Os04g0109500

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Revision as of 10:56, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0109500| Description = Legume lectin, beta domain containing protein| Version = NM_001058559.1 GI:115456847 GeneID:4334923| Length = 1337 b...")
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Gene Name

Os04g0109500

Description

Legume lectin, beta domain containing protein

Version

NM_001058559.1 GI:115456847 GeneID:4334923

Length

1337 bp

Definition

Oryza sativa Japonica Group Os04g0109500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:559425..560761

Sequence Coding Region

559706..560686

Expression

GEO Profiles:Os04g0109500

Genome Context

<gbrowseImage1> name=NC_008397:559425..560761 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:559425..560761 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcttcttcttgtcctgctgctcgccgtcacctgctctccggcgatggccgacgtcgtctcctacagtttcgccgccgtcggaggcggcagggcggcgtcgaacggccttgtggtggccaccaactcgtccatcctgtctcccgccacgttcctcttcgacgcccagctgttccccgtcttcaacgagtccgacggcttcctcctcctcgccgacacgctccagctctggcgcgccgccgccgccgggatgccgccggccctcgacgcgtcattcaacacgaccttcaccttcctctcctccgccgtcgccttcgtcgtcctcctcgacagcttcccgccgctggcgagccaccgcggcgtttcggcaccgaccgacggcggcgccatgacgacgaccaaccccaacgccaccagcagcctcgccaccgtcgaggtcggcacggtgaactcgtacggccggcgatcccccaacgtcggcctcaacgtcaccgtgtccgcgaaccgcacggcggcgccgcatggcctcaccgtgtggatcgagtacagcgccgtcgagcaccacctgtgggtgtacgtcgccgccgccggcgaggcaaggccggccaaatccgtcatcgacctgccgctcaacctccccggccggcggatcacacagagagcgttcgtcggcttcttcgccggcacggtcagggacgccgtcctcggcatccgtgactggaacctcacggtggacaggttcccgggcgacgggcggcggcgaggagaagacgttgatgaacaggtgaagaagggcacgccgccgtcgcggtggctggtggcgctgctcgccgtgctcggcgccgttgcggcggtggtgaccgtggcgtcggtggtggtgtgctacatggtgtcacggagacgggcgctggagacggagcgaattaggcaatacaccaagtactattttccggcaggagggaggcccggaagcaactga</cdnaseq>

Protein Sequence

<aaseq>MELLLVLLLAVTCSPAMADVVSYSFAAVGGGRAASNGLVVATNS SILSPATFLFDAQLFPVFNESDGFLLLADTLQLWRAAAAGMPPALDASFNTTFTFLSS AVAFVVLLDSFPPLASHRGVSAPTDGGAMTTTNPNATSSLATVEVGTVNSYGRRSPNV GLNVTVSANRTAAPHGLTVWIEYSAVEHHLWVYVAAAGEARPAKSVIDLPLNLPGRRI TQRAFVGFFAGTVRDAVLGIRDWNLTVDRFPGDGRRRGEDVDEQVKKGTPPSRWLVAL LAVLGAVAAVVTVASVVVCYMVSRRRALETERIRQYTKYYFPAGGRPGSN</aaseq>

Gene Sequence

<dnaseqindica>76..1056#atgcaaccatcaaaattggaaaaaaaaaattcagttcaccggccgactagctagctactacagtagtggctatacatggagcttcttcttgtcctgctgctcgccgtcacctgctctccggcgatggccgacgtcgtctcctacagtttcgccgccgtcggaggcggcagggcggcgtcgaacggccttgtggtggccaccaactcgtccatcctgtctcccgccacgttcctcttcgacgcccagctgttccccgtcttcaacgagtccgacggcttcctcctcctcgccgacacgctccagctctggcgcgccgccgccgccgggatgccgccggccctcgacgcgtcattcaacacgaccttcaccttcctctcctccgccgtcgccttcgtcgtcctcctcgacagcttcccgccgctggcgagccaccgcggcgtttcggcaccgaccgacggcggcgccatgacgacgaccaaccccaacgccaccagcagcctcgccaccgtcgaggtcggcacggtgaactcgtacggccggcgatcccccaacgtcggcctcaacgtcaccgtgtccgcgaaccgcacggcggcgccgcatggcctcaccgtgtggatcgagtacagcgccgtcgagcaccacctgtgggtgtacgtcgccgccgccggcgaggcaaggccggccaaatccgtcatcgacctgccgctcaacctccccggccggcggatcacacagagagcgttcgtcggcttcttcgccggcacggtcagggacgccgtcctcggcatccgtgactggaacctcacggtggacaggttcccgggcgacgggcggcggcgaggagaagacgttgatgaacaggtgaagaagggcacgccgccgtcgcggtggctggtggcgctgctcgccgtgctcggcgccgttgcggcggtggtgaccgtggcgtcggtggtggtgtgctacatggtgtcacggagacgggcgctggagacggagcgaattaggcaatacaccaagtactattttccggcaggagggaggcccggaagcaactgaatgtgaataaaatgaaattatcgtacgtaggagtattaatttatattacaagtcgctttgatacttctttttcttgtcaaatatttctaagtttgctcaagtttataaaaaattacactaactttttaacacaaaacaaatatattatcaaaatatattaaatattagttttaataaaaataatttggtgttgtagatgttactattttttctatatataaacttagttaaacctaaaatagtttaactaggaaaaaaatcaaaccttatactccctccgt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0109500, RefSeq:Os04g0109500