Os04g0103200

From RiceWiki
Revision as of 10:55, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0103200| Description = Proteasome component region PCI domain containing protein| Version = NM_001058533.1 GI:115456795 GeneID:4334895| Len...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0103200

Description

Proteasome component region PCI domain containing protein

Version

NM_001058533.1 GI:115456795 GeneID:4334895

Length

3051 bp

Definition

Oryza sativa Japonica Group Os04g0103200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:210344..213394

Sequence Coding Region

210706..210795,210975..211044,211174..211271,211354..211463,211569..211719
,212283..212427,212519..212731,212855..212993,213072..213306

Expression

GEO Profiles:Os04g0103200

Genome Context

<gbrowseImage1> name=NC_008397:210344..213394 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:210344..213394 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacgatcgtgaacacgacggaggaggagccgatgctggccgtggtgcgcttcaccgccgagctggcctgggcggacgccggcgccgacgtcgccgagccggaggtcacccgtctctgcgtcgaggcgcagcagcacatcctcgccgcccgctggctcgacatggcctccctcatgctcgcctccgccgacctcctcctccaatccacgcgcctccccgacaaggacaaagatctcgagtgcatcctcgctatcatctgcaacctcgtcaccaaggcccgatcccaagacgaggccctgcagatcgccgaactcatctgcgccaagctcacccaccagccccaagacaaaccggccctgcgcctcaaagttctcttcagcttgtacaatctgctcgggagcccctatgccaaggccttcgtctacaagaaggcactcgacctcgccgccgctgggaaggctgccgactgcattatccctacttttaagaacatcgacagcttcatcagcgattggggcattggcaaggtggagcagagggacctgttcctcgctgccgctaggatcctcaaggaccagaaaggcatgaacaaggagtacttcaactttctgaataagtaccttgccaccttcgatggatcggccgatgacgctgatgcaatcggtgatgcaaaggaagaagctgttgcagcaatcattgagtttgtcaagtcatctgatctctatcagtgtgatctactcaatatgccagcagttgcacagctggaaaaagacgaaaagtatcagctggtttatgagctcttgaagatattccttactcagaggcttgattcctatttagagtttcagtcagctaattctgccttgctgaaaggttatggactggttcatgaggattgcataacaaaaatgagactgatgtccctgcttgacctcagcagccgttgtgctggggagatcccttaccatgcaatcatagatgcacttaagatcaatgatgatgaagtggagtattggattgtgaaagctatttcatgcaagatattggattgcaaagttgaccagcttaaccaggttatcattgtcagtcggcatactgagaggatatttgggatgccacagtggcagagtttacgttcaaagcttggagtttggaggggaaacattgctagtgctattaacacaatacaagcaaacaaggtgactgatgatggatcacaggggatccaaggcttgatgatccgttga</cdnaseq>

Protein Sequence

<aaseq>MATIVNTTEEEPMLAVVRFTAELAWADAGADVAEPEVTRLCVEA QQHILAARWLDMASLMLASADLLLQSTRLPDKDKDLECILAIICNLVTKARSQDEALQ IAELICAKLTHQPQDKPALRLKVLFSLYNLLGSPYAKAFVYKKALDLAAAGKAADCII PTFKNIDSFISDWGIGKVEQRDLFLAAARILKDQKGMNKEYFNFLNKYLATFDGSADD ADAIGDAKEEAVAAIIEFVKSSDLYQCDLLNMPAVAQLEKDEKYQLVYELLKIFLTQR LDSYLEFQSANSALLKGYGLVHEDCITKMRLMSLLDLSSRCAGEIPYHAIIDALKIND DEVEYWIVKAISCKILDCKVDQLNQVIIVSRHTERIFGMPQWQSLRSKLGVWRGNIAS AINTIQANKVTDDGSQGIQGLMIR</aaseq>

