Os05g0578000

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Revision as of 10:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0578000| Description = Similar to PEX14 protein| Version = NM_001062946.1 GI:115465622 GeneID:4339705| Length = 2662 bp| Definition = Oryz...")
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Gene Name

Os05g0578000

Description

Similar to PEX14 protein

Version

NM_001062946.1 GI:115465622 GeneID:4339705

Length

2662 bp

Definition

Oryza sativa Japonica Group Os05g0578000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:28861638..28864299

Sequence Coding Region

28861692..28861767,28861913..28862136,28862251..28862296,28862477..28862508,28862619..28862661
,28862746..28862813,28863438..28863482,28863546..28863614,28863807..28864019

Expression

GEO Profiles:Os05g0578000

Genome Context

<gbrowseImage1> name=NC_008398:28861638..28864299 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:28861638..28864299 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgcttggctccccggaagtcgggatggaggattcgtcggcgactcacctctccgacgaggtgcaggatccaggtcgaggaagctcagatgcttctgttcgtacttctttgcgagattcgacaggaaaggaggctgttgcggccgttgaaccggtgagggaggagctggttcagagcgcggtcggttttctgaaacacccaaaggtagtggcctcttctgatgtccagaggcgttctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggcatttcgacgtttacttagcccatcttcaaactccatgagtccaaattattgcacatatcaaggggtatctgatcattcttcaaaaatcacacaggagaatccttcaacagttacaaaatgtatggatgatgattcagggagacctgagcctgaaactgaatctgtggatcctgtggtgcctcgccacccaaaatcatatatggagatcatggaaatgatacaaaggggagagcggccagatgatatacaggacattaatgatgaccctccaaacccttatcaaccaatctcggaatcccgcatggcaccaaagcccaagccatgggaaaagcagggtcaagaaagttccatctgggagttgaaatctcagtcaatggacaccatcgaatcgagatcagaaattcaacttgacagcgccaaccaatttactgaaacggagaatagatcaaatcaaggggactcactattgctggaagaaacggttgcaggttctgaagctcacacagatgatgctgcctcgacaaagtcgtaa</cdnaseq>

Protein Sequence

<aaseq>MVLGSPEVGMEDSSATHLSDEVQDPGRGSSDASVRTSLRDSTGK EAVAAVEPVREELVQSAVGFLKHPKVVASSDVQRRSFLEKKGLTVDEIDEAFRRLLSP SSNSMSPNYCTYQGVSDHSSKITQENPSTVTKCMDDDSGRPEPETESVDPVVPRHPKS YMEIMEMIQRGERPDDIQDINDDPPNPYQPISESRMAPKPKPWEKQGQESSIWELKSQ SMDTIESRSEIQLDSANQFTETENRSNQGDSLLLEETVAGSEAHTDDAASTKS</aaseq>

Gene Sequence

<dnaseqindica>55..130#276..499#614..659#840..871#982..1024#1109..1176#1801..1845#1909..1977#2170..2382#ggttcgtctagtcgtcttcctactctcctccgatctccaattcttatccaacccatggtgcttggctccccggaagtcgggatggaggattcgtcggcgactcacctctccgacgaggtgcaggatccaggttcgatccataatcttacttgctttcgtcgccacttggtagtgaagctctagttagtctgtagttagggttgtgatttgtgaagggaagcaaaatcagtagctcgatacctaatcgatgaactccatgcttgccatggctctaggtcgaggaagctcagatgcttctgttcgtacttctttgcgagattcgacaggaaaggaggctgttgcggccgttgaaccggtgagggaggagctggttcagagcgcggtcggttttctgaaacacccaaaggtagtggcctcttctgatgtccagaggcgttctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggcatttcgacgtttacttgtaagatttgttcttttcgctgccttgtcggctcttctttttttcagagcaggggtgaatcactggtggttctgacttgattaatttctctaacttagtttctgcaattttcagagcccatcttcaaactccatgagtccaaattattgcacatatcaaggtatgctgtggtcacctgtcaagattgttgattaggtgatggtgttgttctgtgtgattggtcactccaaatgaacttcccctctttaggtttatatatgcacaacggtgctctaaagtgtaaatggcttcatcaagacatgtctaatgacatcgccttgtgttttccttcatttttcaggggtatctgatcattcttcaaaaatcacacaggtcagctaaaaagtacagaaaaatgtttttttcagtccacacttggtatcgatcatgcattatgatgtttatgttgcaagctttaagttatccctttctctttgccacaggagaatccttcaacagttacaaaatgtatggatgatgattcaggtttgctcatgctgcctttccatgagtcatgttgactaatttatccatgttttctaattctgttgttccttcttgcttttatagggagacctgagcctgaaactgaatctgtggatcctgtggtgcctcgccacccaaaatcatatatggaggtcagctatattgagcatcaccttttttttttcctgtcactctagcatgagcgtagaatcgatgtgtttttctttactcctaagcatgctacttgaatatttaccaatgaagtttagagtgtacagttgttactgactgtatcgtgttgcacgatctatgattctagtagtctgtaagtgaacgcaagttacatttgcttgtgctggtgaaaggtcattcaagagtcaagactaccttgctaggaagtgcgctttcttaatagttttagatataaacttgagcactccttcatccactttaatcgctaagtgcagctcaatgctttgctggcatgcacagtagatttttcttccttcttttgatgtaccatatactggacattggagggcaactcatcaacatgttttatatattttggggattatctattgtatgatggtgcaagtaattttagtgtgctcttattaaagtattaggacaaaaacaacttatcagccagaaagttttattatttttttggatttaatgttgtgatgatgagtaaggaatattaaagtatgcagattctgttgctgaaccaaaaattagctcttaactgtcatactggatttgacacttgacagatcatggaaatgatacaaaggggagagcggccagatgatatacaggtatatctgagtttatgcttgtcaagttgactttgtgaccttatcgtttctgtttcaatataggacattaatgatgaccctccaaacccttatcaaccaatctcggaatcccgcatggcaccaaagcccaaggtttgtagttttacatttccagctaaacaaacctttagtagtataggatgtagttcttttgttagcatgatagaaagtatgtacatgtacgtagggactacaaccagcattttatgctgaaattagagtaacttcatgctaggctgttttcggacaacacagttcactcacgtttattttgtcggtaaacagccatgggaaaagcagggtcaagaaagttccatctgggagttgaaatctcagtcaatggacaccatcgaatcgagatcagaaattcaacttgacagcgccaaccaatttactgaaacggagaatagatcaaatcaaggggactcactattgctggaagaaacggttgcaggttctgaagctcacacagatgatgctgcctcgacaaagtcgtaaatgcaaaagcacgtgatgatggaattgaacatgctgggaaactatttcaacatatacttagccaaaaagctcgaatttctagtgcaacagttttctgaaattctctgaacctgctttctctgagctcactgatctgcgtacttccctattgttggaatcagatttagcaggcacaaaagacctcccaattttcgttagctggaacagttatacaatctgtataatgtaatcatgaaaaatatacaaacaacaacatgaaatgttgtgacttgtgaggctc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0578000, RefSeq:Os05g0578000