Os05g0583500

From RiceWiki
Revision as of 10:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0583500| Description = PX-associated domain containing protein| Version = NM_001062982.1 GI:115465694 GeneID:4339743| Length = 7761 bp| De...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0583500

Description

PX-associated domain containing protein

Version

NM_001062982.1 GI:115465694 GeneID:4339743

Length

7761 bp

Definition

Oryza sativa Japonica Group Os05g0583500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:29094525..29102285

Sequence Coding Region

29094963..29095091,29095844..29095926,29096150..29096309,29096560..29096695,29096807..29096886
,29097086..29097459,29097553..29097598,29097685..29097753,29098194..29098338
,29098456..29098556,29098634..29099879,29099955..29100094,29100535..29100712
,29100811..29101216,29101995..29102112

Expression

GEO Profiles:Os05g0583500

Genome Context

<gbrowseImage1> name=NC_008398:29094525..29102285 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:29094525..29102285 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacggcaggcggcccggggagggcgcacacggtccgcgacctcgcggaggaggggaagaagcgggccgtgctgctcctcgtcttcgccttcggcctcgccttcctcatgtccctgacaagctcctcagtttggattaacttgccatttgccacagctttgattgttttatttcgctacatatcacttgactatgatttccgtagaaagagcacaactaccacagataacgatgccagtcgcgcacttaccaaaacaaaaagtattgaaccaaataaaatcccctctattcaaaaggatggaaagtcagattggaagagcaaggtgaattcccctccagttgaagctgcaattgaacagttcacaaggcaccttgtcacagagtgggtaacagatctatggtactcccgtgtaacacctgacaaggaaggtccagaggaactcatcaatatagttaataatgtcctgggagagatatcagtccgggcaagaaacgttaaccttatcgctctgctaaccagggatctgattgatcttatatgcaaaaatttggagctttatcatttatgccaagccaagattggaaaagagaagtttgttaatctctcgacggagcgtcgtgatgctgaactaaaactgacccttataaccgaaaacaagttgcatccagctttattttcagccagtgctgagcacaagatcctacaaagtcttgctgatgggttgatatcagtaacagcaaaacctcaggatctgcagtgttacttcttccgatgtactgcacgagaacttcttgcatgtgcagtcatgagacctgtcgtgaatttagcaaacccaaggtttataaatgaaagaattgaattgttggctctttctcatgccaacaaggcagaaagaggagttgcagaatcattggagcatgctacaatggttaagcaaagggaacctcctatgccaactgttgatgaacttgctgcactaatagatcccacgagttcaggggttgaacttgtgcgatttagtcaggatcagtccaaagctgcaccagatacgcaactcagtaatactagacatccatctaacctcaaaccaaattcctctagtacttctttgaccaatagttcacatccacttgagtctagcattttatcttccactacccatggtcattcgaattccagtatgtcattgcattcccaaagtagtggcaggacaactgcagaatgttatgagggagaatgggcacagaccatggatatcagctcccagcaaaaaagtcaagccctagcacctgagcaccttgagaacatgtggactaaagggaagaattacaaatcagaaaatgtaaaacatgttgcgagagtaccttccaaatcttcttctctaggcacttctccagtgcagcagtcagctccttacagcacttctgttggtcattatcctagtgctccacaaaggcagacaactatgtctcgttctgatgaccaacatttgattaaacactcaactactgctgcatacttaaatggcaccaatcatctgaggatggctttatccagagaaagtgcagatcatgccagccaagaagactttggagtggacagtgagagttcatatgccactgaggaggatgagaataacaatgtgactgggcttgactctccagtaacgagagtttgggacagcaaaagtaaaggaaatgccacctcatcacatatacaccatccacttgaatctccaggtttccataaagcaaagaagaacagaagtcatattggcaagttgaaaatgacaaaaacttcaggaagaaaaaggtcaaggtcaaattctcaaaagcctcctgtctggcaagaggtggagagatcatctttattggtgggggatgatttaaatatactgaatacatcggcagatgattcaaggacggatggactgtatgatgatactgaggtggaaagtatgtcaaggatgtttagtggtgcgaatgcttcatctttgtcattggcatcaactgactcttcatattcatcaaattattccaccactaatgtgctagaagactcttatttgaagttgaaatgtgaggtggtaggagctagcattgtgaaaagtggatctggcatgtttgctgtatattctgtttctgtgactgatgccaatggtaatagttggtccatcaagaggagatttcgccatttcgaagagctacatcggcgtttgaaagaatattctcagtacaatcttcacttgcctccaaagcacttcctttcgtcagggctagaggtccctgttgttcgagagagatgcaagttgcttgacatatatctaaagaagcttcttcagattcccactgtttcaagctgtatagaggtctgggattttctaagtgttgattcacagacatacatcttcactgacactctctcagttatccagacgttgtcagtcaatttagatgaaagatcaaaagagaagaatacaaaatcattcaattcttcccaagctttgaatgggaatttggtctctgctagccaatctttgcatgtacataaagatgataccatgccgaaggagaaggataaagactttgatgctgttgatggtttgagatcaaggaagaggaacacggaacagaatttaggaattggtgttggcaacacaaatgccaatcttcatgaagacctctctggaagtgaccctgaacagaacgagcattcatttataataaattcgggaaattctaaaaagacactgtcaagtgaaactgactacccgcctcaaagtttggagtctgatggatactcagtagctcctaatgattggatggctccaaatcttagtgtgcccttatttcatttggttgatgtggtttttcagctccaagatggtggctggatcaggaggcaagcattttgggtagtgaagcaaatactgcaactgggaatgggagacacatttgatgactggcttgttgagaaaatccagttacttaggaaggggaggattgttgcttttgcagttaagcgggttgaacaaatactctggccagatggaattttcctgacaaaacatcctaagagaaaagcagcaacacctccacctggttcccagagtaacggcatggccaactatctgactgatgaacaacgactagaggatgctcatcgtgcaaattttgtccatgaactaatgatagagaaagcaccatctgcgttagtgagtctggttggtcgaaaggagtacgaaagatgtgctcaggacgtctacttctttcttcagtctccagtttgtttgaagcagctagcatttgaagtcctagagctccttgtactagctgcatttccagagttggatgacattgtgaagaagtggcatgaagacaaacagcagttgtacgccctggaataa</cdnaseq>

