAPPPSSSSSSAPPPRAAPGLLAPRPAAAGMGRMGGGGGGGGFGGPRRWD REPNPFGNDGDAAAGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEI DLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM RGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIN QQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV EQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQ EADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDR NQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG RAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAARPSYGGGGGRNRRSG GGSRFGGRDFRRDSSSGRGGGDYYGGGSSGGAGGYGGSSAYGGGGYGGGAGAPSAWD</aaseq>

Gene Sequence

<dnaseqindica>1..750#866..949#1667..1909#3140..3307#3500..3613#3983..4495#atggcgaccccctcccgcacctcctgggccgacgtcgccgacgccgaccccgccccggcccccgcccccgccgccaacggccccgcccgccccgaccggagctcctacgtgcccccccacctccgcaaccgcggggcttcgtcgggtgggggcgcggcggcgcctccgccctcatcatcctcctcctccgcgccgccccctcgcgccgcccctggcctcctcgccccccgccccgccgccgccggcatggggaggatgggcggcggcggtggcggcggaggattcggtgggccaaggaggtgggaccgggagccgaacccgttcgggaacgacggcgacgccgcggcgggggcgggggacgagccggaggtgttcgacgcgcaccagaacaccgggatcaacttcgacgcgtacgaggacatccccgtggagacgagcgggagggaggtgccgccgccggtgggcacgttcgccgagatcgacctgggccaggcgctcaacgacaacatccgccggtgcaagtacgtgcgccccacgcccgtgcagcggtacgccatcccgatctcgctcgcggggagggacctcatggcgtgcgcgcagaccgggtccgggaagacggccgccttctgcttccccatcatcagcggcatcatgcgcggcccgcccgcgcaaaggccccagcgcggcgggatgaggaccgcctgccccctcgcgctcatcctctcccccaccagggagctctccatgcaggtgatggatgcgaagaaagtctttgttgctttgtcggtgcaggatatcatctctgatttgattttctttgacatgcatttgatgggcgctttgttatatttgtatgctcttgcagattcatgaggaggcgagaaaattttcctatcagaccggtgtcagggtggttgttgcatatggaggagcacctattaatcagcaggtctggttccggatctttccacgaaatttcaaatccaattatgtgtcaattcaagtttagaaaactgcttgctcggtattttaggatggttagaacttgataaacttgcatgataggacaagcaattacttcttccacataggccacgcaggacctttgatttgtggcgtacggtcatggcccatgtgaagggtaaacaatgagatgtataatttaggtctttctatttgctgatattgccattttgcgttcaacatatttgtattagtgaggatgattatttgtgaatcttcatttttttgctagctggtgcctttacacaggttaaaaatgtttaggccctctacagtgtccatcgtaggttttccaatataattcatagttatggttgatagcaacatcccccttgttatggcataattttatccttgtcccatgtttaatctaaaacagttgaatcattgccggaagaattttctgaccaatgtgaagcattcgttgctaggttagccaatccattagttcctagccttgtggttcattcatcacaagttaatccaaacaagaacttaaaacaatatgaaatgacatttttaggacttctggtcaatgttttgtctgcatatgtggatagggtgtgcttggcaatcatcaaactaccttatcttctcaaattgtatgatatcgtaaaccgaatattgaatttgttttttgcagttgagagatcttgagaggggtgttgacattcttgtggctactcctggccgtttggttgatttattggagagggcaagagtatctttgcaatctatcagatatcttgcccttgatgaggcagatagaatgcttgatatgggttttgaaccgcaagttaggagaattgttgagcaaatggacatgcctccgccaggtgccaggcagacaatgttgttcagcgccacgttcccaaaagaaatccaggtaagctgttcatgttagtttactgtcttcatactcaatatgcatttcaactgcatcacggcattttatcaattgactggatcttgctaatagacttcatgtcctcactgtagttgcatattttactgattgatttattgttttgtctcttcccttacacattcccacgtttggttggtatttctgttcctttgccatattttccttaaatagggtaacattcgcttttgtgctggctgagcttcaatatgcgagtaatatagtgggaacctttagtatgcgttgcacttgttttgttggttacacatgaaataattaagaaatacacatattctttacacttgaacttattggctatatcctagtcacgaggacaaccaaaaagctctgctagaaaaatacatggtggctaaaaacttggggcaagctaatttgggtctgtttggtttaactcccagacaacccacacccaaaaaagtggcaagaccaagggaatggcttgtattaatggtttgctgccaaaaaattggtgtttccaaattttggccataaaccaaacacccacactttgccaaatttttggtaagactcaaaatgacaacgatcaaaacaagtccttcgcttcacaaattttaggaagaacattgcctatgtgttaaggtaaagcaaaatttgccatgaactcaagtgaaggccaaaatatgatctgataacctttttgagaagcttttctttgccttgttattgacataactaccatcacttgctgtataatgtactccctcaggtacatagctaaaggttgctctattttgggacgtcgggagtatatatttgggaagttacagccttttttgttataacttttttctctattcctaaagaaaagtttctattagtacactcaaatcatttatttatgataaagataatattatgtgttcggatattatcttaatgataagcagtttctcgggggttaagtagccgctatcctaggtacatatttgaacttatatttggtgatacttatcatttggcatcattacatcaagtagtttcttagtgctgactaatgttgtctaacttttttttttgttgtaatatggttgcgtctatatctgattctatgcttgtcattttaccttggtgaaacgctatctaattctctttcgtgtttattttcatctgtatactgaatgaggttttgtgatttgctgatgaacacagagaatggcatctgacttcctggagaactacatattcctggctgttggaagagttgggtcaagtacagatttgattgtacagagagttgagtttgtgcaggaggcagacaaaagaagccacttgatggatctgcttcatgcacaaagagacagtgctactccaggaaaggtgatgcagaagtaatatctgtctgcagttctatattacatccatgatttaaccacttccccagaatgtcctggtgtttttcatgagtaactttcctaagattatctgtggaattgccatttggcacttaaagtgaatagtgcaattgcccaaagtactgttgtattcactgtttttttaaccctggtgcagccaactcttacacttgtctttgtggaaaccaaaaggggtgctgattcgttggagcactggttgtgtatgaatggatttccagctacttctattcacggtgatagaaaccagcaggttcgttcttgttcttttttcgctcatgctatttggatttctagcattgtttagctatacttattctctgaaatggttaaaccaatcattcatctgatgatgaaatgtatgctgtcattttgagtcatctctttcctggttagttctaaagaagatatgcatgtacatcaatatcatttctatacattgatattacatagcagagttgtctagttcttgttggttgactcatatatgcaaccacaccatttcagtagtatttgcttattaccattgagcagtgtggaacttgtgccaaacaaattatggtgatgcttttgtgcacgaagtgtttgctttgctgatgtattaatgtgatgttgcttgcaggaaagagagtatgctttgagatccttcaaaagtggacatactcctattctagttgcaactgatgtggcagcccggggccttgacattcctcatgttgctcatgttgtgaactttgatcttcccaatgatatagatgattacgtccacaggattgggaggacagggagggcaggaaaaagtggtcttgcaactgctttcttcaatgagaataactcttccatggcaaggtctttggctgagctaatgcaagaatctaatcaagaggtacctgcgtggttgtctcgctatgctgctcgcccatcttatggtgggggtggtgggaggaacagaaggtccggtggtgggagccgcttcggtggccgtgacttccgcagggattcttcctctggaagaggtggcggtgactactatggtggaggcagcagcggtggagctggtggatatggtggttcctctgcatatgggggtggcggctatggtggcggcgcgggtgctccaagtgcctgggattaa</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0599500, RefSeq:Os11g0599500