Os09g0560000

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Revision as of 07:35, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0560000| Description = Armadillo-like helical domain containing protein| Version = NM_001070457.1 GI:115480656 GeneID:4347846| Length = 525...")
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Gene Name

Os09g0560000

Description

Armadillo-like helical domain containing protein

Version

NM_001070457.1 GI:115480656 GeneID:4347846

Length

5250 bp

Definition

Oryza sativa Japonica Group Os09g0560000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:23080606..23085855

Sequence Coding Region

23080880..23080937,23081021..23081202,23081301..23081996,23082411..23083054,23083476..23083578
,23083653..23083847,23084343..23084966

Expression

GEO Profiles:Os09g0560000

Genome Context

<gbrowseImage1> name=NC_008402:23080606..23085855 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:23080606..23085855 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagtccaatgcggttacctccaaaggcaaggccgtgttcgagctgaagcacaggctggtccaggccatcaacaagattgcagacagggacacctaccagattggattggatgagcttgagaaggccgctgacaccttgcctcctgacatggttggtcccttcttgtcttgcgtggttgacaccgatgccgagcagaagagtgcggtgaggaaggagtgcatcaaggtgattggcacattggctcggtcccatggaagcctagtggcacctcacatgacgaagatggtgaccagcattgtcaagcgcctcaaggatgctgactctgttgtgagggacgcctgtgttgatacctgtggtaccctcgcattgtgtgctagaggctatggggatggtggcgctgcattggttgcgttggtgcggcccttgtttgaatcacttggtgagcagaataggtatgttcaggctggggcagcgtcttgcttggccaaggttattgacgagagcaattacttccctggccctgttctgccgcagatgcttgttcgtgttgttaaactgctcaagaatccccatttcatggcaaagcctgcagtgattgagttgatcagaagtattattcaggctgaaggtgcttctacagagcagtctttaacatctgctctaacaagtattatggatgccctgaagagtagtgattggactacaaggaaagcagcttcaatagctctatctagtattgctctcagttctggatatctggttgcctcctttagaacttcctgccttcgctcccttgaacgttctaaatttgacaaggtcaaaccagtgcgtgatgcaattacccaagccattcagttgtggaaggttattccagggtctgatactcccgagccatcagaagctggatcatccacaaaagaaaacttctttggtgaccatcatgatggtagaagtataaatgatggtggatcacgagacacttctttcaggagagttgatcctgcatcttctgtttctgcaatcagtggcaattctattacttcatcaaagaagagatctcctctgtctatcaataaaatagccctgaataatgctgcaaatcagcaacgctcgaagttgagcgattggcatgttgagatatctgttcctaagcagaatatgataccattagttgattttgaagaaaaggtgtctggcaatggttccatgctaaagggttcaaatagaagtccatatgaaatcgtagacaatgacagcaagtatgagtatgaccccatggatgataaacaagattgctcctctatgtcagaagtagccagcaggagttgtgagacaaagcatgtcacttctgctcaggaatgcgttgaggattgtgattctgcaagagacattgagcaattccccagggctcaaaagagtaagagcatagactccactgttacagatatcacttcacatgggacacatacttgctgtttgggtgcaatgaaagaactatctcatatcaggaagcagcttcaagagatggagaggaagcaagcaaatatctttgatatgttgcaggaattcatgtctaactcagtggagaacatgtcagtattaagcatgaaagtgcataatttggagaatgctgtagacaaaactgtgtatacaattactcaaagtgaaagccgctatcaccttcctggttccaagtttattaagaaccaaagtgccacttcttcaccgagggtttctacttctacacctagatcatctgtggatgctaactataagccaccaccaattcctcatttgaaacaagagaaaaagtggatgcaagatcaaccatcaaagggcttaaacatgggtgtaaaagagggggaatttctaaagagtcatactcatgacaaaactagaaagcctggggttgtgagatcggaaagtgctctgggaagatatgttccaagctcagcaaggactcgagcatcaggggttaagggaaactttccagtttcacttaccaattcctgtgagcagcctgagctgcaaaatgcattgcgtgcttctaaagaatttgatggtaatgatgacatggcgtctgcatatgtagaagccctgaacagtggtgactgtgattatctgattgacgtaatggatagaactggacctgttcttgagaaattgtcacgtgaaacaacaagtgaacttttgagggttatagctggccagtttctgaataaaaaaatgtttgatttggcattgccttggcttcaacaggtagcggatttgagcatgatttataagccaagtcaactttttgtgtctgtgagagcacagaaggagttccttgctttattggaggaagctgcaacaagtggatctacagagccagcaatcagaattgccattgcacagcttgcatttaaactgacaaaagtctgtgaggttgcaccatgcaggaaagttttgagtagagtgtgcagaggaaatgaaactatcatggccactgcgatgtga</cdnaseq>