Gene Sequence

<dnaseqindica>2600..2689#2351..2420#2124..2221#1932..2041#1676..1826#968..1112#664..876#402..540#89..323#agggttttcttcctcttctcttgcatcctcccatctcctctccggcggcggcggcgtcttgtgcgcgtgagaaagagaggagaagaagatggcgacgatcgtgaacacgacggaggaggagccgatgctggccgtggtgcgcttcaccgccgagctggcctgggcggacgccggcgccgacgtcgccgagccggaggtcacccgtctctgcgtcgaggcgcagcagcacatcctcgccgcccgctggctcgacatggcctccctcatgctcgcctccgccgacctcctcctccaatccacgcgcctccccgacaaggacaaaggttcttcccttccctctctctctcccctattgaatttgagaggctcatgttgctgctgctcatcctttccaattctagatctcgagtgcatcctcgctatcatctgcaacctcgtcaccaaggcccgatcccaagacgaggccctgcagatcgccgaactcatctgcgccaagctcacccaccagccccaagacaaaccggccctgcgcctcaaagtgtaagcctcacactctctctttttttttaaaaaaataaataaataatatatatatacattattttctagtattggatttgtcacaatgctttgcttccattgtatgcgccccacacaaggcagtctcttcagcttgtacaatctgctcgggagcccctatgccaaggccttcgtctacaagaaggcactcgacctcgccgccgctgggaaggctgccgactgcattatccctacttttaagaacatcgacagcttcatcagcgattggggcattggcaaggtggagcagagggacctgttcctcgctgccgctaggatcctcaaggaccagaaagggtgcgccttgcattgctttcttccattactttcctgacattgcagcattttgtattgaggtgatctcatgccctttcttgattgacaacagcatgaacaaggagtacttcaactttctgaataagtaccttgccaccttcgatggatcggccgatgacgctgatgcaatcggtgatgcaaaggaagaagctgttgcagcaatcattgagtttgtcaagtcatctgatctctatcaggtaattctttacttgagagttcacatctctgttgccaagtctaggatttgtttaggcgtaacgacacaatttgctccctgttggatggacattattaaaatgaacaaaggattaagatgagccccactgtgtccatatcagaacttcaatgtattatggcgattctcacatcagatcaacagatgtcgaattgggtcatatagtgttgaattcggctgttaaactgccaatacgacttttttcattttgtgaacaaggacaagttattcgctaacatttgaaacctagtatgtacttgtgctctcatctcttagtatgtctactaccctgaaactgatttaggaagttatcatatattcatgtttataaacttgttctttacttgccattttaccaactattgccagtaatccagttgcaaccaacaatgggttattgggtatggacatgtctcttgtatgttacagtccctggtctttatcaatttcaatcttgacaagctatatgtatagtttaagggcacacttcaatgcagtggatcatgcaattatgtgtcattgcagtgtgatctactcaatatgccagcagttgcacagctggaaaaagacgaaaagtatcagctggtttatgagctcttgaagatattccttactcagaggcttgattcctatttagagtttcagtcagctaattctgccttgctgaaaggttatggtatgtacaactgctgaattgaaaacattaaatgtctttacttggagcaaatatggaaaatgtgatgcttcgtttacaggatttctaatgataaacaattggcaggactggttcatgaggattgcataacaaaaatgagactgatgtccctgcttgacctcagcagccgttgtgctggggagatcccttaccatgcaatcatagatgcacttaaggtgaattagctgttcaatcctgccattgtgttactgttcacctgtcgaagaatttatattgaccatgtaaaacatttattagatcaatgatgatgaagtggagtattggattgtgaaagctatttcatgcaagatattggattgcaaagttgaccagcttaaccaggttatcattgtcaggtattcgcatctgtaggaccttttgacttacctttattttggttttgctttaacatttgtggtccatattaaggtgctatatatgtatatattctttggttaatgagtgatctggtatgtaattttcagtcggcatactgagaggatatttgggatgccacagtggcagagtttacgttcaaagcttggagtttggagggtaagccacttgacgatatctcacctttaatttgtcattttgattagctcaactgcatagtttagttaaaaaaaatctcttcttttttggttctgtatgttggttgcatatcactgggctgaagtctttaagcatttagcatggatttgattcagttgtctatgaaaattctgctgcagggaaacattgctagtgctattaacacaatacaagcaaacaaggtgactgatgatggatcacaggggatccaaggcttgatgatccgttgatggagaggggttcctgaattgaaattatagtttcaactttgagtagatgagcaatccttttgtatgagattacttgtaatgtgaattactttgatcccatgaccttgtggctggatctggattgctatggcatgctaagcaatctcattgtttttgtagtcatagcggtgcttaaaagtcggttgttacacaagtaccaatcagtcgattactaaagagttccaacagaatggcagatctattgtggcaattttccttcataacggattgatgagttaatgtattattgtttagaacatctggtgcgatttttcataacaattatgacagtcatagaacgtcttgttcaagaatactgaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0103200, RefSeq:Os04g0103200