Os04g0266900

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Revision as of 11:01, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0266900| Description = Bacterial transketolase family protein| Version = NM_001058870.1 GI:115457469 GeneID:4335330| Length = 6021 bp| Def...")
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Gene Name

Os04g0266900

Description

Bacterial transketolase family protein

Version

NM_001058870.1 GI:115457469 GeneID:4335330

Length

6021 bp

Definition

Oryza sativa Japonica Group Os04g0266900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:11073472..11079492

Sequence Coding Region

11073532..11073936,11075666..11075756,11075854..11075959,11076041..11076323,11076409..11076557
,11077929..11078082,11078184..11079140

Expression

GEO Profiles:Os04g0266900

Genome Context

<gbrowseImage1> name=NC_008397:11073472..11079492 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:11073472..11079492 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacggcgacgcaagctcccacctcgcccgccgccgcgtccgggcgtggctccgttctccccctcctccgtggccgcccctccacccgcgtccgcctcgccgttggccggcgaccgcagaccgccctccgcgcgcagccgccgggggcggcggaggtggtggagcagtcggtgaacaccatccggttcctcgccgtggactccgtggagaaggccaagtccggccacccgggactccccatggggtgcgcgccgctgggccacgtcctattcgacgagttcctccggttcaaccccaagaacccctactggttcgaccgcgaccgcttcatcctctccgccggccatggatgcatgctccagtacgcactgcttcacctcgccggatacgacagcgtcacgatggatgatctgaaagctttccggcagtggggaagcagaactcctggtcacccagaaaacttcgaaacacctggtgttgaagtcactactggtcctctggggcagggttttgcaaatgctgttggcctagcgcttgctgagaaacatctagctgcccgtttcaataagcctgatttgaaaatcgtggatcatcacacgtatgttatacttggggatggctgccaaatggaaggtgtgtcaaatgaggcatcctcccttgctggtcactggggtctcgggaaactaattgccttctacgatgacaatcatatatcaattgatggtagcacaggcattgctttcactgaagatgcacttgcccgatatgaggcactaggttggcatactatctgggtgaaaaatggtaacacagggtatgatgacatccgtgctgcaattaaggaagcaaaggcagtcaaagacaagccaactcttatcaaggtgactactactattggttatggatccccaaacaaagcaaacacttatagtgttcatggtagcgctctaggtaccaaagaagtagaggcaaccaaaaacaatctttcttggcatcatgaacctttccatgttcctgatgaggtgaaaaggcactggagtcaccatattgatgagggtgcttctctggaagctgaatggaataaaaaaattgttgaatatgaaaagaaatatcgccaggaggctgctgagttaaagagcataatttcaggagaactgccttccgggtgggacaattctcttccaaaatatactcctgaaaatcctgctgatgctacaaggaacttatctcaacaatgcttgaatgctcttgctaaagcaatacctggatttcttggaggtagtgccgatctcgcaacatcaaatatgacattactaaaaatgtttggtgattttcaaaaagacacacctgaagaaagaaacatccgttttggtgtgagagagcatgcaatgggtgccatttccaacggcattgcattgcacagtcctggactaataccttactgtgcaacattctttgtgtttactgactatatgagagctgccattcgtctttcggccttatgtggatcaagggtgatctttgtaatgactcatgattcaattggccttggagaagatgggccaacacatcagcctgttgaacagttattcagcctccgcgccatgccaaacatactaatgcttcgacctgcagatggaaacgagacttctggagcttacaagattgcagttcttaataggcaaaggccctctgtccttgccctttctaggcagaagcttcaacagctgaaaggaacatcagcggaaggcgttgccaagggaggatacattatttctgataattcatcaggaaacaaaccagatatcattctcatcggcactggttctgaacttgagattgtagaaaaagccgcagatgagctgaggaaagatgggaagactgtacgagtagtttcactggtttgctgggaattgtttgaggagcagtcggagaaatacaaggagagtgtttttccaagtgaagtaacttctaggatcagcgtcgaggctggggtcacatttggatgggagaaatatatcggagaaaaaggtaaagctattggtgttgaccgttttggttctagtgcgcctgctgggaaaatatacaaggagcttggtttgacagtggaaaatgtcattgcaacggccaagtcactgtga</cdnaseq>

Protein Sequence

<aaseq>MATATQAPTSPAAASGRGSVLPLLRGRPSTRVRLAVGRRPQTAL RAQPPGAAEVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKN PYWFDRDRFILSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPG VEVTTGPLGQGFANAVGLALAEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEA SSLAGHWGLGKLIAFYDDNHISIDGSTGIAFTEDALARYEALGWHTIWVKNGNTGYDD IRAAIKEAKAVKDKPTLIKVTTTIGYGSPNKANTYSVHGSALGTKEVEATKNNLSWHH EPFHVPDEVKRHWSHHIDEGASLEAEWNKKIVEYEKKYRQEAAELKSIISGELPSGWD NSLPKYTPENPADATRNLSQQCLNALAKAIPGFLGGSADLATSNMTLLKMFGDFQKDT PEERNIRFGVREHAMGAISNGIALHSPGLIPYCATFFVFTDYMRAAIRLSALCGSRVI FVMTHDSIGLGEDGPTHQPVEQLFSLRAMPNILMLRPADGNETSGAYKIAVLNRQRPS VLALSRQKLQQLKGTSAEGVAKGGYIISDNSSGNKPDIILIGTGSELEIVEKAADELR KDGKTVRVVSLVCWELFEEQSEKYKESVFPSEVTSRISVEAGVTFGWEKYIGEKGKAI GVDRFGSSAPAGKIYKELGLTVENVIATAKSL</aaseq>

