Os05g0580000

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Revision as of 10:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0580000| Description = Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment)| Version = NM_001062959.1 GI:115465648 GeneID:43397...")
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Gene Name

Os05g0580000

Description

Similar to ADP-glucose pyrophosphorylase (EC 2.7.7.27) (Fragment)

Version

NM_001062959.1 GI:115465648 GeneID:4339718

Length

5484 bp

Definition

Oryza sativa Japonica Group Os05g0580000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:28953374..28958857

Sequence Coding Region

28953713..28953814,28953907..28953967,28954070..28954176,28954275..28954379,28954462..28954548
,28954720..28954800,28954989..28955061,28955149..28955261,28955345..28955438
,28955539..28955594,28955685..28955771,28955881..28955970,28956084..28956254
,28956658..28956777,28956887..28957099

Expression

GEO Profiles:Os05g0580000

Genome Context

<gbrowseImage1> name=NC_008398:28953374..28958857 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:28953374..28958857 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagttcagcagtgtgtttcccttagagggtaaagcatgcgtgagcccaataaggagaggtggtgagggctcagctagtgatagattgaagatcggggacagtagcagcatcaagcatgatagagcagtgaggaggatgtgtcttggttataggggcaccaaaaacggtgcacaatgtgtgctcacctcagatgctggcccagacactcttcatgtccgaacatcattccggaggaactttgcggatccaaatgaggttgctgctgttatattgggtggtggcaccgggactcaactttttcctctcacaagcacaagggccacgcctgctgttcctattggaggatgctataggcttatcgatatccccatgagcaactgtttcaacagtggcataaacaagatattcataatgactcaattcaactcagcatctcttaatcgtcacattcatcgtacgtaccttggtggtggaatcaactttactgatggatctgttgaggtattagccgctacacaaatgcctggggaggctgctggttggttccagggtacagcagatgcagttagaaaatttatctgggttcttgaggactattacaagcataaagctatagaacacattttaatcttgtcaggagatcagctttatcgtatggactacatggagcttgtgcagaaacatgttgatgacaatgctgacattactttatcatgtgctcctgttggagagagtcgagcatctgactatggactagtgaagttcgacagttcaggccgtgtaattcaattttctgaaaaacccaagggcactgacttggaagcaatgaaagtggataccagctttctcaattttgccatagacgacccgactaaatttccctacattgcttcgatgggagtttatgtcttcaaaagagatgttcttttaaaccttctaaagtcaagatatgcagaactacatgactttgggtctgaaatcctcccaagagctttacatgagcacaatgtacaggcatatgtcttcgctgactactgggaagacattggaacgatcagatcgttctttgatgcaaacatggccctttgcgagcagcctcccaagtttgagttttatgatccaaaaactcccttcttcacttcacctcgatatttgccgccaacaaagtcagataaatgcaggattaaagatgcgataatttcccatggctgtttcttgcgtgaatgtaccatcgagcattcgatagttggagtccgctcacgccttaactctgcatgtgagctcaagaataccatgatgatgggtgcggatttgtacgaaactgaagatgaaatttcaagactactgtcagaaggcaaggtccccattggtgtaggggaaaacacaaagataaacaactgcatcatcgacatgaacgcgagggttggaaggaacgtggtcatcacaaacagcgagggtgtccaagaaagtgatcggcctgaggaagggtactacataaggtcgggaatcgtggtgatcctgaagaacgcgaccatcaaggacgggaaggtcatatag</cdnaseq>

Protein Sequence

<aaseq>MQFSSVFPLEGKACVSPIRRGGEGSASDRLKIGDSSSIKHDRAV RRMCLGYRGTKNGAQCVLTSDAGPDTLHVRTSFRRNFADPNEVAAVILGGGTGTQLFP LTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFIMTQFNSASLNRHIHRTYLGGGI NFTDGSVEVLAATQMPGEAAGWFQGTADAVRKFIWVLEDYYKHKAIEHILILSGDQLY RMDYMELVQKHVDDNADITLSCAPVGESRASDYGLVKFDSSGRVIQFSEKPKGTDLEA MKVDTSFLNFAIDDPTKFPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALH EHNVQAYVFADYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSD KCRIKDAIISHGCFLRECTIEHSIVGVRSRLNSACELKNTMMMGADLYETEDEISRLL SEGKVPIGVGENTKINNCIIDMNARVGRNVVITNSEGVQESDRPEEGYYIRSGIVVIL KNATIKDGKVI</aaseq>