Protein Sequence

<aaseq>MATAGGPGRAHTVRDLAEEGKKRAVLLLVFAFGLAFLMSLTSSS VWINLPFATALIVLFRYISLDYDFRRKSTTTTDNDASRALTKTKSIEPNKIPSIQKDG KSDWKSKVNSPPVEAAIEQFTRHLVTEWVTDLWYSRVTPDKEGPEELINIVNNVLGEI SVRARNVNLIALLTRDLIDLICKNLELYHLCQAKIGKEKFVNLSTERRDAELKLTLIT ENKLHPALFSASAEHKILQSLADGLISVTAKPQDLQCYFFRCTARELLACAVMRPVVN LANPRFINERIELLALSHANKAERGVAESLEHATMVKQREPPMPTVDELAALIDPTSS GVELVRFSQDQSKAAPDTQLSNTRHPSNLKPNSSSTSLTNSSHPLESSILSSTTHGHS NSSMSLHSQSSGRTTAECYEGEWAQTMDISSQQKSQALAPEHLENMWTKGKNYKSENV KHVARVPSKSSSLGTSPVQQSAPYSTSVGHYPSAPQRQTTMSRSDDQHLIKHSTTAAY LNGTNHLRMALSRESADHASQEDFGVDSESSYATEEDENNNVTGLDSPVTRVWDSKSK GNATSSHIHHPLESPGFHKAKKNRSHIGKLKMTKTSGRKRSRSNSQKPPVWQEVERSS LLVGDDLNILNTSADDSRTDGLYDDTEVESMSRMFSGANASSLSLASTDSSYSSNYST TNVLEDSYLKLKCEVVGASIVKSGSGMFAVYSVSVTDANGNSWSIKRRFRHFEELHRR LKEYSQYNLHLPPKHFLSSGLEVPVVRERCKLLDIYLKKLLQIPTVSSCIEVWDFLSV DSQTYIFTDTLSVIQTLSVNLDERSKEKNTKSFNSSQALNGNLVSASQSLHVHKDDTM PKEKDKDFDAVDGLRSRKRNTEQNLGIGVGNTNANLHEDLSGSDPEQNEHSFIINSGN SKKTLSSETDYPPQSLESDGYSVAPNDWMAPNLSVPLFHLVDVVFQLQDGGWIRRQAF WVVKQILQLGMGDTFDDWLVEKIQLLRKGRIVAFAVKRVEQILWPDGIFLTKHPKRKA ATPPPGSQSNGMANYLTDEQRLEDAHRANFVHELMIEKAPSALVSLVGRKEYERCAQD VYFFLQSPVCLKQLAFEVLELLVLAAFPELDDIVKKWHEDKQQLYALE</aaseq>

