Os04g0217900

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Revision as of 11:00, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0217900| Description = Zinc finger, TRAF-type domain containing protein| Version = NM_001186868.1 GI:297722866 GeneID:9267213| Length = 340...")
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Gene Name

Os04g0217900

Description

Zinc finger, TRAF-type domain containing protein

Version

NM_001186868.1 GI:297722866 GeneID:9267213

Length

3407 bp

Definition

Oryza sativa Japonica Group Os04g0217900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:7874366..7877772

Sequence Coding Region

7874366..7874869,7875042..7875272,7875443..7875478,7877743..7877772

Expression

GEO Profiles:Os04g0217900

Genome Context

<gbrowseImage1> name=NC_008397:7874366..7877772 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:7874366..7877772 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagctcccagttgctgatcctgggccggtgagggctgaaggattgcttctgcagtgtccctattgtgattcagaggcaatgcacaaactcgcgcagttcttgctccccggcttggctgcggtatgcattgactgcacgacaggcgatctcttcaggaagccgtcggttgtcgccgttgacatgaggaaggaaatggtggactatgtcacgcagagaagcgagacattcatatccgattcgcttatcgaatcagaagcaagtcaggatcaagagaacgagatgccggtggacccttttgagatcgtgtccatcttcatggatgattttagtagcacgaagaggaacattatcggccatgtctctgggtggttgatgagcgacagccgcgaagataagattgatgactttgtccaagaaatggagatgacccgcttctggccgctggaaaggagagaagttattgctgaggtcctcctcaagaatgtagaacctgaaaaccaaaactgtgagaagcggcttctgaggcgtgatatggataggcactgcgtgactgtgtgccccatgaggcccatgaaatgcccttttggctgtgattcctcctttcctgagcgtaatcttgagcagcactgttctgagtttcttcaggcacacctccataaactcctcaaggttattcataagaaaggttttacagatgaggggctcaaggaccatgctctactgctggaaaagcatgacaatgatggtaaactggctaaatctcgggatcatgtattgttcggaagtgctaatgggtga</cdnaseq>

Protein Sequence

<aaseq>MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCI DCTTGDLFRKPSVVAVDMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPVDPFEI VSIFMDDFSSTKRNIIGHVSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLL KNVEPENQNCEKRLLRRDMDRHCVTVCPMRPMKCPFGCDSSFPERNLEQHCSEFLQAH LHKLLKVIHKKGFTDEGLKDHALLLEKHDNDGKLAKSRDHVLFGSANG</aaseq>

