Os04g0183500

From RiceWiki
Revision as of 10:59, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0183500| Description = Amidase family protein| Version = NM_001058722.2 GI:297602181 GeneID:4335106| Length = 2710 bp| Definition = Oryza ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0183500

Description

Amidase family protein

Version

NM_001058722.2 GI:297602181 GeneID:4335106

Length

2710 bp

Definition

Oryza sativa Japonica Group Os04g0183500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:5678864..5681573

Sequence Coding Region

5678864..5679358,5679424..5679662,5679803..5680045,5680697..5680898,5681217..5681573

Expression

GEO Profiles:Os04g0183500

Genome Context

<gbrowseImage1> name=NC_008397:5678864..5681573 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:5678864..5681573 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctctcgccgccgccgccgccgccgccttctgctgctgctgctccgccgccactggcttcgagttcaacgaggccaccgtcgacgccatccagctcggcttcagcaacggcagcctcacctccacgacgctcgtccgcttctacctcgaccgcatcgcccgcctcaacccgctgctgcacgccgtcatcgaggtcaaccccgacgcgctcgcccaggcggcgcgcgccgacgctgagcgcgccaccggtcgccgctgcgggccgatgcacggcgtgcccgtcctgctcaaggacaacatggcgacgcgcgaccggctcaacacgacggccgggtcgctggcgctgctcggctccatcgtgcgccgcgacgccggcgtggcggcccgcctccgcgccgccggcgccgtcatcctcggcaaggccagcctctccgagtggtccaacttccgccctgtcaaatccggctggagcgcccgcggcggccagacggtggtgtttgtgaaattgcccatggagaatccctacgtgctctcggctgacccgtgcgggtcgagcagcggtccggcggtggcggcggcggcgaacatggcggcggtgacgctgggaacggagaccgacgggtcgatactttgcccggcgtcgctgaattcggtggtcggaattaagccgacggttgggctcaccagccgggctggtgtcatccccatctcccccagacaagacactgttgggccaatatgtcgtacggtgtcggacgctgcccatgtgttggatgtcattgttgggttcgatgagcttgatgctgaagcgactggagcagcatccaaatacatccctagtggtggatatggacgattcttaaggatggatggattgaaaggcaagaggattggcatccccaatggctttttcactgaaggagcctatgggaagacacaactgagggtgtaccaaaaacatctttccactatgaggaaacacggagccctggtgatagagaatatcaacatcacaacaaatttgtctgccgcgcaggatgttctttattccaacgagaatatcgcattgcaagcagagttcaagttaagcctaaacgcttatttgtcagacttgctgtattccccagttcattccctcgccgatgtggtagcattcaataatgcacatcctgtggaggagagacttcaagattttggccagcccgacctgattgcagctcaaaaaaccaatggcattggtccagtggaaaaagcggcaatccagcgtctcaacgagctgtcagctgatggattggagaatctgatgaggatgcaccagctagatgcgattgtcacccccaactctcatgcatctagcttttttgccatcggcggcatgcccgcgatcaccgtgccggctgggtacgatggtcatggagtaccatttggtatctgcttcggtgggttgaagggctatgaaccgaggctgattgaaatggcttatgcttttgagcaagctaccaaagttcgaaggatgcccagcttcaagccatag</cdnaseq>

Protein Sequence

<aaseq>MALAAAAAAAFCCCCSAATGFEFNEATVDAIQLGFSNGSLTSTT LVRFYLDRIARLNPLLHAVIEVNPDALAQAARADAERATGRRCGPMHGVPVLLKDNMA TRDRLNTTAGSLALLGSIVRRDAGVAARLRAAGAVILGKASLSEWSNFRPVKSGWSAR GGQTVVFVKLPMENPYVLSADPCGSSSGPAVAAAANMAAVTLGTETDGSILCPASLNS VVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAAHVLDVIVGFDELDAEATGAAS KYIPSGGYGRFLRMDGLKGKRIGIPNGFFTEGAYGKTQLRVYQKHLSTMRKHGALVIE NINITTNLSAAQDVLYSNENIALQAEFKLSLNAYLSDLLYSPVHSLADVVAFNNAHPV EERLQDFGQPDLIAAQKTNGIGPVEKAAIQRLNELSADGLENLMRMHQLDAIVTPNSH ASSFFAIGGMPAITVPAGYDGHGVPFGICFGGLKGYEPRLIEMAYAFEQATKVRRMPS FKP</aaseq>