Protein Sequence

<aaseq>MKSNAVTSKGKAVFELKHRLVQAINKIADRDTYQIGLDELEKAA DTLPPDMVGPFLSCVVDTDAEQKSAVRKECIKVIGTLARSHGSLVAPHMTKMVTSIVK RLKDADSVVRDACVDTCGTLALCARGYGDGGAALVALVRPLFESLGEQNRYVQAGAAS CLAKVIDESNYFPGPVLPQMLVRVVKLLKNPHFMAKPAVIELIRSIIQAEGASTEQSL TSALTSIMDALKSSDWTTRKAASIALSSIALSSGYLVASFRTSCLRSLERSKFDKVKP VRDAITQAIQLWKVIPGSDTPEPSEAGSSTKENFFGDHHDGRSINDGGSRDTSFRRVD PASSVSAISGNSITSSKKRSPLSINKIALNNAANQQRSKLSDWHVEISVPKQNMIPLV DFEEKVSGNGSMLKGSNRSPYEIVDNDSKYEYDPMDDKQDCSSMSEVASRSCETKHVT SAQECVEDCDSARDIEQFPRAQKSKSIDSTVTDITSHGTHTCCLGAMKELSHIRKQLQ EMERKQANIFDMLQEFMSNSVENMSVLSMKVHNLENAVDKTVYTITQSESRYHLPGSK FIKNQSATSSPRVSTSTPRSSVDANYKPPPIPHLKQEKKWMQDQPSKGLNMGVKEGEF LKSHTHDKTRKPGVVRSESALGRYVPSSARTRASGVKGNFPVSLTNSCEQPELQNALR ASKEFDGNDDMASAYVEALNSGDCDYLIDVMDRTGPVLEKLSRETTSELLRVIAGQFL NKKMFDLALPWLQQVADLSMIYKPSQLFVSVRAQKEFLALLEEAATSGSTEPAIRIAI AQLAFKLTKVCEVAPCRKVLSRVCRGNETIMATAM</aaseq>