Gene Sequence

<dnaseqindica>1..504#677..907#1078..1113#3378..3407#atggagctcccagttgctgatcctgggccggtgagggctgaaggattgcttctgcagtgtccctattgtgattcagaggcaatgcacaaactcgcgcagttcttgctccccggcttggctgcggtatgcattgactgcacgacaggcgatctcttcaggaagccgtcggttgtcgccgttgacatgaggaaggaaatggtggactatgtcacgcagagaagcgagacattcatatccgattcgcttatcgaatcagaagcaagtcaggatcaagagaacgagatgccggtggacccttttgagatcgtgtccatcttcatggatgattttagtagcacgaagaggaacattatcggccatgtctctgggtggttgatgagcgacagccgcgaagataagattgatgactttgtccaagaaatggagatgacccgcttctggccgctggaaaggagagaagttattgctgaggtcctcctcaagaatgtagaacctgaaaaccaagtaccactgccctgagaaatatgaaaatgaagaacgtctcgctgatcataaggcccagtgtagcttcagacctgttacctgccccaatgatggatgccgagcgaaagtttctgttcgctgcatgcaagaccatgattcagcttgcctgtttaaaatccttacatgtgagcagaactgtgagaagcggcttctgaggcgtgatatggataggcactgcgtgactgtgtgccccatgaggcccatgaaatgcccttttggctgtgattcctcctttcctgagcgtaatcttgagcagcactgttctgagtttcttcaggcacacctccataaactcctcaaggttattcataagaaaggttttacagatgaggggctcaaggaccatgctctactgctggaaaaggttaggctcctgatcttgttaatttacaatgtgtaacatatgtttttcaattaaaatggctgccttattttcttgatttggaaacattgctgtcaaactattgtgaaaaagaagacatacatggactgcaacaatatgatttactgaaataatctggttttgttctgcagcatgacaatgatggtaaactggctaaatctcgggatgtaagatctcttactaatgttgtaaagaatcttgaagccaaaataaaagatgattcgagttagagtggatggcgtctccagagcaaaatgcaagttttttttttttgaggcagcaaaatgcagcatggatattgaatggtatagttgaagagttgtttccactcacagtatacaccgaagagtacaagattctgcacgtttttcctttacaactataattttcccctcatgatttttcttttctcaaaatcggttagttttttatggtgtaaaagtataacattattttatccttgctattttgtccaaggaactctttttttttcatataaattgagaataatttatcaggaatgctaatttttgtttaatttatggaagggcgatgctcgaagtaagggatgtttttcccagtctgattccgttccctgtaccagctaaatacccactagctgaagttaaatgctattcctcacaatgttattatttgttttttggaaactttttttttcaatgatccagatcaaggttaggaacactagcatttatcggtaaactgttggaatggtttaaattcaaattttattttttgatttacacttagtaccgtttacatgccctcacatgtataatgcccattgataggatatctccacctcctacaagttgtgtcgttttcatttatcatggattcgtgtatgatgtttatttcaatgtataaattattacaagaatgtcaaacatttttttttcaactagtccctgatccgtaaccattattcaaattctttttttttctgggaaaacagttattcaaattctaatattcgatttggatttatgtccagtaaattctactccctctgtttcatattataagttattttgaatcttttctagccaaatttatttaggtttgacagtttattaaaaaaaatagttcggttaaatgtaacattgaatatgtttttttaaatgttgctatattcttttattatttgatcaaacttaaaaaagtttgactaggaaaaaaaatcaagcaacttaaagtctttttatacgaggggaaaagagagaattgagaagatacgcaaaacaaggtgagcattagcgaataattaattgagtattaattattttaaattttaaaaaatagattaatatgatattttaaagcaatttttctatagattttttttataaaataaacatcgaaaatatgcgcgtaaaatacgagggagtttttctgtttctacctaatcaatttctcacaatcagttttatgatatgaaacggagggagtagatcgctaattactggtcaggcttgggtgactggtactttttgcaaatactggtttcctaggttttatcctaacaaataatctggagatcttttacggtgtttgcattttaaaaagggtaaaagtctatcgctgcacaatgaaaggtaccacttaaaaggttgatatagttacttactacctccgtcccacgaaaaatccaatcctagcatcccaagatagaattagtggaggatagaaatgactaaaatgcccttaatcattgaaaaaagtagtaagagtaataataggtaggtaaagggtattaaagggagttttatctataaagagtaggtaggatggtaggatggtataggatggtagaagttggtttttttatgggacaaagttcaaactctagaagttgagttttttttttttgacggagggagtaggtggtaaaagtaaaatgataattttcgtaggagatagagaatggcataattgttttcgatattagttctaggtacataggtgcatacaatacctcaataactgtgtgcccggtaatttacatgacatgttttttagatttacattttttcctacgaatatggtcatgcagtaatcctctgttacattatttacgtgtttgttttagatttatatttacgtgatattttctagattttcattttgttctaggagcacgattggttaaaatatgaccgaatgtttgccaggttattttgatatttacattttatcacaaagaacatctaaccttggtaaaaagatcagtggttagtaggttcatgtgtaattcatcctcaatacgatatatttatattgtttccacgtgtttgcgtcatctccccgatgaaatttaactaaaatgtcttaagcaattaaatagcttatttccttacagttattttgtaatgtatcgggtaaaatggaaatcacatgcatgcttggatagcatgtattgttcggaagtgctaatgggtga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0217900, RefSeq:Os04g0217900