Os09g0248300

From RiceWiki
Revision as of 07:18, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0248300| Description = Frigida-like family protein| Version = NM_001069203.1 GI:115478145 GeneID:4346501| Length = 5440 bp| Definition = O...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0248300

Description

Frigida-like family protein

Version

NM_001069203.1 GI:115478145 GeneID:4346501

Length

5440 bp

Definition

Oryza sativa Japonica Group Os09g0248300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:4235759..4241198

Sequence Coding Region

4235998..4236414,4237825..4237994,4239591..4240632

Expression

GEO Profiles:Os09g0248300

Genome Context

<gbrowseImage1> name=NC_008402:4235759..4241198 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:4235759..4241198 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccgacatggagtccatgacagcccttatggagtctacaggctccaagctgcagctgcttcagcgtgcatttgccgagcttgagagccagagtgctgtttcattgaacttaaagtggaagcaacttgaggaccatttccatggccttgagcagtcgcttaagaaaaagtttgatgagctgaaagagcaggaaaaggagttcaaggagacagtcacgaaatcggagcagatgcttgagcaacaagaggctgctgtcgtggcaaaggaactgacttctcttgaaagactgcagcagaaaagggatgctgcgttggctatgatcttcggcaagtcaaagctgaacttgtctatgcctgtaatcaacccaatcagcaaatctgtgagtaacaatgctgtgttaaatggcaacatcgctagcctgtggcccaaacctgcaactgcgcatggtgcatacctgcaagatggaaacactgctgtgaagcctcgttctcaacttgttatcctctgtgaagaaatgaatgttaacgggcttcataagttcatatcagacaatcgcaaagacttaacatccatccgtgaggaaattcccgttgcacttaggggagcaactgatccatatggcttggtgttagcttctctagaagacttctattttggagacaatcttatattggatggtaaaaaggatggaaaccttctgggtgtacggaggacgtgcctcatgttgatggaatcacttgctcagctgcaaactgatgctactactggtttcatatcaaaaggccaaatgcttactgctagtattaaggagagagcgaaaaagatagcgcttgagtggaaatccaagttggatagccttgactttgatgctagcaatgggaactgcctggaagcacatgcgtttcttcaactcctggctacctttgctatattttctgaatttgcggaagacgagctgtgtaagcttctcccatcagtcagtcgtcgtcgccagacacctgagctttgtagaatacttgggttgtcacagaacatgccaggtgtcattggagttttgattgaaaatgggagaactattgatgcaattaatttggcttatgcatttgagctgactgatcagtttgaaccagtcgaattactgaaagcttatctgaaggaggtcaagagtatgtcacatgtcaagaccggaaagatgtctccgggagtacagaatgaaattaatgaacgcgagttgtctgccttgaaagctgttatcaaatgtattgaggagcacaaacttgatgagaaatatcctatcgacccacttcagagaagagtcatccagctagagaaagccaaggcagacaagaggagggctgttgaagctggaaagccacagtctaagaggcctcgtgccaacggatcagtatatgcgccacatattactagcttttctgacaaaagcttctaccaggccgctgcgccacagaggcattcctacccttacgagaggcagtatgtatatggtgctgaggcccatcatcacccaacaatgataagctcagctccctatggcatgtcacctgcccacacaacatactatggtaatggctatcaggttcagtaccaggtaccatatatccactga</cdnaseq>

Protein Sequence

<aaseq>MSDMESMTALMESTGSKLQLLQRAFAELESQSAVSLNLKWKQLE DHFHGLEQSLKKKFDELKEQEKEFKETVTKSEQMLEQQEAAVVAKELTSLERLQQKRD AALAMIFGKSKLNLSMPVINPISKSVSNNAVLNGNIASLWPKPATAHGAYLQDGNTAV KPRSQLVILCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFY FGDNLILDGKKDGNLLGVRRTCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKI ALEWKSKLDSLDFDASNGNCLEAHAFLQLLATFAIFSEFAEDELCKLLPSVSRRRQTP ELCRILGLSQNMPGVIGVLIENGRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMS HVKTGKMSPGVQNEINERELSALKAVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADK RRAVEAGKPQSKRPRANGSVYAPHITSFSDKSFYQAAAPQRHSYPYERQYVYGAEAHH HPTMISSAPYGMSPAHTTYYGNGYQVQYQVPYIH</aaseq>

