Os05g0558800

From RiceWiki
Revision as of 10:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0558800| Description = Protein of unknown function DUF1675 family protein| Version = NM_001062831.1 GI:115465392 GeneID:4339584| Length = 3...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0558800

Description

Protein of unknown function DUF1675 family protein

Version

NM_001062831.1 GI:115465392 GeneID:4339584

Length

3714 bp

Definition

Oryza sativa Japonica Group Os05g0558800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27876226..27879939

Sequence Coding Region

27877830..27878823,27879277..27879638

Expression

GEO Profiles:Os05g0558800

Genome Context

<gbrowseImage1> name=NC_008398:27876226..27879939 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:27876226..27879939 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgatgagaatggccttgagcttagcttgggtctctctttgggtgggacatcaggaaagtctaaggctagagatgctcctctagaacctaaagcagagcctcaagtggaagagagcagtagcaaaggtgtttcacaaactcctgaggctccttttgtgcattactatcaaacaaatgcagagaaccaagaacacagtagcaagcagagacacagccctgctgcaccaccgtttgggaacttttggggacagccagggagttcttctgttcctgtggcagatggatccaatgaacagaagccagtctctagtaaacggaaattactttctgaggagataagttttcagaagaaacctaatacagctgctgagcaacctgatgcatttagtaagagctctgacggtggtgtaaaaaacgctcctatttcaattagcacggatgatggttcaacaggtgaaaacgaggatgttgcagaatcagaagcagaaggctcaaactcttggttggttgcacagcgtgaagacagtgctaagggatctgttgtcaatagaggatctgacagaaaacgatccagtgatgatgctgcagttggttttcaaggaaagaggcagccaagtttctcaggaagtgaatccagctctggaaaattgccacaaggaaatcctttgtcattgcaagcatcaaatgttgttgctgtgccatatcaagtcccgtctcaggtttcagctcctcccagtattaccaatgcatcaaatttcactccagtatgtacagtgcagttgaggccacctacaaacaatggactagctgttacaatgggcagtacctctcaggtagcttttggttatccagctgtccagctaccaacacttgaaacaagctcttcatgggcttttggtgctccacctcaggctatgtcctcttttactgcaaaagacaaagttgaacgagcaggaatcagtcaagctgacgatggcaagaaaactcaagaggctggtgcttcctcttctgctcttgtggaggatgacaagaagtctgatagggcattacctctcatgggttctgctataaggccaggcattgcaccaaatgtcaaattcggaggatctggatcgtatcctgaccttccctgggtttctaccactggtactgggccaaatggcagaaccatatcaggtgtaacatataagtttggcagaaacgaggtgaagatagtctgtgcctgccatggcacccacatgacgccggaggaatttatgcggcacgcaagtgcagatgctccgggccaagaaaatagtgcaactttgccggcatttcctgtcgggaaccaagcagcctcagcccaaaactaa</cdnaseq>

Protein Sequence

<aaseq>MDDENGLELSLGLSLGGTSGKSKARDAPLEPKAEPQVEESSSKG VSQTPEAPFVHYYQTNAENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQKP VSSKRKLLSEEISFQKKPNTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAE SEAEGSNSWLVAQREDSAKGSVVNRGSDRKRSSDDAAVGFQGKRQPSFSGSESSSGKL PQGNPLSLQASNVVAVPYQVPSQVSAPPSITNASNFTPVCTVQLRPPTNNGLAVTMGS TSQVAFGYPAVQLPTLETSSSWAFGAPPQAMSSFTAKDKVERAGISQADDGKKTQEAG ASSSALVEDDKKSDRALPLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTI SGVTYKFGRNEVKIVCACHGTHMTPEEFMRHASADAPGQENSATLPAFPVGNQAASAQ N</aaseq>