Gene Sequence

<dnaseqindica>5044..5145#4891..4951#4682..4788#4479..4583#4310..4396#4058..4138#3797..3869#3597..3709#3420..3513#3264..3319#3087..3173#2888..2977#2604..2774#2081..2200#1759..1971#cccccacatggggcgggcgaaacgccaaacgaaacgaggcgctgccctgccaccttcgcctcacgaacgccagcctcgctgtttcccctccctctcgcaccgctcgttcccgtttgccttctttctctcctcccccccgttcagcttcccgttcaggttcaggcaatcacgcctcctctcctctcctctcctctccttcttcactccactccaacgccccacgccctcccccgctttataagggggagctccacatcaccacccttcccacaccatcgcggcagccaccgcatctttcctcctctttccctggagccatttcctcccctaaagggcctttccttttcttgatctctcttctatcttcgatccatccatccatccggccatccttcctaggtaataacatttcttcctacctctctggacgctgtcttccctgcgcatgtgtgtgcgtgtgcattgtggatgtttctttgatgattctggtggaaaggttgtgggcgcgttctcgcctctcggagttttgcgtgtgctgtttggtcctgaaattgggtggcgaaatgctttctctgttgatgcgtccaagaaatgcacgcgtatctagttttgttgctttgaaatttcgcggcaagtttgggcggtgtgtttctgcaagttttgatatgaatttccgggatggagagcgtgggtggttcttaatttctatattctcatggcatgcagataaaatttcctgaacttaatttgttgcaacaattgttattggcgtataacggtgcatatttatttggatgcgattttgtgcacctatggctgtatcgagcctgtttcttgatgtttgcggtggattgggggtgatttctcccccatttgttttcattttccaacaaatatagggtcgttcttggatcctgtgcaccgtgctcttctctatgcatatttttggcttctgaccagcttcgtttcatcatttctgtccttagaataatcgaaaaacttgcagctttctcgcgttgagaaaagctcccgttcccatttggatgtaaagctacccaaatcccatttggttgtgaaatcctcctgtgcatatgttgtgctttgctctcctgacgacaagaaaaaaaatgttccgtcaagcctaaaaaaaaagattagttttctgaagattcagtttggggcgtcggtgttcgactttgcggctatttctaccaacttgtcatcactcactccgttcaggtatagtagttcatttataaagcgttctgttctactttgcgtcgtcgtcggttcagattttcggaagaagtgagattctaatcccgggtgagctttagatcttgtgattcacatgactacgtcctcaaaagaaggcataaagtcttttctatagctttcttggttgatgcgtagtactactacttcgttccttcgctttcaaaatcttggtggtgtatccatcaagggcccctacactgtcctgtattccgtgatcattgttctgatcccttacactgtcctaattacttatggaccgtgaaaaaagatagctctttttttttgcttgactttgtagttcttttttcagaagcttagagccttagaccaaagaaaggatggtcactttccttgctctaatctagtttttggcctgtatctgccttgtgatgctaaaaatattacatagtgaagaggtatccgagagtagttaattgttaaaggctattgactttgttaccttgcaggtgaatttcaacgatgcagttcagcagtgtgtttcccttagagggtaaagcatgcgtgagcccaataaggagaggtggtgagggctcagctagtgatagattgaagatcggggacagtagcagcatcaagcatgatagagcagtgaggaggatgtgtcttggttataggggcaccaaaaacggtgcacaatgtgtgctcacctcagatgctggcccagacactcttgtaagtttcatactgtcagttatcaaattggtggtttctcactgtccttttgctatcgaatgctattagctgttagcatatctaaaccctgtatgaaaaattattacagcatgtccgaacatcattccggaggaactttgcggatccaaatgaggttgctgctgttatattgggtggtggcaccgggactcaactttttcctctcacaagcacaagggccacgcctgctgtaagatgatacattcaatttctgaggtttattaagtttcaagttgataggctttttgcagtaaaggggtaccatttgcaaggaattctcagtttgatttgcctgctttgagtttgacaagtcgacatgaatcagaagcatggcaattgatatgcatgacaccagttaaaagtttagctaattcagtagcatgtttgagcattgtgtataaattagtatttggctgtggcccaatgattttggtagctggtccccatggtgccctccacggttccactttagccaacatgatttcttttcaagctcaacgctatcaaagactatcatgtggcttgttcagagttcagtcatcttgaaattcctggcctaatctttgtttctttccttttgttgcataacataggttcctattggaggatgctataggcttatcgatatccccatgagcaactgtttcaacagtggcataaacaagatattcataatgactcaattcaactcagcatctcttaatcgtcacattcatcgtacgtaccttggtggtggaatcaactttactgatggatctgttgaggtaattcaccttgacctgtgatgcttatgttcttcgatgatttgcgtggttgttgacttggtgaagaaacagtcacagctcacattaactgaaatgatttttgccaattgaaggtattagccgctacacaaatgcctggggaggctgctggttggttccagggtacagcagatgcagttagaaaatttatctgggttcttgaggtaaatactgtttagaagcacacggtggatctgcagctcatacttggatctgtatcactaaagtaatactcactatgttgtatgtaatgtttctgatgtatctgttcaggactattacaagcataaagctatagaacacattttaatcttgtcaggagatcagctttatcgtatggactacatggagcttgtgcaggtttgtcctggcctcattcttctgtacttttccacatgcttttcttttgaactggctgactcttcaatatatgccattcaccgtttgcagaaacatgttgatgacaatgctgacattactttatcatgtgctcctgttggagagaggtatatcgattgtacaatattccaaaagttagataatattatcagcatttgtcctcagaaaatgcagagcatcctgatttggttttctttattatggtagtcgagcatctgactatggactagtgaagttcgacagttcaggccgtgtaattcaattttctgaaaaacccaagggcactgacttggaagcaatggttagaattaaccttatcccatactcagatatatatttgaacttaattgcagtatctgaagtataagtcattgatcattgcagaaagtggataccagctttctcaattttgccatagacgacccgactaaatttccctacattgcttcgatgggagtttatgtcttcaaaagagatgttcttttaaaccttctaaagtaagaatcttattgcagtagtatggtttctcctacagggcacatgctatagaaatatagaattgtagtctaacagtgtcactttaggtcaagatatgcagaactacatgactttgggtctgaaatcctcccaagagctttacatgagcacaatgtacaggtaaaagtttttaagcttgagcactattatgtgatttcctttcacctgtttgggaagtcatgcctcatgttcaattcagtaatagtccacattcagtctgaattgcctacttgcaccaaatgtagtttgtgcaatcatgtccgccttgtggcgtgaactgaacatccatctgcttttgttgtttataggcatatgtcttcgctgactactgggaagacattggaacgatcagatcgttctttgatgcaaacatggccctttgcgagcaggtatttggtctgcttcaaaattttagcactctcaaactgtagaggtagttggattgtaacacatctgaataatgcatttaatagatctgtacaattgttaagtacagttcagactttgcaacatatttaatactttcattctctatttactcacaagttcctccattgcagcctcccaagtttgagttttatgatccaaaaactcccttcttcacttcacctcgatatttgccgccaacaaagtcagataaatgcagggtatgagtcgcatggaatgaactttctatatcaaactttaatatgcgtgtttcatatctgatttcggaatttgtgcgtgcagattaaagatgcgataatttcccatggctgtttcttgcgtgaatgtaccatcgagcattcgatagttggagtccgctcacgccttaactctgcatgtgagctcaaggtactctctttcaccaatgaaattaaactgaatccatatgcatatgcctgtatagcataattgaacaacactgggattgttgcaaacaacacctgcagaataccatgatgatgggtgcggatttgtacgaaactgaagatgaaatttcaagactactgtcagaaggcaaggtccccattggtgtaggggaaaacacaaagataaagtgagatactgacctgaaggcttgaaccacaatgcattatgaacacatctagcaatatcctgtttcgagcgcgatctaaacccgtcttttgatgcattgtagcaactgcatcatcgacatgaacgcgagggttggaaggaacgtggtcatcacaaacagcgaggtaagcgatcaagcgaaaaggaattccaaagttgcaacctcccaacccatgtttcatacaaaattctgaacactgcaacctgttgctgatagggtgtccaagaaagtgatcggcctgaggaagggtactacataaggtcgggaatcgtggtgatcctgaagaacgcgaccatcaaggacgggaaggtcatataggagagctcgctgatgccacagatctctgaaccctgaacctgcaaatgcagtgcagtgcgtcttttcttgaggggttaggacatgcaagctcgttgattccacatggcagagaactcgagggaagatcccaggaagacggatgatcgagaaagattgtgtagtactagcagttcttcgctcgttaaaatgtgtgtactaaataactaataagctgccccgagtgaagtagcagcagcaactttttggagggtcgttggtgcatctcatgtgtaaataaactcaaaactggtaaaaaaatgtatccatcatgccattatctccattttctgtttcgctgct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0580000, RefSeq:Os05g0580000