Gene Sequence

<dnaseqindica>4785..5201#3205..3374#567..1608#gtgtcctcgcctgagggtgtccccatcccatcccgtcggctgggcgtggaggtggagtcccgtgtcgcgagttcggccgccgctgccctgcgccgatctccatccccgtcggttgtcctgctgcttccgccgcatcctggtgagtatccatcctctttctcgttcatctctacccacccacttttttccttgaatttccctgcgttaattctagcttctcttccagatctggaagcttcttttctctcaattttgatcaccttacaaataacagtttgtttgttcccccaaaaaaatttacatcacagtataccatgtcccacgttagatccgtccatgggtagatgatgttgctatgttctccgatttgtgtgcaatagcgtataaaattcccttcaatgttccttcatccatgcgcaggaagaaattaaccgaaccattttagtgagatattgcgtagtttcgatgaagtttttgctgtactgtgcggggatttgtttgcagtgctatttgggttgcgcgaaccaacagcttccgttgtttactcatttgcaggagctgccgccatgtccgacatggagtccatgacagcccttatggagtctacaggctccaagctgcagctgcttcagcgtgcatttgccgagcttgagagccagagtgctgtttcattgaacttaaagtggaagcaacttgaggaccatttccatggccttgagcagtcgcttaagaaaaagtttgatgagctgaaagagcaggaaaaggagttcaaggagacagtcacgaaatcggagcagatgcttgagcaacaagaggctgctgtcgtggcaaaggaactgacttctcttgaaagactgcagcagaaaagggatgctgcgttggctatgatcttcggcaagtcaaagctgaacttgtctatgcctgtaatcaacccaatcagcaaatctgtgagtaacaatgctgtgttaaatggcaacatcgctagcctgtggcccaaacctgcaactgcgcatggtgcatacctgcaagatggaaacactgctgtgaagcctcgttctcaacttgttatcctctgtgaagaaatgaatgttaacgggcttcataagttcatatcagacaatcgcaaagacttaacatccatccgtgaggaaattcccgttgcacttaggggagcaactgatccatatggcttggtgttagcttctctagaagacttctattttggagacaatcttatattggatggtaaaaaggatggaaaccttctgggtgtacggaggacgtgcctcatgttgatggaatcacttgctcagctgcaaactgatgctactactggtttcatatcaaaaggccaaatgcttactgctagtattaaggagagagcgaaaaagatagcgcttgagtggaaatccaagttggatagccttgactttgatgctagcaatgggaactgcctggaagcacatgcgtttcttcaactcctggctacctttgctatattttctgaatttgcggaagacgagctgtgtaagcttctcccatcagtcagtcgtcgtcgccagacacctgagctttgtagaatacttgggttgtcacagaacatgccaggtcagtgctatcatggattaatcatgcacctagttccgttatgtattgaccataggggttttctatttgtcattgtcactcagattgctagagagcttattcttaccacttcaacatttgttcatatatgaatagactatatcattggatttattttctagttagtggctgcagcgagaatatacctagaagtaatcaatattgcgacattgctgtttagatgatttatatggaaaatctgaaggctgctacttatgttttagtggctgcacatcttaaacccactatctagtatctgtattgttcttactggcaacaaaattcgagcagcttctaacgctgcgttcgaattatggactttcctctcacgcacgaaaaacgagggtggtttattagcgcataattaattaagtattagctaaaaatgaaaattagattaatatgatttttaaagcaatcttcctatatattttttttgaaaaaaaaaacataaagtttagcagtttgaaaagcatgcgtgcggaaacgaggtagtataagttgggaagggggaagaaagaacaccctaaggctgtgtttgatacttggggttgggaacccaactccaccgcacggaaaacggagcggtccattagcgtgtgattaattaagtattagttaatttttttttcaaaaatggattaatttgtttttttaaagcaactttcgtatagaaactttttgcaaaaaaacacaccatttagcagtttgaaaagcgtgcacgcggaaaacgagggaaaggggttgggaaacttgtggaaagaacgcagcctaagcatgctagtgcatggtctaaccagctcaattcaggactcaggagatcttaatgtcacaggatgttagttactaacttccgaataatatatgtaattgcatatagtatatattggattatagcaagctaatacgactttattcaatccctttttggttgaatttgtcctcccgtttgattatttactgggatgtgctgttgtgcatctcttttagaaaaaaaaatacacatatatgagtattatggttaatgttatgtagtggcaaaatgcattagaccttaaaagatgaatcaatcaagagttggcaccgacatggttttgaaatatataaccgtggaattgaacgattcaacttttatgctggcgctgatttacacatctatcaatttgcctaagattttaaactttctcaaagagttgtacagaagcaaggccctagttcgtgatatgttgttacagcttgtatagctccagcaattaagcaatctaaaattattataatcacatacatgaatgatgatttttgtatggtttgaacaagcatattgcttattgtttagctgctgctgtatctgcttttgttttgacagtttcaacagtcattgcaactgaacattattttttgtgcaatatttgtttgcctcaccctttgctccattcttttaattttgtctttcgtcttttgtgccttttcccctcttgcatgctcttttcgtttttacaagtcagcaacatttgttcatgacaattaagtcctcatgttcatgtttctggacatcaggtgtcattggagttttgattgaaaatgggagaactattgatgcaattaatttggcttatgcatttgagctgactgatcagtttgaaccagtcgaattactgaaagcttatctgaaggaggtcaagagtatgtcacatgtcaagaccggaaagatgtctccgggagtacaggtacacttttttcatttcaattttcagagttcaagatccaagtcgggagctgagtaaccctggtctactttggtttaacaaaaagtgcattatttaatttggatccaaaaattatcattcagaatttcgaaacttgaaattctgtaaaaacttagtattaaatcattgtaagtctctccttgaaaattgaagttgaagcgtcttaaagacaagattacttgtagcttgtagcaattctgttcgatagatcagttggcatgccacttatttagtattcgttgccaagcatataatatccattaatacaataaaagaagatttttgtgcaaatcattataatattgcactggagcaataaattcgttcactatattctagtgttttcatgctcatttttcctgtagcaccatgacatcctgccatgatgatccatgaaatgctccttatgctgcatacctcaaaatggcagccaaaattaggataaggagattgtgccataacttcctgttcctgggattgactagtttggatgggattttgcctagatccagggaaaggaatcttgcgtattactaattaaatttgtaccaattctcttaaggagatctgaactacatgaaagttcattttcttcagctctgcattcctttcccaccataaccaaggtttatccagattttttttaacagggaagctaatcgttagattatgttttaatagtttgctcagtgtacttcttaatttccttattctggaatactacctccgtcccagaatataagaatttttagggttgaacacggttattaagaaagtaggtagaattaaatgggagaaagttgtgattggatgagaagtggaggttggtgaggaagttgaatggtggatggttgtgatttgttgggaaaaaaatattggtagataagttgttattttttgggacggagggagtaaagttagcaaattatttagacgccaatcagcttcagtatagaagcttgaatgtcattctgaagaacttgaataataataatatctcgacccttaggggagagacatcctgaaggcatctcatttgaggtcgagaaaaggccctgaaagctggctaacccatatggggactttttgttgtcttgacccgtgctttaggggaacatgcagagggcctttttttggagccctggttggtagcctcacaactggaggacttaccatgttttcaagaacttgaacaataaagagctatcttatcttgcaagatattaagctagttgcctgctaattttactttctcgagtggcgtaattaatattctctcttcttgctggtatgtgcattcttgagcatatctgcatgcattcctaattgttatgttttgtattacatctgatgaattatcatataatgcagaatgaaattaatgaacgcgagttgtctgccttgaaagctgttatcaaatgtattgaggagcacaaacttgatgagaaatatcctatcgacccacttcagagaagagtcatccagctagagaaagccaaggcagacaagaggagggctgttgaagctggaaagccacagtctaagaggcctcgtgccaacggatcagtatatgcgccacatattactagcttttctgacaaaagcttctaccaggccgctgcgccacagaggcattcctacccttacgagaggcagtatgtatatggtgctgaggcccatcatcacccaacaatgataagctcagctccctatggcatgtcacctgcccacacaacatactatggtaatggctatcaggttcagtaccaggtaccatatatccactgatggagagagcgccgtgtcctctttcttaactatgtagcttttaacctgctactatgtgttgtagttgtatcaatccactagctagactgcctagctgaaattagttcgaccactcctgtgtgtgctgagtggccagtgtgaaaatctgttaatttccctgacgacttatgacataatttactcctaatgtttagttaaataatttgcttttgtttaatataaggagttgagatagtccc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0248300, RefSeq:Os09g0248300