Os04g0195000

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Revision as of 10:59, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0195000| Description = Similar to Vacuolar assembly protein VPS41 homolog| Version = NM_001058748.1 GI:115457225 GeneID:4335134| Length = 7...")
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Gene Name

Os04g0195000

Description

Similar to Vacuolar assembly protein VPS41 homolog

Version

NM_001058748.1 GI:115457225 GeneID:4335134

Length

7264 bp

Definition

Oryza sativa Japonica Group Os04g0195000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:6504008..6511271

Sequence Coding Region

6504127..6504414,6504955..6505227,6505310..6505489,6505977..6506237,6506712..6506844
,6506945..6507035,6507462..6507564,6508098..6508201,6508350..6508443
,6508526..6508681,6508765..6508827,6508929..6508994,6509211..6509411
,6509540..6509617,6509706..6509825,6509923..6510003,6510089..6510174
,6510461..6510542,6510634..6511023

Expression

GEO Profiles:Os04g0195000

Genome Context

<gbrowseImage1> name=NC_008397:6504008..6511271 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:6504008..6511271 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccacggcggcgcggcgcggccacccgccgccgcacgagaacggcgtgggcgggcacgccgacgacgagccagacgaggacggcgaggaggaggaggaggagggggagggggaggtggaggatgatgaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtccccgcgatcgtctccaccgacgccgccgcggccatcgccgtcgccgaccgcatggtcgcgctcggcacgcacaacggcaccctccacatcctcgacttccagggtaatcaggtaaaggaaattgctgctcacacagcaactatcaacgacatcagttttgatgcagacggtgaatatataggaagctgctctgatgatgggactgtagtaataagcagcctcttcactgatgaaaaactgaagtttgagtaccatcgacccatgaaagcaattgccttagaccctaattattacaacaactatagaaggttcgctacagggggtttagcaggtcaagtacttgtgctgacaaaaaagtcgtggggaggtggctaccataaaaaggttctgcgtgatggcgaaggaccaatccattctatgaaatggaggacagacctccttgcctgggctaacgatgcaggggtaaaagtgcatgatatgaagacagacaaaggaatcgcgtttatagagaggccaaaaggaattcctcggccagagtttttacttcctcagttggtctggcaggatgataccatcttagttattggatggggaacaagtgtcaagattgcagcaattcgaacagattcatctcaaggactcaatggcatacagaggagtatcactgcaagtaatgagaagtacgtggatattgtgggttcgttccaaacaggctatcacatatccgggattgctccatttggtgatcttttagttgtgcttgcatatattccagaggaggaagacagagaaaacagttttagcaattctgttccttcacgtcagggaactgcccagcgtccagaaatacatcttgtatcatggaaaaatgatgaacttaccacagatgctcttcctattcatggttatgagcattataaggcaaaggattatgctcttgctcatgctcctttctcaggaagcagcaatgcaggtggacagtgggctgctggtgatgaacctttatattacattgtatctcctaaagatatagtggtcgcaaagccaagagatgctgaagaccatatttcttggcttcttcaacatggttggcatgaaaaggcattggctgcagttgaagcaggacaaggacgaaccgagcttcttgatgaggtgggttcgagataccttgatcatttgataattgaaagaaaatatgctgaagctgcacgcctctgtccaaaattgttgcgaggatctccttcagcatgggagaggtgggtctttcactttgcccatcttcgccaacttgctgtattagttccttacatacctacagagaatcctcagctgagtgatacagcttacgaggttgctcttgtagctttaactaccaatccttcttttcatgaacttctcttgacaactgtaaaaaaatggccacctacattatactccgcttcacctgtcatatctgcaattgagccacagctaaattcctcttcaatgactgattcattaaaagaggctttagctgaattgtatgtcatcaacagtcaatatgacaaggccctttctctgtatgctgaactcttgaagccagaagtattcgaatttattgagaagcacaacttgcatgatgccattcatgacaaggttgtcaatcttatgatattggatagtaaaagaactgtaaacctattgatccagcatcgtgatacgatccccccgaatgaagttgtaggacagttgttgcatgctagtaaaagttgtgacaaaagacatttgttgcatctgtatttacatgctctgtttgagacagacatgaatgctggaaaagactatcatgacatgcaggtggagctttatgcagagtatgagccaaggatgctaatacccttcctccgtaccagtcagcattacaggcttgacaaggcatatgaaatctttgcacaaaaagagcttgtacgggagcaagtttttgtgcttggtcgtatgggaaatgcaaaggaagctctctctacaattataaacaaattggaagatattcaggaggccgttgaatttgtgatggagcaacacgatgatgagttatgggaggaattgataagacagtgcctccaaaaacctgagatggttggaatgctgttggaacatactgttggcaatcttgatcctttgtacattgttagtttggttcctgatgggctagaaataccaaggttgcgggatcgccttgtgaaaattgtgacagactatcgaacagaaacttcattaagacatgggtgcaatgatatacttaaggctgattgcgtaaaccttttggtaaaatattatcacgaggctcggcgtggagtctacatggctagtatggacgaggaggtgacaggaactagggttgctgaaggatcttcacgagcaaacgagagatcatcaagtttacgagctttagagatcaaatccagaacaaggtgtggtgctcggtgttgcttgtgctttgatcctttgtcgattcaggacatctctgtcatcgtgttctactgctgccacgcatatcacacgtcttgcctcgaaggcgggttggacttgatgaaatcgaacagtagtactcaggacagcgacgaggatgatgaaggtaccccatcaggcgagtctcgaatgcgctgtgtattgtgtactacagctgctgcataa</cdnaseq>