Gene Sequence

<dnaseqindica>1..495#561..799#940..1182#1834..2035#2354..2710#atggctctcgccgccgccgccgccgccgccttctgctgctgctgctccgccgccactggcttcgagttcaacgaggccaccgtcgacgccatccagctcggcttcagcaacggcagcctcacctccacgacgctcgtccgcttctacctcgaccgcatcgcccgcctcaacccgctgctgcacgccgtcatcgaggtcaaccccgacgcgctcgcccaggcggcgcgcgccgacgctgagcgcgccaccggtcgccgctgcgggccgatgcacggcgtgcccgtcctgctcaaggacaacatggcgacgcgcgaccggctcaacacgacggccgggtcgctggcgctgctcggctccatcgtgcgccgcgacgccggcgtggcggcccgcctccgcgccgccggcgccgtcatcctcggcaaggccagcctctccgagtggtccaacttccgccctgtcaaatccggctggagcgcccgcggcggccagacggtggtaaccaccactgccaccacacatgctctgcttctcttctctgtttggtcgtgtatgctcacaaggtgtttgtgaaattgcccatggagaatccctacgtgctctcggctgacccgtgcgggtcgagcagcggtccggcggtggcggcggcggcgaacatggcggcggtgacgctgggaacggagaccgacgggtcgatactttgcccggcgtcgctgaattcggtggtcggaattaagccgacggttgggctcaccagccgggctggtgtcatccccatctcccccagacaagacactgttgggtaagtaacaattttatgatgagcatgtgatttccactgttttcgtaaaaaaatgttccatttcttttgattaattatctctgaatgtttatgatactgttttgaacatatttatttttgttaatttaaacaaaatgcaggccaatatgtcgtacggtgtcggacgctgcccatgtgttggatgtcattgttgggttcgatgagcttgatgctgaagcgactggagcagcatccaaatacatccctagtggtggatatggacgattcttaaggatggatggattgaaaggcaagaggattggcatccccaatggctttttcactgaaggagcctatgggaagacacaactgagggtgtaccaaaaacatctttccactatgaggtatttgaaattataaagccctcctgaaaaattatgcgtataaaaaagtatgaagataataatgattagaacaaaatttttttttgtaaatactgttatttttctgttgtgttcgaatgtataattggaatagtccatatatactgttttacatatagaatgaaaatagatcactgactactaggcatgagcacgttggcccatgcctcaaccaccttttggatgcacaaaggccagtttccttttctttttttttctcatttcctcagtaaaattcttaatttgtttcatatgaataaaatttatcttataagtagccagtccggtttattttatccatccatgattgaaaagaaactccttgtcttaagataatccattcatctccccatagaaattcagtggtgaacaaataattttagttacaaaaactgtagactgatttattgtgttcaaaatatttgtaaaagaaactaatcaagcattgaaccattaaaatgatagctaaaatctattcttttaagtatagatcaacaaaatatttcacgtatatgttgtggaataataatatattagaactcgcaatgaaagactccatctagtatatagtaaattatgtcatcatttaataactcctattctccaataaaggaaacacggagccctggtgatagagaatatcaacatcacaacaaatttgtctgccgcgcaggatgttctttattccaacgagaatatcgcattgcaagcagagttcaagttaagcctaaacgcttatttgtcagacttgctgtattccccagttcattccctcgccgatgtggtagcattcaataatgcacatcctgtggaggtaagtattaaagctagttgaattaattaatcattcatcacgagttctaatgccttcaaaattataaaactagctagttgcaaggaatgtcaaataatttatccttcaacgttcgaaagttatacaataatagtgtaggtttaggttattggcaaagaagagaataccaggttaccgattaacaagaatagcgaatttactttatgcacagtgcacggtcgagtgcaaaaattaaaccagcacttgtattttctaaaaagtattgaatacctttcatatgaaaaacaagaagccatgaaaaaataatctttgctgcaggagagacttcaagattttggccagcccgacctgattgcagctcaaaaaaccaatggcattggtccagtggaaaaagcggcaatccagcgtctcaacgagctgtcagctgatggattggagaatctgatgaggatgcaccagctagatgcgattgtcacccccaactctcatgcatctagcttttttgccatcggcggcatgcccgcgatcaccgtgccggctgggtacgatggtcatggagtaccatttggtatctgcttcggtgggttgaagggctatgaaccgaggctgattgaaatggcttatgcttttgagcaagctaccaaagttcgaaggatgcccagcttcaagccatag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0183500, RefSeq:Os04g0183500