Gene Sequence

<dnaseqindica>1605..2598#3052..3413#acccgcctccgccgatccccattccaacccgcgactgcgagcgaggcgagtagggcggcttcgtcgttcgtcctgctgcttccgccgcatccatcctggtgagcacatcctcttccgccgccgtcgcctgcggccgatccccatccatcacgcgcgagctcgtcctggtcctgctgccgtcgcctgcagccgatccccatccatcacgcgcgagctcgtcctggtcctgctgcttccgcagcatccgttacgcgcatcctctttcccatctctccctgtgtctacctacgaacttatttttctcgaatttgtgcgttaaccctagcttctgttgtagaaatctgccttaaaccttaatactagtaacagtttgatgggagcgttaaccctagcttctgttgtagaaatctgccttaaaccttaatactagtaacagtttgatggctcccaaaaaggtttcccatgctagatccgccactgtagtattacgactataagttttttttgttttcacagcaacttaaagaaataagcactgcgcaacacagtagaatagccataaaacaagccttagtgccatggtttggagcattttgctgctggcgtgagaagatgtttccattctgttggttcagcattttagctggcgtttagctagatgtgcaacctaaggacgtctggtttagcaagtttaatgtccaagttattattctatagttagaaataaaggtctgttgattaaattacagtagtttagcaagtttaatcacaccttaatactagtaacagtttgatggctcccaaaaaggtttcccatgctagatccgccactgtagtattacgactataagtttttttttgttttcacagcaacttaaagaaataagcactgcgcaacacagtagaatagccataaaacgagccttagtgccatggtttggagcattttgctgctggcgtgagaagatgtttccattctgttggttcagcattttagctggcgtttggctagatgtgcaacctaaggatgtctggtttagcaaatttaatgtccaagttattattctatagttagaaataaaggtctgttgattaaattatagtagtttagcaagtttaatcaccaattagggttagattcaatcgactggtttggggcaaagtgtttactttattgtagatcttgttgcttaaattacatcggccggagaggttccgacttaacatgctgtagcatcgatgtagtgtattccaagcctctctctctctctaattaacccatccacattatctaaaaaaaattaacccatccaactttttggagatttctttaaaaaaaattaacccatccaactttttggagatttctttggtgggtggtcaggcggtaataacagtttgtttccaaaagttttggagattcagcggatacacatgaaacatgtttgccatgcttagtctcttaccaaaggctttttttttcttgcagatatgacttgttgagtggaaagaatcaatatagtacaatctattttcttctcaatgtgtagaagaaacagtctgtaaccatacatacttattaatacgactagtgaaatctagacatggacgatgagaatggccttgagcttagcttgggtctctctttgggtgggacatcaggaaagtctaaggctagagatgctcctctagaacctaaagcagagcctcaagtggaagagagcagtagcaaaggtgtttcacaaactcctgaggctccttttgtgcattactatcaaacaaatgcagagaaccaagaacacagtagcaagcagagacacagccctgctgcaccaccgtttgggaacttttggggacagccagggagttcttctgttcctgtggcagatggatccaatgaacagaagccagtctctagtaaacggaaattactttctgaggagataagttttcagaagaaacctaatacagctgctgagcaacctgatgcatttagtaagagctctgacggtggtgtaaaaaacgctcctatttcaattagcacggatgatggttcaacaggtgaaaacgaggatgttgcagaatcagaagcagaaggctcaaactcttggttggttgcacagcgtgaagacagtgctaagggatctgttgtcaatagaggatctgacagaaaacgatccagtgatgatgctgcagttggttttcaaggaaagaggcagccaagtttctcaggaagtgaatccagctctggaaaattgccacaaggaaatcctttgtcattgcaagcatcaaatgttgttgctgtgccatatcaagtcccgtctcaggtttcagctcctcccagtattaccaatgcatcaaatttcactccagtatgtacagtgcagttgaggccacctacaaacaatggactagctgttacaatgggcagtacctctcaggtagcttttggttatccagctgtccagctaccaacacttgaaacaagctcttcatgggcttttggtgctccacctcaggctatgtcctcttttactgcaaaagacaaagttgaacgagcaggaatcagtcaagctgacgatggcaagaaaactcaaggttagtttacctgtgaacaacgcccacactctcagaacaaagaacaaaaaatgtactgttacctgttgtggttcatctctaaataacaaatatatttgaagtcaacaagaattaagatacttggtctgggtttgatcactacatttttagcaaaaaaactctatggttatgtcgcaaatgtcgttgggtttggtatgatagaagtatactttgagacatgccactgatctcatttagtttcagaatatttatgagtagttggaagctgcattgctgcttgtatgcatacaagaactgcctttgtctatggtattttatgatctggtaacgtaaaataagtggagattacttcttatgcgctgctgtttttatgcctaaacaatcatatgtttgaatttgaaattttcagtatttacaatttgcatactgattcattttttcccccaacttcagaggctggtgcttcctcttctgctcttgtggaggatgacaagaagtctgatagggcattacctctcatgggttctgctataaggccaggcattgcaccaaatgtcaaattcggaggatctggatcgtatcctgaccttccctgggtttctaccactggtactgggccaaatggcagaaccatatcaggtgtaacatataagtttggcagaaacgaggtgaagatagtctgtgcctgccatggcacccacatgacgccggaggaatttatgcggcacgcaagtgcagatgctccgggccaagaaaatagtgcaactttgccggcatttcctgtcgggaaccaagcagcctcagcccaaaactaattcaccgatctgtatgacggtttcaatgagtgctggactaatacctgttgcgccctttgtgtttatatcctccattccttatactattattattatgtattggtgctcatatgatatttatcttgtaagtttagacacgtcatgttttatgcttgatgttgaggataaatttgttgtatgtctttaacttattattatgcatctttttaggaggatcaaacaagtcggagctttaaataacctgaattccgctgtagccatatggaatcatgtggattttttgccaattgatgttgtggtg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0558800, RefSeq:Os05g0558800