Gene Sequence

<dnaseqindica>7195..7323#6360..6442#5977..6136#5591..5726#5400..5479#4827..5200#4688..4733#4533..4601#3948..4092#3730..3830#2407..3652#2192..2331#1574..1751#1070..1475#174..291#gtccccgcaaaacagaaagtccccggaaaaggatcgcctcgccggccgccgttccctccccacaaacccaaaatcaacagccggccggccaccgccaccgccaccgccacctccccttcctcctcctctcccgcacccccgccgccggcagccgcgcggcggagctgccggcgatggcgacggcaggcggcccggggagggcgcacacggtccgcgacctcgcggaggaggggaagaagcgggccgtgctgctcctcgtcttcgccttcggcctcgccttcctcatgtcccgtgagttctcccaaaccctaagatagcgcttgtctgctggtagcttcgagctctccgataggtagggaggggacggtgatttttgtttgccgatgcatttgttcggtcaccagttccgtgattagggtttatgttggttgctcgttccgatgcatctgatttgaaccgtgtttctcgggtaatcatcctccctagatgcggtaacggcggtagtgatgtactactgatttttgtttcaccatcgtttctactcgctgttgttagggcgtttgttccagcggttgttgcgttgagctcttcattttctgttcattgttgtttttcgagtagagagattagtttgtcccacaggtgctgtaaattgctgcattgagcagttggtaaatttggggtacacttggtgtccgagcggatcatttttcgtgttatatgatgtgttacttcttagagacatcagaaattttgttgctgattgtccattctatgggttcatgcctgtggtggcatgttggtagttgtaaatttgtttaatgtataatgttgcatacaacactaattatatgttagactgcatgattgagtgtagagacaagcgagataagcactaagtatgtcagttcaattttggccttgtggctttgcctatgccagggatcataaagcatacctctgtggaagttgaaaaaaagtgctacatttcgaagaaaagctaagatccatgtttgtttaacccagtattctactgaactaatgtaatgactaattttgtccattgcagtgacaagctcctcagtttggattaacttgccatttgccacagctttgattgttttatttcgctacatatcacttgactatgatttccgtagaaagagcacaactaccacagataacgatgccagtcgcgcacttaccaaaacaaaaagtattgaaccaaataaaatcccctctattcaaaaggatggaaagtcagattggaagagcaaggtgaattcccctccagttgaagctgcaattgaacagttcacaaggcaccttgtcacagagtgggtaacagatctatggtactcccgtgtaacacctgacaaggaaggtccagaggaactcatcaatatagttaataatgtcctgggagagatatcagtccgggcaagaaacgttaaccttatcgctctgctaaccaggttgtgaaaagtctgatctgtcacatgaagtacatgaaacagtgcaaaatttaagaacaatggatgtcttacagtaaaatcttctctacctttttcagggatctgattgatcttatatgcaaaaatttggagctttatcatttatgccaagccaagattggaaaagagaagtttgttaatctctcgacggagcgtcgtgatgctgaactaaaactgacccttataaccgaaaacaagttgcatccagctttattttcagccagtgctgagcacaaggtaagaccgaatggatcatgaagcttccagtttcttgtagtaagttattgtgttttcagatctcaatgtgatcggaaatttgatggaccgctagggctggaattttgattatgtttcacaagtaccacggatgataacaatatgcaccataacactcctgcttcttcacatcgataatcgattatgattatttcttgaatttcatatatacctgtatattacccagctgcccatggtgttgaatctgcgcacggtataagctgagtgttgctaggttaatacatatttaaaaatccggtagattaatcatatgcattcctggtgatctcttgtgtaaactgtttgggaggtatgacatattaaattgtattcccattgtttatctgtttaagcatcaaagatcatatgataacatagtatatgtttatttttccttgcagatcctacaaagtcttgctgatgggttgatatcagtaacagcaaaacctcaggatctgcagtgttacttcttccgatgtactgcacgagaacttcttgcatgtgcagtcatgagacctgtcgtgaatttagcaaacccaaggtagtgagccactgctcctgctctacttgattctgtttttttctgttgtcatcattttgagatgtaaatttgcaggtttataaatgaaagaattgaattgttggctctttctcatgccaacaaggcagaaagaggagttgcagaatcattggagcatgctacaatggttaagcaaagggaacctcctatgccaactgttgatgaacttgctgcactaatagatcccacgagttcaggggttgaacttgtgcgatttagtcaggatcagtccaaagctgcaccagatacgcaactcagtaatactagacatccatctaacctcaaaccaaattcctctagtacttctttgaccaatagttcacatccacttgagtctagcattttatcttccactacccatggtcattcgaattccagtatgtcattgcattcccaaagtagtggcaggacaactgcagaatgttatgagggagaatgggcacagaccatggatatcagctcccagcaaaaaagtcaagccctagcacctgagcaccttgagaacatgtggactaaagggaagaattacaaatcagaaaatgtaaaacatgttgcgagagtaccttccaaatcttcttctctaggcacttctccagtgcagcagtcagctccttacagcacttctgttggtcattatcctagtgctccacaaaggcagacaactatgtctcgttctgatgaccaacatttgattaaacactcaactactgctgcatacttaaatggcaccaatcatctgaggatggctttatccagagaaagtgcagatcatgccagccaagaagactttggagtggacagtgagagttcatatgccactgaggaggatgagaataacaatgtgactgggcttgactctccagtaacgagagtttgggacagcaaaagtaaaggaaatgccacctcatcacatatacaccatccacttgaatctccaggtttccataaagcaaagaagaacagaagtcatattggcaagttgaaaatgacaaaaacttcaggaagaaaaaggtcaaggtcaaattctcaaaagcctcctgtctggcaagaggtggagagatcatctttattggtgggggatgatttaaatatactgaatacatcggcagatgattcaaggacggatggactgtatgatgatactgaggtggaaagtatgtcaaggatgtttagtggtgcgaatgcttcatctttgtcattggcatcaactgactcttcatattcatcaaattattccaccactaatgtgctagaagactcttatttgaagttgaaatgtgaggtattacattctccttttagttatcctggtcctgataactatagatggcacatatatttattcaatttcttattcaggtggtaggagctagcattgtgaaaagtggatctggcatgtttgctgtatattctgtttctgtgactgatgccaatggtaatagttggtccatcaagaggaggtgattatattctagttttgtattcacgtgagctgtaacagatattgcacctatgattattcaaacgtggtgatacttctttttaactggacttgcactattttttgaccttatcagatttcgccatttcgaagagctacatcggcgtttgaaagaatattctcagtacaatcttcacttgcctccaaagcacttcctttcgtcagggctagaggtccctgttgttcgagagagatgcaagttgcttgacatatatctaaaggtgtttttcttgtgctgtttgaagattccaagttcattttttcaatcgctccataccttataattcgaacttaagaccaactttcatgaggcctaaaacgatgcaaacatatcgcaagcagcagagagttttcttgctattttcttcggaggtataccagatagtgtgcttcttagaattcttcagacgtatgaatagacttgcaagcatgcatgtgcagctaattacatcttcatcgatgttagtttgttggcttgttatatatttagtaaacatctgtgagctttgttttctgttctcctgttgctatatggtaactttattttttttccatgttttgcttcaagtgtttcgttgtctgaacataatgcatgcttatgaaatttgaatgctcatttaaacaaaacacacttctaatcacatgattatttgttctacagaagcttcttcagattcccactgtttcaagctgtatagaggtctgggattttctaagtgttgattcacaggttagtgttttctttaatcttgttgcactcacccgttgaaactggtatattataattcaataacttgtcaaatgtcctcgctgcagacatacatcttcactgacactctctcagttatccagacgttgtcaggtgaataatccccttttagttgagtagctaatctattttttaaaccgtttgcgttttcatgctatttaatgcccattctgtgatatcacacagtcaatttagatgaaagatcaaaagagaagaatacaaaatcattcaattcttcccaagctttgaatgggaatttggtctctgctagccaatctttgcatgtacataaagatgataccatgccgaaggagaaggataaagactttgatgctgttgatggtttgagatcaaggaagaggaacacggaacagaatttaggaattggtgttggcaacacaaatgccaatcttcatgaagacctctctggaagtgaccctgaacagaacgagcattcatttataataaattcgggaaattctaaaaagacactgtcaagtgaaactgactacccgcctcaaagtttggagtctgatggatactcagtagctcctaatgatgtaagttatagtaattagttctactgccacattttgttatcgttcttgcatttgagcagtcttttgttcctccatttttgttcttttactttaattgtacgtggtgcaccagctgcctgccttataacttcaaaattaattgcacatggtgcaccagctaacctgcctgactaataacttcaaaactactataatgcagtggatggctccaaatcttagtgtgcccttatttcatttggttgatgtggtttttcagctccaagatggtggctggatcaggtacatcattataatttctaacttttagcgtatctaactttagtatttgcacttgtagaataaacccccaagtaaaatagttcctactgtcgttcttctttttatttttaggaggcaagcattttgggtagtgaagcaaatactgcaactgggaatgggagacacatttgatgactggcttgttgagaaaatccagttacttaggaaggggaggattgttgcttttgcagttaagcgggttgaacaagtaagtgtcaaatccttagcaatgcaggtgccaaggtgccagcagagtgaaagggaactgttttctttgatgcagctaaataaatcatattataagactttctagcattacccaaattcatatagatgttaatgaatctagacacacatatgtctagattcattaacatatatatgaatgtgggtaatgctagaaagtcttataagtctttggtctgaattgcataattttctaatttcactctgtgcagatactctggccagatggaattttcctgacaaaacatcctaagagaaaagcagcaacacctccacctggttcccagagtaacggcatggccaactatctgactgatgaacaacgactagaggatgctcatcgtgcaaattttgtccatgaactaatgataggtgaacttcatacgtaatattattctatgggtgatgctacaccactttattttgttaaaatatattgttttccctcttagtttgcttccgtagttgtagagatgtaatgattcccttctaataacagacttgttgcctgaatttgaatgcttcataactgcttttagtctttaaagtccgcatgttgttttaacactaccatcttactgttttatctgcacagagaaagcaccatctgcgttagtgagtctggttggtcgaaaggagtacgaaagatgtgctcaggacgtctacttctttcttcaggtaaatatgcccagaggattcaggtcatacctttttttttgcgaggaaaaaaagtagatcatactggatgcaaatttaccattttctgagcattctgcatgatattaccattagaactcacaactttcttcaaaagaaacactgaaatcattatttttttttaagcagctaaggtaggcagtcttaacatcacatgcctcatgttgggggtgttgtgagtttaaccatgtttttgtagaagttagggtactagtgtatctcacagaaattcatagagaccttcaataacaagctcaatcagcatctacctgtgtagagtagtaatgtttttgaaaagtaaatgtatatctaataatgtgacttgattaaacttctctgaaccaatttgggagtttgttgaagcaataatatttatacgaaactgggataccttttccacaaatgtatgtccttgtggcatgcacgtactcactttgacctaaactgcctaaaggtatgtagatttggccagagtatatggacaggttgattgtaaaagatgatttcgtgatattattataaatcataaagtttttgtaacatacgcatgggacacggctataaatattgatgtctctctctgtgtctctcttaaactaaaaaacatgtatttgtgaaaagaaaattcttaggaaacaaccttaaggtcaaatacagtagcatcagtaactatatgatccttgactgatgtttggagtttattttctgtacagtctccagtttgtttgaagcagctagcatttgaagtcctagagctccttgtactagctgcatttccagagttggatgacattgtgaagaagtggcatgaagacaaacagcagttgtacgccctggaataatttttcatggtgaacgaattattccgcagggtcagatcaaacacgtatgcttgatgcagagtgcagatccattccagtgtaaataagggaatcccgaaatcagtgctgttttgacatttctgtttaaatggaggcgacttcgtgcagtgtgaatatgattagttagcagtttgtgagaacggtcccttctcccccatggaccagtaggccgtttttttgttcgacagactggtctctctttttttttctcatagaatcatagagtttggtatacataatgcagcttgaaagaaagaggtcacacagtatttttttactgtaggtgtagggttgatgtactttttgttagcgtctgttttttgtcccctgtgggtgttaccaaattttgtaactccgcattacgttgaatgaaataaagaagtgatccaggaattcctc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0583500, RefSeq:Os05g0583500