Protein Sequence

<aaseq>MSTAARRGHPPPHENGVGGHADDEPDEDGEEEEEEGEGEVEDDE EEEPRLKYQRLGGSVPAIVSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAA HTATINDISFDADGEYIGSCSDDGTVVISSLFTDEKLKFEYHRPMKAIALDPNYYNNY RRFATGGLAGQVLVLTKKSWGGGYHKKVLRDGEGPIHSMKWRTDLLAWANDAGVKVHD MKTDKGIAFIERPKGIPRPEFLLPQLVWQDDTILVIGWGTSVKIAAIRTDSSQGLNGI QRSITASNEKYVDIVGSFQTGYHISGIAPFGDLLVVLAYIPEEEDRENSFSNSVPSRQ GTAQRPEIHLVSWKNDELTTDALPIHGYEHYKAKDYALAHAPFSGSSNAGGQWAAGDE PLYYIVSPKDIVVAKPRDAEDHISWLLQHGWHEKALAAVEAGQGRTELLDEVGSRYLD HLIIERKYAEAARLCPKLLRGSPSAWERWVFHFAHLRQLAVLVPYIPTENPQLSDTAY EVALVALTTNPSFHELLLTTVKKWPPTLYSASPVISAIEPQLNSSSMTDSLKEALAEL YVINSQYDKALSLYAELLKPEVFEFIEKHNLHDAIHDKVVNLMILDSKRTVNLLIQHR DTIPPNEVVGQLLHASKSCDKRHLLHLYLHALFETDMNAGKDYHDMQVELYAEYEPRM LIPFLRTSQHYRLDKAYEIFAQKELVREQVFVLGRMGNAKEALSTIINKLEDIQEAVE FVMEQHDDELWEELIRQCLQKPEMVGMLLEHTVGNLDPLYIVSLVPDGLEIPRLRDRL VKIVTDYRTETSLRHGCNDILKADCVNLLVKYYHEARRGVYMASMDEEVTGTRVAEGS SRANERSSSLRALEIKSRTRCGARCCLCFDPLSIQDISVIVFYCCHAYHTSCLEGGLD LMKSNSSTQDSDEDDEGTPSGESRMRCVLCTTAAA</aaseq>

