Os09g0560200

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Revision as of 07:35, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0560200| Description = Similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7). Spl...")
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Gene Name

Os09g0560200

Description

Similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7). Splice isoform 2

Version

NM_001070459.1 GI:115480660 GeneID:4347848

Length

1732 bp

Definition

Oryza sativa Japonica Group Os09g0560200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:23092024..23093755

Sequence Coding Region

23092248..23093594

Expression

GEO Profiles:Os09g0560200

Genome Context

<gbrowseImage1> name=NC_008402:23092024..23093755 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:23092024..23093755 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctccgaccaccgcggccgtgtccggccggcgtgcagcagcggcagcacgacgtcgacggcgccggcaacgccaagacttccccggaacagaagctcgagttgctggacctgcaggaggaggacgacgagctcatcttcctcgacgccgacgacgaggagggacgccagctgcgcgagaagctggagtcgctggagcgggagttctgcctgctggatgagcagcgggacaacgcgctgttccagattcacgtgctggaagagacggtgcgcttccgcgaggagctcgtcaggcggctgacggcggtcacccccctcgtcgtcgcccagctcgacgaggtcgtcgacgagcaccacgccgtcgtgacgctgggcgacggatgcgagaggaagatgtgcgtcggcgtcgccggctcgctcgaccgcggcctcctcaagccctcggcgaacgtcgcgctgaacggccggtcgctcgcgctcgtcggcgtgcccccctccgacgtcgccgcctgctcggccgcgcggttcctcgtcgcggacgccgacaagccgggcgtcgcctacgacgacatcggcgggtgcgaggcgcagaagcgggaggtgcgcgaggccgtggagctgccgctgacgcacccggagctcttcgccgccgccggcgtcgacccgccgcgcggcgtgctcctgcacggcccgctgggcaccgggaagaccatgctcgccaaggccgtcgcgcgggagacctcggcggcgttcttccgcgtgaacgccgccgagctcgcgcggcacgacgggccgagggtggtgcgcgacctgttccggctcgccagggacatggcgccggccatcgtcttcatcgacgaggtggacgcgatcgcggcggcgcggcaaggcggcgacgacgacgacggcggtgccaggcgccacgtgcagcgcgtgctgattgagctgctcacccagatggacggcttcgacgagtccaccaacgtgcgggtgatcatggcgacgaaccgcgccgacgacctggacccggcgctgctccggccggggcggctggaccgcaaggtcgagttcacggcgcccgagagcccggaggagaagcggctggtgctgcagacgtgcacggcggggatgagcctggacggcgacgtcgacctcgacgccctggcggcgcggcgcgacaagctcagcgccgccgagatcgccgccgtgtgccgcaaggccggcatgcaggccgtgcgcgacaggcggggcgccgtgacggcggacgacttcgacaagggatacctcgccgtcgtcggcaagaagcccggcgacgccgccaccgagttccacttctacaactga</cdnaseq>

Protein Sequence

<aaseq>MALRPPRPCPAGVQQRQHDVDGAGNAKTSPEQKLELLDLQEEDD ELIFLDADDEEGRQLREKLESLEREFCLLDEQRDNALFQIHVLEETVRFREELVRRLT AVTPLVVAQLDEVVDEHHAVVTLGDGCERKMCVGVAGSLDRGLLKPSANVALNGRSLA LVGVPPSDVAACSAARFLVADADKPGVAYDDIGGCEAQKREVREAVELPLTHPELFAA AGVDPPRGVLLHGPLGTGKTMLAKAVARETSAAFFRVNAAELARHDGPRVVRDLFRLA RDMAPAIVFIDEVDAIAAARQGGDDDDGGARRHVQRVLIELLTQMDGFDESTNVRVIM ATNRADDLDPALLRPGRLDRKVEFTAPESPEEKRLVLQTCTAGMSLDGDVDLDALAAR RDKLSAAEIAAVCRKAGMQAVRDRRGAVTADDFDKGYLAVVGKKPGDAATEFHFYN</aaseq>

Gene Sequence

<dnaseqindica>225..1571#atgttgcatcttcatcccctgcaaacctacaagggagaaaaaaaatagttggcatgtattaatcggaatccgagtctcacatgtattaatcggaatccgagtctccgactcggatttgtactagctctcctcctataattcacgcgccaccgcttgcttgcattgcatgcgttctttgacacaaggacaacgtcgcagattcgcagccaaggacgtcgtccgtgatggcgctccgaccaccgcggccgtgtccggccggcgtgcagcagcggcagcacgacgtcgacggcgccggcaacgccaagacttccccggaacagaagctcgagttgctggacctgcaggaggaggacgacgagctcatcttcctcgacgccgacgacgaggagggacgccagctgcgcgagaagctggagtcgctggagcgggagttctgcctgctggatgagcagcgggacaacgcgctgttccagattcacgtgctggaagagacggtgcgcttccgcgaggagctcgtcaggcggctgacggcggtcacccccctcgtcgtcgcccagctcgacgaggtcgtcgacgagcaccacgccgtcgtgacgctgggcgacggatgcgagaggaagatgtgcgtcggcgtcgccggctcgctcgaccgcggcctcctcaagccctcggcgaacgtcgcgctgaacggccggtcgctcgcgctcgtcggcgtgcccccctccgacgtcgccgcctgctcggccgcgcggttcctcgtcgcggacgccgacaagccgggcgtcgcctacgacgacatcggcgggtgcgaggcgcagaagcgggaggtgcgcgaggccgtggagctgccgctgacgcacccggagctcttcgccgccgccggcgtcgacccgccgcgcggcgtgctcctgcacggcccgctgggcaccgggaagaccatgctcgccaaggccgtcgcgcgggagacctcggcggcgttcttccgcgtgaacgccgccgagctcgcgcggcacgacgggccgagggtggtgcgcgacctgttccggctcgccagggacatggcgccggccatcgtcttcatcgacgaggtggacgcgatcgcggcggcgcggcaaggcggcgacgacgacgacggcggtgccaggcgccacgtgcagcgcgtgctgattgagctgctcacccagatggacggcttcgacgagtccaccaacgtgcgggtgatcatggcgacgaaccgcgccgacgacctggacccggcgctgctccggccggggcggctggaccgcaaggtcgagttcacggcgcccgagagcccggaggagaagcggctggtgctgcagacgtgcacggcggggatgagcctggacggcgacgtcgacctcgacgccctggcggcgcggcgcgacaagctcagcgccgccgagatcgccgccgtgtgccgcaaggccggcatgcaggccgtgcgcgacaggcggggcgccgtgacggcggacgacttcgacaagggatacctcgccgtcgtcggcaagaagcccggcgacgccgccaccgagttccacttctacaactgatcgccggcttcgcttagcaacacagctcatatctttacgcctttcactaggaaaaggcattgtatagctcctgcttgggcaacgtctcaaatgtatacaattattctgtaattcactgaacaaatttaagatagaaacaccagcaattttaccttcttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0560200, RefSeq:Os09g0560200