Os04g0228400

From RiceWiki
Revision as of 11:01, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0228400| Description = Expansin precursor (Alpha-expansin OsEXPA1)| Version = NM_001058824.1 GI:115457377 GeneID:4335222| Length = 1235 bp|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0228400

Description

Expansin precursor (Alpha-expansin OsEXPA1)

Version

NM_001058824.1 GI:115457377 GeneID:4335222

Length

1235 bp

Definition

Oryza sativa Japonica Group Os04g0228400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:8650406..8651640

Sequence Coding Region

8650447..8650600,8650701..8651332

Expression

GEO Profiles:Os04g0228400

Genome Context

<gbrowseImage1> name=NC_008397:8650406..8651640 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:8650406..8651640 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccggctcgtcagccgcaacgtcgtgtgctcggttcctggcattgctggcgacatgcctcctctggaacgaggccgcatcgttcacggcgtccggctggaacaaggcgttcgccaccttctacggcggcagtgacgcttcaggaacgatgggtggggcgtgtgggtacggggacctgtactcgacggggtacgggacgaacacggcggcgctgagcacggtgctgttcaacgacggggcgtcgtgcgggcagtgctaccggatcatgtgcgactaccaggcggacaggcggttctgcatctccggcacgtcggtgaccatcacggcgaccaacctctgcccgccgaactacgcgctccccaacgacgccggcgggtggtgcaacccgccgcggcagcacttcgacatggccgaaccggcgtggctcaagatcggcgtctacgtcggcggcatcgtgccggtgatgtaccagcgggtgccgtgcgccaagcagggcggggtgaggttcaccatcaacggcagggactacttcgagctggtgctcgtctccaacgtcggcggcgtcggctccatccagtcggtgtcgatcaaggggtcgaggaccgggtggatggccatgtccaggaattggggcgtcaactggcagtccaacgcctacctcgacggccagagcctgtcgttcaaggtcaccagcagcgacggccagacgctcaccttcctcgacgtcgccccggcgggctggacgttcggccagaccttctcgacctcacagcagttctcttaa</cdnaseq>

Protein Sequence

<aaseq>MAGSSAATSCARFLALLATCLLWNEAASFTASGWNKAFATFYGG SDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCIS GTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRV PCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSN AYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQQFS</aaseq>

Gene Sequence

<dnaseqindica>42..195#296..927#gccattagcagcacattcaccggcagcacacgcgcgcacacatggccggctcgtcagccgcaacgtcgtgtgctcggttcctggcattgctggcgacatgcctcctctggaacgaggccgcatcgttcacggcgtccggctggaacaaggcgttcgccaccttctacggcggcagtgacgcttcaggaacgatgggtaagttcgtagctagctagctactgtagctaggaatggatccatcgtgcaatcggtgacgttggttcatgtgcatgcgtgtcgtcgtgtgtgtgtgcaggtggggcgtgtgggtacggggacctgtactcgacggggtacgggacgaacacggcggcgctgagcacggtgctgttcaacgacggggcgtcgtgcgggcagtgctaccggatcatgtgcgactaccaggcggacaggcggttctgcatctccggcacgtcggtgaccatcacggcgaccaacctctgcccgccgaactacgcgctccccaacgacgccggcgggtggtgcaacccgccgcggcagcacttcgacatggccgaaccggcgtggctcaagatcggcgtctacgtcggcggcatcgtgccggtgatgtaccagcgggtgccgtgcgccaagcagggcggggtgaggttcaccatcaacggcagggactacttcgagctggtgctcgtctccaacgtcggcggcgtcggctccatccagtcggtgtcgatcaaggggtcgaggaccgggtggatggccatgtccaggaattggggcgtcaactggcagtccaacgcctacctcgacggccagagcctgtcgttcaaggtcaccagcagcgacggccagacgctcaccttcctcgacgtcgccccggcgggctggacgttcggccagaccttctcgacctcacagcagttctcttaagtaattaaatattaatgagttattactggtccattcatatatgtgtttaattccgagcgtatattatcatcggcgtcggcgtgtaaagactaaagatatattactagtagctgtttgggttgcccacaagtttggagcatgcgcgcacaagtgtttggtgtggcgagctatatatatgatttgcaagctaaggacacctgcttttttcaatgcgaattaaaacggtatatatatgtacagtttgcgaggtgcttgccaatcgatgatcggcatgctttactgtaacgaccacacaaggagttttcact</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0228400, RefSeq:Os04g0228400