Gene Sequence

<dnaseqindica>61..465#2195..2285#2383..2488#2570..2852#2938..3086#4458..4611#4713..5669#actccacactcctcgactttcgtagcagcaagccacgcgtgaccgagaagcctcgcggccatggcgacggcgacgcaagctcccacctcgcccgccgccgcgtccgggcgtggctccgttctccccctcctccgtggccgcccctccacccgcgtccgcctcgccgttggccggcgaccgcagaccgccctccgcgcgcagccgccgggggcggcggaggtggtggagcagtcggtgaacaccatccggttcctcgccgtggactccgtggagaaggccaagtccggccacccgggactccccatggggtgcgcgccgctgggccacgtcctattcgacgagttcctccggttcaaccccaagaacccctactggttcgaccgcgaccgcttcatcctctccgccggccatggatgcatgctccagtacgcactgcttcacctcgccggatacgacagcgtcacggtgagctcctcttttcttgaattttttgtggggctttaggagggttttttggtcgaattttaggagcagtttgtaaatggaaatcgattgccctggaaatatgaaactaatgttggttgttttgggatttaaattgaaataagttgaaccaaatgcgaaaggcatcaaaggttgcagagagatctttgatcctatcggcaatctgtttcaattcttgtactgcttcttagaagatgggtatgcttatcccagtcccctctctgctttcatggtccggttttctaccggtagttgtggtgctatttcggcttctcaattccggcatgaaagctttcttgggatgatctgaggaatcatgtaattttctgcgcacagtaattttgacaattggtaagcaggcagggcaaacttatatcagcatgattgtttgttcatttctaaattaagtttcagaggtaaatggataacatatcttagctgtgtgtcttatgacaaagccggagatgtaatccatttccattatctaaaaaaatggataacatatatccagatgagaattgtcataatctgtaataagaatatattccaattgtatatactcccttcggatgaaattactggacggtttggactgtgcaaatgcttgcacctagttgtatttagctgtcggaaatgtcagataaacctgaccagagggagtgcatgttgatcttgtgcactaaatgtaatattgataaatttgtagtcttatatttcgtttggttctctatttctcctttgtacacgtatcatgattgcaccaaagcagcagtgccatcacaagttggacaagaaacaagttccagacatgtatatctagagagttagactatctctaatgttgaggtgtccaacagtgataagtcattttaacatgttctctagcaactgactcactaagcataacaaatgaaataaatcttctctgcattatgcggttttggctgtcttcacctgtttttgttctgttgctttgtttactttcttattggatgtgcgatggctagcagattaaacatccacatcattcatcacagtatatttctggccttccactcttttatgttctgctgagcattttcaatccttattctctagactgctggtaagttggagcagttgttatcccatcagctgatgacaccaagctccatacatgccatggcagcaacattatttgttttgatgcaaacgaatataaaagaaagcagtacattataggtcatactttcatattttagttgttgtagcttagcacacataaaacaaggttgtagttaactctaggttttgtgacatttttaccccctattgattacctttacttgtaattaatagcatccaaattaccttgccatttcacctagctcgttcaatcccatgcctctacaccttaacatcagcccataaatggtcttgcaaacagttcattgacaagagatatgaacttgagttaggatatattggggaaattatctcaaagagatgaaacattatttctttaagaacaaaaccaacaccctaaaacagtatcttaaaaaaaattgagattttatatggttttcaaattagatgttatatttttggtgatgaattatcatctttatttgtttagtcagtaagatattaatattgttccgttaattccttcttaattttttttattagaggatcatatttgtttgtgcagatggatgatctgaaagctttccggcagtggggaagcagaactcctggtcacccagaaaacttcgaaacacctggtgttgaagtcactactggtttgcctcttgtactaatttttaaagtttgctttatccccttctggtgttcttccggaaaaattacctatctctaaaaccttctgatgttatgcaggtcctctggggcagggttttgcaaatgctgttggcctagcgcttgctgagaaacatctagctgcccgtttcaataagcctgatttgaaaatcgtggatcatcacacgtaagttattcctttcttgacctaatgcacaatagggacagtggtaagttctaatacaatattggtacttgatggtcttaggtatgttatacttggggatggctgccaaatggaaggtgtgtcaaatgaggcatcctcccttgctggtcactggggtctcgggaaactaattgccttctacgatgacaatcatatatcaattgatggtagcacaggcattgctttcactgaagatgcacttgcccgatatgaggcactaggttggcatactatctgggtgaaaaatggtaacacagggtatgatgacatccgtgctgcaattaaggaagcaaaggcagtcaaagacaagccaactcttatcaaggtgacagctagtttgccactttaatttctttgcttatcatctcgattcagttttaccagacagaaggtgttgatcttccatataggtgactactactattggttatggatccccaaacaaagcaaacacttatagtgttcatggtagcgctctaggtaccaaagaagtagaggcaaccaaaaacaatctttcttggcatcatgaacctttccatgttcctgatgaggtgaaaaggtacatattattcactactctacgcttaagccactgttggatttaggctgcagtgctgcacattttcgaaggaaaagtaatcataattcataatttaatatctttttagcaatcttttatttttgagcaaccatcgtagtttaacaatgtagccagtcttcaggcaattcaaataagatggtttaataagaaagtagtggtttaactgatcaattgcaaggtcaagatgaattcaaatttatcttcctcaacatttggtggtacactgtaagcattgccatgggatcaatgccctatttctactagaatacattaataccacagaacaagagtagtaaaaaaataaaatcaacagcaatgcttcccatccatgatttctttggtgtgttgcaaacttcctatatgtaatagttaaaatcgagaattatttttcagatgtataaatcgggagcatcatatgtgtggtcaatcttgaactgctctttatcagtaaatttcagaccctttgttttgtggcattaataaaacaaaacgacatattttattttttttccatcacaaaaccacttgttctcagtaaactgtcaggggtgcacaagcaggctgatacgtaaagcatgccacatcagttcattgcgagctccagggtgtgtgcaggcttactgcattcctcagtgtcatagttgccctgcactgcctctttcctgcttcagtattgcctacttgctgcagcactagacttgccatgcaccaccatctggagaggctgcttcagttgagctataaaaaaaggtttcttcttgctaactagaactctagaagcaatatttcaagagaaggcttcaatgatgattttttgtgttcctgaaattaactgagaaagtaacccctaaaaagacaatgagagcaatcctagcaaaaatgcttcagccttatacaatttctccaatatgtgagaagaaaatatcaacaaataaatccaaaaattttgaagataataattcggtacaaaactaatgcacagctgcacaaaagtaatctatatcacatatcttacaaataccctaatctagggtttatgctttaagcagcaaatatgggccaacgccaacaggcggagaaggcaagaacgttcctgcttgtaatgcaactaccccctatagcaatcaccacccagacattcagacttattccgtgtggggaagaccacaacaacctgtgctgctaaagttcaaggagattgataatgtttttgaggaaaaaggagactgataatgcagttttgtgaaatttatgtttcaatttccatttttttgttcaaacaaactttgttctgcacgatagtttggttaataaaattattcctcacaggcactggagtcaccatattgatgagggtgcttctctggaagctgaatggaataaaaaaattgttgaatatgaaaagaaatatcgccaggaggctgctgagttaaagagcataatttcaggagaactgccttccgggtgggacaattctcttccagtaagtgcttccctgaattcaaatgccatgtctgttcaaatagcaggtgtaaaaatgatgcatatgtttttcttttcactgttcttttatctgttttgcagaaatatactcctgaaaatcctgctgatgctacaaggaacttatctcaacaatgcttgaatgctcttgctaaagcaatacctggatttcttggaggtagtgccgatctcgcaacatcaaatatgacattactaaaaatgtttggtgattttcaaaaagacacacctgaagaaagaaacatccgttttggtgtgagagagcatgcaatgggtgccatttccaacggcattgcattgcacagtcctggactaataccttactgtgcaacattctttgtgtttactgactatatgagagctgccattcgtctttcggccttatgtggatcaagggtgatctttgtaatgactcatgattcaattggccttggagaagatgggccaacacatcagcctgttgaacagttattcagcctccgcgccatgccaaacatactaatgcttcgacctgcagatggaaacgagacttctggagcttacaagattgcagttcttaataggcaaaggccctctgtccttgccctttctaggcagaagcttcaacagctgaaaggaacatcagcggaaggcgttgccaagggaggatacattatttctgataattcatcaggaaacaaaccagatatcattctcatcggcactggttctgaacttgagattgtagaaaaagccgcagatgagctgaggaaagatgggaagactgtacgagtagtttcactggtttgctgggaattgtttgaggagcagtcggagaaatacaaggagagtgtttttccaagtgaagtaacttctaggatcagcgtcgaggctggggtcacatttggatgggagaaatatatcggagaaaaaggtaaagctattggtgttgaccgttttggttctagtgcgcctgctgggaaaatatacaaggagcttggtttgacagtggaaaatgtcattgcaacggccaagtcactgtgaagtatcgtttgctttaatgagcatatatataggaatgccagtttcaataatatattggatttgaataaagcggcaggctttcaagtagtttgtgcttgaggagtccgtgtttaggctttctgagtgtaaggcactttttttttgaacgaaccagtcagtgtaaggcactttacatgctgtttcaattcactcttgaattttgccgtcgcacttgggagcattgagagtttattagtcggggccggcccatgaactgccattactatgttgttgcagaataaaatgttgatggcattatcagattcattatcggctttttatcaagttataatggtatggttctgatttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0266900, RefSeq:Os04g0266900