Gene Sequence

<dnaseqindica>4919..4976#4654..4835#3860..4555#2802..3445#2278..2380#2009..2203#890..1513#ataggcgaggcgaggagaggaggcgacggccgcgagcgcgaggcgaggcttccgactcgagcaaggagatcccactgctccaaccgtacgtacagttcgttcgcgagccctctggtgtttttggttcatgtttgaattgagctttgctcgttggttcgtttattacttcttttttgggtttgtttttatgtgtgtgctaatgtgctctgtgatgtgggagttgggagggaaggggaggattcgaattttatggcattttcggtggttgttcgatttgttttcgtgcaaattttttatttggtggtgagaacgcgtcgggtgattatgttaatttgctccaaaattatatgctccgttagccagtagctttggagctcggcggaggggtttgggttgcgcaccgatgtctagggtttaactgttcaaatgatcatagtgcgatgcgtctaattaagtataagcttgagattgatgcgtgaaagccttgccgcaatagctattcatctcgaatttggtgcattatttggtttcccttgattgatttgggctaagttcatttcctcctgatttggttagctttctgaatcttactgtgtacgatttcaaaattttgacagctccaaatttctcattctaatattgattgctccaatttcaaatttgttcatcaactgtatgtggttccttcattcacattcatgtacgtgttctttcagagatcaggtgatgggtggggaatctacaggaaacacgacctccattccccaatgggagaagccactgttcccctcagtatccatgttactctgagctactgagctctctgctaagttggtgcctcagctgtgtatcttgcagcaagagtgttctagccttctaggctgccaagatgaagtccaatgcggttacctccaaaggcaaggccgtgttcgagctgaagcacaggctggtccaggccatcaacaagattgcagacagggacacctaccagattggattggatgagcttgagaaggccgctgacaccttgcctcctgacatggttggtcccttcttgtcttgcgtggttgacaccgatgccgagcagaagagtgcggtgaggaaggagtgcatcaaggtgattggcacattggctcggtcccatggaagcctagtggcacctcacatgacgaagatggtgaccagcattgtcaagcgcctcaaggatgctgactctgttgtgagggacgcctgtgttgatacctgtggtaccctcgcattgtgtgctagaggctatggggatggtggcgctgcattggttgcgttggtgcggcccttgtttgaatcacttggtgagcagaataggtatgttcaggctggggcagcgtcttgcttggccaaggttattgacgagagcaattacttccctggccctgttctgccgcagatgcttgttcgtgttgttaaactgctcaagaatccccatttcatggcaaagcctgcagtgattgagttgatcagaagtattattcaggtctgaattttgctcttgcatcatcaacaccattcgcttcaagcttatctagtagtacctaattaatgtgctttcagtattttaaggtgattgcattccatgcttatctctggtggttgtttaagtagcttagcataagtaattgcaatggagtaattagtataatgagccaggagtactttattatatgactgctcagtcagtttcacataaaaaaaggagttctcaaaaagtcgagtgtctatttttatttcaaacttctagtttcatcttgagactgttaatatggctgtctctttctatggattttcagcaatacaattgtcaggataattgtgttagctatgttcatccttttggtgtcatagatcaaattttccttcttggaagtagattagtcatattcatcctttgatttcgtcctacaagtgttagccaaaacaggagattgatcttttataacatttcttatttttctgctgtcccacttttcaggctgaaggtgcttctacagagcagtctttaacatctgctctaacaagtattatggatgccctgaagagtagtgattggactacaaggaaagcagcttcaatagctctatctagtattgctctcagttctggatatctggttgcctcctttagaacttcctgccttcgctcccttgaacgttctaaatttgacaaggtcagcatactaaacattcatgctgtaatattttcttgcatatgctacacttatttttctgacttctgtcacaggtcaaaccagtgcgtgatgcaattacccaagccattcagttgtggaaggttattccagggtctgatactcccgagccatcagaagctggatcatccacaaaaggtattacaatccttataagtagatttttggcctggtgtgatcttctgacttctgcaaattaaaagaagagattggatactactttctgaagcttgttgacaatactaatccctttgttttttttagcaatttgtactctcataatactttttagtttcttgagaactagtgcattgaccccaaaagataaggggtttatcaatgatttgctattcaatgttgcttgttgcatgccaagtctatctactgcttaggtctgtccaaggatcaggatttttttccccagatttccagatctctatggtctcttttcttaaattttcttgttagtcctttacgagcttaacatagaatctgtttgaagtttacagcagccacataaatttctcccttttttgtttattgatttcatttatggcagaaaacttctttggtgaccatcatgatggtagaagtataaatgatggtggatcacgagacacttctttcaggagagttgatcctgcatcttctgtttctgcaatcagtggcaattctattacttcatcaaagaagagatctcctctgtctatcaataaaatagccctgaataatgctgcaaatcagcaacgctcgaagttgagcgattggcatgttgagatatctgttcctaagcagaatatgataccattagttgattttgaagaaaaggtgtctggcaatggttccatgctaaagggttcaaatagaagtccatatgaaatcgtagacaatgacagcaagtatgagtatgaccccatggatgataaacaagattgctcctctatgtcagaagtagccagcaggagttgtgagacaaagcatgtcacttctgctcaggaatgcgttgaggattgtgattctgcaagagacattgagcaattccccagggctcaaaagagtaagagcatagactccactgttacagatatcacttcacatgggacacatacttgctgtttgggtgcaatgaaagaactatctcatatcaggaagcagcttcaagagatggagaggaagcaagcaaatatctttgatatgttgcaggtaattcttgttattttgtgttgttttttttattctactctctatagtttggttgtttctggaaaaatgtttatatatgtgatctgattgttaagttcagcaatggtttttcttcagaatgtaatagcaaggttttgattaaagttatgagggaaattatattgtttgaaaatcaataagctctgtgcatttcagttacctatatatataagtccattgccagattaaacaaaaagggaaattgataatgacaataggcatcatgatcttcaactcataccagtgattgtcttttgctatcctccataatatcgtgtaggaaagagcactgcacaagtcaattatgtaatgaaagtataggggggggggggtcctaaatattgtcctaattgcttactttctttcactgtgcaggaattcatgtctaactcagtggagaacatgtcagtattaagcatgaaagtgcataatttggagaatgctgtagacaaaactgtgtatacaattactcaaagtgaaagccgctatcaccttcctggttccaagtttattaagaaccaaagtgccacttcttcaccgagggtttctacttctacacctagatcatctgtggatgctaactataagccaccaccaattcctcatttgaaacaagagaaaaagtggatgcaagatcaaccatcaaagggcttaaacatgggtgtaaaagagggggaatttctaaagagtcatactcatgacaaaactagaaagcctggggttgtgagatcggaaagtgctctgggaagatatgttccaagctcagcaaggactcgagcatcaggggttaagggaaactttccagtttcacttaccaattcctgtgagcagcctgagctgcaaaatgcattgcgtgcttctaaagaatttgatggtaatgatgacatggcgtctgcatatgtagaagccctgaacagtggtgactgtgattatctgattgacgtaatggatagaactggacctgttcttgagaaattgtcacgtgaaacaacaagtgaacttttgagggttatagctggccagtttctgaataaaaaaatgtttgatttggcattgccttggcttcaacaggtaagttcacttgtagtctatttatgtttcgcaataactgctaatgccaagaaagcttatacgctttattcatattgtgggttttattgttgtcctaggtagcggatttgagcatgatttataagccaagtcaactttttgtgtctgtgagagcacagaaggagttccttgctttattggaggaagctgcaacaagtggatctacagagccagcaatcagaattgccattgcacagcttgcatttaaactgacaaaagtctgtgaggttgcaccatgcaggtaatctacattgtccattgaaaatgcctggatgcatctcatctgttctgttacttaatttgaacatcttttctctcctgtaggaaagttttgagtagagtgtgcagaggaaatgaaactatcatggccactgcgatgtgaaatacttcccctagcaatgtaccccctagtgtatgttcaaacttcaatgtcatgctgcagtgattgagtgcacccatttcattttgttgtagccctgtaatctgtgtgacaatgtatactcggtttgggtactatgtgcaagactagatgagttctgcaaattcatctatagtttgctagttaagcttggatcttctgttgctaggaaacggctgtttttagctgtgttgtgagatttggtctcataagtagtgatcattgagcttgtgaattc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0560000, RefSeq:Os09g0560000