Gene Sequence

<dnaseqindica>120..407#948..1220#1303..1482#1970..2230#2705..2837#2938..3028#3455..3557#4091..4194#4343..4436#4519..4674#4758..4820#4922..4987#5204..5404#5533..5610#5699..5818#5916..5996#6082..6167#6454..6535#6627..7016#aggcttcgcttccgtctcgcccaaatcggcgcaccaccaccgccccgccgtccacgaatcgaactgaccggagagatctcgcgatcccctccccaccccttcctgcgccggtggcgaccatgtccacggcggcgcggcgcggccacccgccgccgcacgagaacggcgtgggcgggcacgccgacgacgagccagacgaggacggcgaggaggaggaggaggagggggagggggaggtggaggatgatgaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtccccgcgatcgtctccaccgacgccgccgcggccatcgccgtcgccgaccgcatggtcgcgctcggcacgcacaacggcaccctccacatcctcgacttccagggtaatcaggtatcgtacccacctctttcccttcacgcatagctcgtagggcggtcgcttgctttgtgggattgggatttctggtaggataccgtggaattggatcgtctcgtctctgcgacctgtagcattggtctactgaattcgatttggttgtagaaaactgttaacctattgtttgtggaagagacgtcacaaaggtgaaattctgtttggggacacctgaaatatagattttgcagagaatatatattttaaggattgtgctagactgaggaatatggttcagtgtaaaatgttttcacgttgttggaggggattacctctggtgacctaaaaaatctaggaggactaggattgtctgctaaatatcggatataaccaagctgaggtggctgtgcatttaacaacattgacacagaaatttcaataaatggagattgcccatagcttccttcggcctgaaatcatgtgatggagcactatcagtaatgaccatggcctgcttagaaaataacattgtcatccattaattcaatacttttgcaggtaaaggaaattgctgctcacacagcaactatcaacgacatcagttttgatgcagacggtgaatatataggaagctgctctgatgatgggactgtagtaataagcagcctcttcactgatgaaaaactgaagtttgagtaccatcgacccatgaaagcaattgccttagaccctaattattacaacaactatagaaggttcgctacagggggtttagcaggtcaagtacttgtgctgacaaaaaagtcgtggggaggtggctaccataaaaaggtgcacttcttctcattgtcctacaagaaaatcaaattgatctggtgatttcaaatggttgtgtgagtctccttacatacaggttctgcgtgatggcgaaggaccaatccattctatgaaatggaggacagacctccttgcctgggctaacgatgcaggggtaaaagtgcatgatatgaagacagacaaaggaatcgcgtttatagagaggccaaaaggaattcctcggccagagtttttacttcctcagttggtctggcaggtaatacacatttatttatgcgaacactatacttttttataccaagtatggctcatttggaacatttcaatttggtcgacattaaaaatatgcacagttagggatcattttttttttcctttcagcaaatagttagtagaatacaaaggatattacagaaaagaaacatcatttcattctggcaaacatataccaaaagaatatatggtgcagcaggaaaaagtttcttgtacattgaaagctttaggattgattttttttcttccaatctagtttagtcagatataaggaactaatggttttaaacctaaaggaaaaggtatacgatagacatgttttcattgttagtcattcctgggagcattatatgtgttttatttgctgagaagtaagtttatagtcactttgctgttaatatatctgattcttttgggttctcattttcaatgaaattgtacatggcatactgactggtttgcatattcaggatgataccatcttagttattggatggggaacaagtgtcaagattgcagcaattcgaacagattcatctcaaggactcaatggcatacagaggagtatcactgcaagtaatgagaagtacgtggatattgtgggttcgttccaaacaggctatcacatatccgggattgctccatttggtgatcttttagttgtgcttgcatatattccagaggaggaagacagagaaaacagttttagcaattctgttccttcacgtcaggtaatcatgatggcttgtcctttgcactgcactctgtaaatctatttttctcctttattgtgtcatgacccgaggtcatgacaggataaacaccgccgggaagatagccgggcggcgtcatctcctggagaagggatgtagatttaggctagggagaagaacattattgggagagagagattagactaactgatattcattgcttaacttgagatgaatacaatccatcccttatatagagatgatatgacttgacccttaagaaactaactcaaactaactctatctaatcctatcctatctcctaaccaactgctacagtactcgtggtactgtttatccgctaggacttggcctcgtgggcctcggcctctctgcccaacgcctatgacatattgtgcaccagattccttttcttatgaagtgatgctgttcccacatttacctttttcgttatgtttaaacactttgtagggaactgcccagcgtccagaaatacatcttgtatcatggaaaaatgatgaacttaccacagatgctcttcctattcatggttatgagcattataaggcaaaggattatgctcttgctcatgctcctttctcaggtttaatgaaatgtgctttaacagtgaatgaacttctcttttcttcttcactgaaacttttctaatgaaggaattttattgttatatttttaccacccaggaagcagcaatgcaggtggacagtgggctgctggtgatgaacctttatattacattgtatctcctaaagatatagtggtcgcaaagccaaggtttgtaatgttgcaaaacaaaggattatattagcttctaagttctgcaattgcaaatgaaagaaggcaataattgattgagcaaaacttctctttttgaaaatgtgatcttccttcgtcatattttctctgattgtaatcttgaagaactccattagtccttcaattttctgcattatttaattgtgatacacatgtaagcttggctacttgcagtagatcacttcagttgcatatctgattctgtggcatttaattttcttctaactacaagtagcatacgtagaacaatactaagctagtttcttctgataatttccagcctatttgtgtttctgagctttctataaggacatggcaaaatttcatttcagaaaatgttgtatctttatatttctactgatataatatgtgctttcaaattagagatgctgaagaccatatttcttggcttcttcaacatggttggcatgaaaaggcattggctgcagttgaagcaggacaaggacgaaccgagcttcttgatgaggtaaagtagaaacagtttgagtttgaacagtaaatgaataatggtatgcattatctgcttgatgatgaggatgctacccttattgtttaggaaccttcaagtagacacctttaaggtccattatggcaactgaggtccccatccccttctatagttttgttggcgattatcacgttcacaatattgagcattttagctgaaaacaatgggacctgtatcatgtaccaataggtgtttatatttaagctggctcgtctttagactattgttgtcatgagttaaggtggtcctaacaatgtgaacaacaaatacattctgaaattctatgcatattttagaagtttgcttcctatcttatatatattatgctggtctgatgcatattttagaagttgacagcacttcaacaacataacccagtcagtatcttatgagcccatttttttaggaaggacgacctcagctattaagaaatctaaccacataatagctaggaacattattgaaattttgttcatgccatcttatgtcaggtgggttcgagataccttgatcatttgataattgaaagaaaatatgctgaagctgcacgcctctgtccaaaattgttgcgaggatctccttcagcatgggagaggtgagaaaaaaagaagtgttgatatacattgtatccttcatcatacgatctggaacaaacacaggagcattatgagattttgatgtgcattgtttgttttagttgatcactagtatatctactgaccataactttttttgtgccacaggtgggtctttcactttgcccatcttcgccaacttgctgtattagttccttacatacctacagagaatcctcagctgagtgatacagcttacgaggtgccattacttctttctattttgcttgcttgctctttacaacacctctgattctaatactaattctaattggtttatgtaggttgctcttgtagctttaactaccaatccttcttttcatgaacttctcttgacaactgtaaaaaaatggccacctacattatactccgcttcacctgtcatatctgcaattgagccacagctaaattcctcttcaatgactgattcattaaaagaggtatggaaacattttcttaatggatgtaagacttacacagtatttttgagctctttgacatcttggttctgtttgccatgtaggctttagctgaattgtatgtcatcaacagtcaatatgacaaggccctttctctgtatgctgaagtaagtattacctaacttgtagttaaaaggttcacattgcattaaattaatagaattttgttttattacctgtattgttgacccaacctcatttcattcagctcttgaagccagaagtattcgaatttattgagaagcacaacttgcatgatgccattcatgacaaggtatggttaaaattcccaaatgtaggataaaactgatctcacttgactttttttttcaagtttgcatttgtgaattgtcaagtgtcatggtagcaattgtctaataatggtacttacatatggttacaatgtagttgaacatgataatatattttagacagagacaggcttcaataacctccatatattcacttatgggccttgcgtatttcgcaggttgtcaatcttatgatattggatagtaaaagaactgtaaacctattgatccagcatcgtgatacgatccccccgaatgaagttgtaggacagttgttgcatgctagtaaaagttgtgacaaaagacatttgttgcatctgtatttacatgctctgtttgagacagacatgaatgctggaaaagactatcatgacatgcaggtatgctgattcttctgtgaacaagcagtctttatcatactgttcacctcctgcccatttgccctatttctgtagctctagtttttgtattagtataacagctaaccacattacactttgtgttgtaggtggagctttatgcagagtatgagccaaggatgctaatacccttcctccgtaccagtcagcattacaggcttgacaaggtcataaactcataattctcaaaagagaaaaaaaaagcattcattatcttgagaaggatgagtaatgaatgacatgtggttatttcaggcatatgaaatctttgcacaaaaagagcttgtacgggagcaagtttttgtgcttggtcgtatgggaaatgcaaaggaagctctctctacaattataaacaaattggaagatattcaggaggtcctaatgtggttatgatcattttgttaaaaatttggggctagactagcaattctagactgtggttggattgcaataacagtaaccttggatgcaggccgttgaatttgtgatggagcaacacgatgatgagttatgggaggaattgataagacagtgcctccaaaaacctgagatggtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcaggttggaatgctgttggaacatactgttggcaatcttgatcctttgtacattgttagtttggttcctgatgggctagaaataccaaggtaaatgtgccaaaatttgtttcgttcaaagataatgagaacctacccccaaaaaaaaaaacatcacatatacaccttacgaaacgaatttctatcatcagatgatcagaaattcagaatccaccaattacttatatacaaattattagctatgaccatcactcagtttattataataattatagggctatattgacactgtagaatagagatgctacaactttatttaatccaatccttctcttccctggttcaagtgttcattgaaatattacgcttttgataggttgcgggatcgccttgtgaaaattgtgacagactatcgaacagaaacttcattaagacatgggtgcaatgatatacttaaggttaatattcaagaaaaagatatacttaaggttagttgtctatttattaccccacatctatcttgacgtttgatgaccctgccatgtacaggctgattgcgtaaaccttttggtaaaatattatcacgaggctcggcgtggagtctacatggctagtatggacgaggaggtgacaggaactagggttgctgaaggatcttcacgagcaaacgagagatcatcaagtttacgagctttagagatcaaatccagaacaaggtgtggtgctcggtgttgcttgtgctttgatcctttgtcgattcaggacatctctgtcatcgtgttctactgctgccacgcatatcacacgtcttgcctcgaaggcgggttggacttgatgaaatcgaacagtagtactcaggacagcgacgaggatgatgaaggtaccccatcaggcgagtctcgaatgcgctgtgtattgtgtactacagctgctgcataataacttatttcgtaacgagtagtccatatccatgtgttgtgttgtaagtttgagccttgtaattagcgtgttattctggcgtgataaatatgtacaataggttaattctttggggggaagccatatcctcagcaagaggagttttgtgtagatttgacagatatgttgattacttgagcaaagttgtacggcatttttcttaatgccacgagtgccagaccatcggaagttcattccgattcttatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0195000, RefSeq:Os04g0195000