Os05g0594200

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Revision as of 10:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0594200| Description = Similar to Cation/proton exchanger 1a| Version = NM_001063041.1 GI:115465812 GeneID:4339806| Length = 5181 bp| Defi...")
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Gene Name

Os05g0594200

Description

Similar to Cation/proton exchanger 1a

Version

NM_001063041.1 GI:115465812 GeneID:4339806

Length

5181 bp

Definition

Oryza sativa Japonica Group Os05g0594200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:29670239..29675419

Sequence Coding Region

29670728..29670768,29670916..29671009,29671136..29671252,29671656..29671709,29671815..29671931
,29672075..29672215,29672307..29672725,29672811..29672839,29673192..29673259
,29674623..29674904

Expression

GEO Profiles:Os05g0594200

Genome Context

<gbrowseImage1> name=NC_008398:29670239..29675419 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:29670239..29675419 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccagtgtcgcggatgatgatggagtcgaatacgatggccaaggagatggccgtgcggcaccacctccttccggggtctcctcgccgccgcaccgcacacaacctctcatcttcctccctccgcaaaagctccgacgcctccctcctccacaaggttccctgcgccgccctccgctccctcctcgccaatctcaacgacgtcctcctcaccaccaggctcttcctcctcttccccgccgtcctcctcgccatcgccgccacttacctccacttcggacaggtgtgggtgtttgtgcttagcttaatcggcctcgttcctcttgctgagcgactcagcttcctcaccgagcagattgcattttacaccggtcctactgtgggaggactactgaacgcgacatttgggaacgtgacggaggtgataatcgcgctgttggcgctgcgagaaggaaagattgaggtggtgaaatgctccctgctgggatccatcctctccaacctgctgcttgtcctcggcacctccctcttcctcgccggcatcgccaacctccgcgcccaccagccgtacgacaccaagcaagctcacgtcaacaccgccctcctcatgctcgccgtcctctgccactccctgccgctcatgctcaggtacgccgtcacctccggcgaccacgccatcgtctccggcgacgccgccctccacctgtcgcgtgcctgcagcatcctcatgctcatcgcctacctggcctacctcttcttccaactcaacacgcatcgccagctgtttgagccccaacaggttgaggatgatgacgacgatgatttagtgatcgctcaagatgatgagccagtactgggattctcgagtgccatgatttggctggctctcatgactctcctgactgcgctcttgtcagggtatgttgtgagcacaattgaggcggcctcagaatcatgggaactatcagtgagcttcattagcatcatcttgcttcccatcgttgggaacgcagcagagcatgccggtgccgtcatatttgctctcaagaacaagatggatattactctcggagtgtctttgggctctgccacacagatctccatgtttgtggttccagtgagtgtgattgtagcctggactatgggaatcccaatggatcttgatttcaacctgctggagactggctctctgtttctagcaatattagtgacagccttcaccctccaggagggagaatcacattatctgaagggattgattcttgtcctgtgctacgctgtcatcagcgtgtgctttttcgttataagacggcgttctgcaggagggacggacggtgttcaccatctggatgtgattgtgtag</cdnaseq>

Protein Sequence

<aaseq>MPVSRMMMESNTMAKEMAVRHHLLPGSPRRRTAHNLSSSSLRKS SDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSL IGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSL LGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYA VTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFEPQQVEDDDDDDLV IAQDDEPVLGFSSAMIWLALMTLLTALLSGYVVSTIEAASESWELSVSFISIILLPIV GNAAEHAGAVIFALKNKMDITLGVSLGSATQISMFVVPVSVIVAWTMGIPMDLDFNLL ETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRRRSAGGTDGVHHLD VIV</aaseq>

Gene Sequence

<dnaseqindica>4652..4692#4411..4504#4168..4284#3711..3764#3489..3605#3205..3345#2695..3113#2581..2609#2161..2228#516..797#ggattggtttctttctgctctgttgcagctccgttgtctatggtaggtaccttttggacggaggttttgcatttgcctagttactagtaactgcataattaacaggaggagtactaccaagaatgcatactaattattcgcgtgatattttgtacgtttaagtttagagaacccgggattcgaccagaccatcagtccactctctctctctctctgcttcttcttgtgttgtgcttgtgcctcctcattattaatatctgtactccatattctactactgcatgctggagtactctggtcatggagcatttgacatttgcatccaccccgatgagctgagctgctccattaatatactattcctcctcaattagtcattcactacatacatacagcaaaatcctagcaccacgacggcggccgcatttgtatgaaatcgatagatcgtctctctctctctctcatccaaccaaccacgcacagcgactcagcgagcgaggaacaactagagcttgatgccagtgtcgcggatgatgatggagtcgaatacgatggccaaggagatggccgtgcggcaccacctccttccggggtctcctcgccgccgcaccgcacacaacctctcatcttcctccctccgcaaaagctccgacgcctccctcctccacaaggttccctgcgccgccctccgctccctcctcgccaatctcaacgacgtcctcctcaccaccaggctcttcctcctcttccccgccgtcctcctcgccatcgccgccacttacctccacttcggacaggtaccctcctcatccatctctctccaatttacgttgctcgtccattcttatgacaagccacaagcatgctcatatcaatactagtactaggcaaggaactgtggtcgataatcccagcccttttttttttttacggatgcgcaaaagaattacacgtcaatatattagaagaaaaaagtataattacacaacacaatcagccagaccggcttatactagagtaagagagaaaaaacaaaataaaaagctaaagcttaaaaaaactacggggctaaacacaaaaaaactccaattgttggccaagccctataatccctacccatggcgcccatcgtatcgttaggcagtgaaggtcgtgagtcttagctcttgaacatttatgttaccgcaagataaactgcatttgtctcatgggtttcaacgatgtttggtttgttcgttagattcgagataagaaagatgtgagtagtgcgtactgtgtcgctgagaaatatgtttggggccatgttcatcaagagatgcactaaattacgtcaaaccaaagtaaattaggagggtattttaaacttagcataacaggtttttttttataattttccaaaaaaaaaaaacactccaccaacaacacatgacgaatacaagatcgagccggatgatggcgattagattaatttgtactagctgagtgcatgtgctcgcgcatgtggtgaagttgcctgcagcctgtgaaaccctattaaaatacaaacagatggaatcatggaattgcaacaattaagcaagttgacacttgacacacccatcacatgcatggccaggctaatattaatccccctcctcacggtcacggatttttcgtcgtcgcatctcagccatatggcaacggtgcgtcctagatacactccactagtactgtactaaccaaaaactactgtaacatccctaagctaaaggcctgtttagatccctgtgaaatttttcaccctgtcacatcaaatgtttggacatatacatgaagtattaatataaaaaaaataactaattacacagattgtgtgtaaattacgagacaaatcttttaagcctaattatttcatgatttgacaatgtgatgctacagtaaacatttactaatgatagattaattaggctaataaatttatctcacagtttacatgcggaatctgtcatttgttgttttgttattagtctacgtttaatacttcaaatatgtgttcgtatatccgatacgccaaaacttttcacctctagatctaaacacaacctaagtacaaactaaataatcaaccattcaaaaaaaaaactaaatgatcaaccagctttcttacagtattaattgcaggtgtgggtgtttgtgcttagcttaatcggcctcgttcctcttgctgagcgactcagcttcctcaccgagtaagctcccttaactaattcctaccatgctcagataatgtacatcatgcatgcatgcaaccatatactcttctgatcataagtcgttctgatttttttctaaattaatcttctttagttttaattaactttataataatatttttaacataaaacaagaaaaaatataaaatatattgaatgttagttttaataaaattaatttaatgctgtaaatattaatatatttttttataaacttgatcgaacttttagaaaagtcaaagtgacttataagtataaatgggggagagtaattataatagtgatcttgaattttgtgacaattaattggttgcgtgtatgcatgcaggcagattgcattttacaccggtcctactggtaagtgaattccatgcatgctagctattcgtttcgatcaggatcaagtggaaatgcatcaagtgaagtgcatgcatggttgcagtgggaggactactgaacgcgacatttgggaacgtgacggaggtgataatcgcgctgttggcgctgcgagaaggaaagattgaggtggtgaaatgctccctgctgggatccatcctctccaacctgctgcttgtcctcggcacctccctcttcctcgccggcatcgccaacctccgcgcccaccagccgtacgacaccaagcaagctcacgtcaacaccgccctcctcatgctcgccgtcctctgccactccctgccgctcatgctcaggtacgccgtcacctccggcgaccacgccatcgtctccggcgacgccgccctccacctgtcgcgtgcctgcagcatcctcatgctcatcgcctacctggcctacctcttcttccaactcaacacgcatcgccagctgtttgagccccaacaggtacgtcccgtctgtgattgatcgatgcatgtcctgtactacgttcgatcccaccaacaccaaatggtaattattatatttttctaattaggttgaggatgatgacgacgatgatttagtgatcgctcaagatgatgagccagtactgggattctcgagtgccatgatttggctggctctcatgactctcctgactgcgctcttgtcagggtatgttgtgagcacaattgaggtacagtatatatatatatcatcctagtaccatttacatatatgctgctgtactgtactgtattaatcttcagtgaattggcaagatgcatgcataatgaagctagctaaaccaccttttgtacgtatcttgtgaatgtacaggcggcctcagaatcatgggaactatcagtgagcttcattagcatcatcttgcttcccatcgttgggaacgcagcagagcatgccggtgccgtcatatttgctctcaagaacaagatggtactccatataattaagcagcacacacatacagtatatatatatatatatgcagcagagtattggtctttcttatcattaatttgttgtgacttgtgacgacaggatattactctcggagtgtctttgggctctgccacacagatctccatgtttgtggtatgtaggagtagctagtacgtagtactagtaatttactaacctcgctctatacattgatactctctccattccataatataagacacaaccacttttttttacatgttccataatgtaagacatacatacacatgcatgccattaactatgacaattctccattaaattactattttttttaaaatccttcactctcacattctctaactctattggatacatgcattacatttattaggatgatccaaactacaaggtgataataactatttcttggtctttgggttaagggtggttgtgtcttatattttggaatggagggaatagttattagtggagtatgtatgtagacatgcgtgttagtatgttgttgtgatggaagtgatgaactgtgcggcaggttccagtgagtgtgattgtagcctggactatgggaatcccaatggatcttgatttcaacctgctggagactggctctctgtttctagcaatattagtgacagccttcaccctccaggtaagtactagctagtaaaagctgaaattattggttcgatcttgttcagaatcaaagtgaaatacagtagtacagtaaaactcttaagattgtcggtattttattagaagtatatatatgtttcaggagggagaatcacattatctgaagggattgattcttgtcctgtgctacgctgtcatcagcgtgtgctttttcgttataagacggcgttctgcaggtatatgttatgttatgtactttctactacagtatgtaggaagcactactagacagtagagtagagtagtaatttggcatttgatagtgtggtcgatcgccggccgactgatcatatatatacgtgtgcgtgtgtgtgtgtgtgtaggagggacggacggtgttcaccatctggatgtgattgtgtagcaaattactaacaggcagaccgcagaagcagaaacgtacgtacatgcgcctaacatatatatggagtccgtacagtacgtgctagctacggagtactcctgtacactactgtactactgcttgcacaagagaagaggatcgagtaccgtagctagcacaggcggcggagacgagacgatctgcttgcttgaggaggcagccgatcgaagccggactgggcggagatcgatgcatggatccagtttgtttagactgacggacgatagaggatgataccacgacccaaccatccgtccctgcaattggctggtttggtcattcaaatagggaatcacaattgggttttaatgggttgctttagtttaggtcgttttggaatggtttgtttatatttatctttttcaaaggagtttgtttaggtttatcgaactactagaatatacatccatcttaagattattacattttaaaataaagatatatagtatg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0594200, RefSeq:Os05g0594200