Os05g0594900

From RiceWiki
Revision as of 10:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0594900| Description = Similar to U6 snRNA-associated Sm-like protein LSm8| Version = NM_001063045.1 GI:115465820 GeneID:4339810| Length = ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0594900

Description

Similar to U6 snRNA-associated Sm-like protein LSm8

Version

NM_001063045.1 GI:115465820 GeneID:4339810

Length

2027 bp

Definition

Oryza sativa Japonica Group Os05g0594900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:29704662..29706688

Sequence Coding Region

29704772..29704811,29704917..29704957,29705051..29705125,29706100..29706152,29706290..29706380

Expression

GEO Profiles:Os05g0594900

Genome Context

<gbrowseImage1> name=NC_008398:29704662..29706688 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:29704662..29706688 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtccgccggcccggggctcgaatcgctcgtcgaccagatcatatccgtcatcacaaacgatggccgcaacattgtggggacactcagaggattcgatcaagccaccaacatcatcctcgatgagtcccatgagagggtctattctaccagggagggagtgcaacagcttgttcttgggttgtacatcataaggggcgacaacatcagcgtggtgggggaggtggatgaagaactggatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaa</cdnaseq>

Protein Sequence

<aaseq>MASAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDES HERVYSTREGVQQLVLGLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH</aaseq>

Gene Sequence

<dnaseqindica>111..150#256..296#390..464#1439..1491#1629..1719#ctctttcttctctccaaaacacaaatcgtcgccgcatcccctcaactccggcgatccccttggcggcggcggcggcttccccaatcaccccactccacctgaactacaggatggcgtccgccggcccggggctcgaatcgctcgtcgaccgtgagttcatccctcttttttttttatctcatctcacccagctacccaagattctcctcctcctactattactagtgatagatgatgttttttttttctctccagagatcatatccgtcatcacaaacgatggccgcaacattgtggtgagccccttgtttgatctactcgtacaccttttttgttttttttggctctcgctaatactcactcgaattgccctgcctccgcttcgtcaggggacactcagaggattcgatcaagccaccaacatcatcctcgatgagtcccatgagagggtctattctaccagggtagggttgctcccaactctttctacgcttctttcatgctatcttgcaaaccttcaattaattttacagcaatatcaatatttcactaagctagtactatatgccctgataatccggcaacacacactttacttccatcttcataaagttatgtttacaaggcggtcatacttacagttagttactctgctaaatttttctgcgtttagaatctctaccacagtctgtttggcattttccatagagttgcctgtttgctaaggctacaagttcagccacacaatttttttttgttattccagtatgtccttgttaattgtgaccttctccctggtttgctgtcaaatgctctcattggttcactagtgcagaattctgcaatcagcaataagtttctctcatggtgcttgaaagttagttgccaacatgtattacacagtaccctttatggctaaacacagattgttttcaaagatggctctctttcatgatggttataaatgtcatcatgaagtaatgagttcatattgttgactgttcgtatctatcatcatgtctactgtcagtatgaactgaagttcgtttcctgcaaaataatgagtttatactgtaacatgttttagctgaatttgtcataacagcacctttttcttcaaggattggttcgattaattctaccttgtgcacgttcaatttttcagaagtcatattattttttgtcttcaatagttaggtattggaatgtctttgttctttatggtgcagagttgttgttctaacaatttgcaggcaatgttgactatgaatagttatatgtctcgtatcatgcacctctctattgaatatgggatatgccttcttaaggactaggggccaatgcctttaaattgtcatgcttttagtttgtggcatgtgctgttagtagtacagttgaaattttgagtagtgatgagagaaatgtgttgtacctgcaggagggagtgcaacagcttgttcttgggttgtacatcataaggggcgacaacatgtaagctatttcctcaattgtcgtttgagctgtttattgcttattaattacctgcatggaggtcgtttatggatgtgttattttgtttggtggtgtgcctaactgaagttgaatccgtgggtgatgcatatttacagcagcgtggtgggggaggtggatgaagaactggatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaatggaaacgaatgaatgatgtactactactagtagtaagctaaacctaaatgtagtgttgtcccagaagttgtgaagaagtgggtgctagtgttgccgatgagtgaacttctttaacgtacgcgaggaagtccagcaagcggatgagcgagcatgaagaagaatgttatggttttatgtggtggtggatgggtgatgcatgtttgttgaacacgaacacagacacagtgactcagtgagtgaagatttggtttccattgtattgtattgtttgtgcagctgtatcaatgtacatgaatgaggaaggcag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0594900, RefSeq:Os05g0594900